mRNA_F-distichus_contig107777.660.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107777.660.1
Unique NamemRNA_F-distichus_contig107777.660.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig107777.660.1 vs. uniprot
Match: D8LFH4_ECTSI (Short-chain dehydrogenase/reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFH4_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 2.810e-35
Identity = 64/86 (74.42%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    1 RAGAALAAAPSIMVKTGKVQVVAELAKEYGFDDLGGNRPPSIRSLRFLLPTYLFPKVLPEGVEVAASFVPDWLLPMDVMRNGRPPS 258
            RA AALAA P I+ KTGKVQ+VAELAK+YGF D+GG+ PPSIRSLRFLLPTYLFPK+LPEG ++  S VPDWLLPM +M NG+PPS
Sbjct:  327 RAVAALAADPEILKKTGKVQIVAELAKQYGFTDVGGDTPPSIRSLRFLLPTYLFPKILPEGTKIDTSSVPDWLLPMFIMANGKPPS 412          
BLAST of mRNA_F-distichus_contig107777.660.1 vs. uniprot
Match: A0A7S2GC83_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GC83_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 8.290e-20
Identity = 49/85 (57.65%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   16 LAAAPSIMV-KTGKVQVVAELAKEYGFDDLGGNRPPSIRSLRFLLPTYLFPKVLPEGVEVAASF---VPDWLLPMDVMRNGRPPS 258
            LA +P+IM  ++G VQVVAELAKE GF D  GN PPSIRSLRFLLP Y+FP +  E   V +     VPD+LLP  V   G PPS
Sbjct:   31 LATSPTIMEPRSGSVQVVAELAKELGFTDENGNSPPSIRSLRFLLPNYVFPSIEKESGPVPSWIKDNVPDYLLPWSVFSGGPPPS 115          
BLAST of mRNA_F-distichus_contig107777.660.1 vs. uniprot
Match: A0A6U5IRZ3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5IRZ3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 9.310e-18
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 RAGAALAAAPSIMVKTGKVQVVAELAKEYGFDDLGGNRPPSIRSLRFLLPTYLFPKVLPEGVEVAASFVPDWLLPMDVMRNGRPP 255
            RA  A+A  P+ M K+G  QVVAELA EYGF D+ G +PPSIRSL+FLLP+Y F +   +  ++    +PDW LP  VM  GRPP
Sbjct:  244 RAVVAVATDPNNMEKSGTFQVVAELADEYGFTDVDGKKPPSIRSLKFLLPSYAFDEETRK--KIPDWMIPDWKLPFSVMAQGRPP 326          
BLAST of mRNA_F-distichus_contig107777.660.1 vs. uniprot
Match: A0A7S4EH97_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EH97_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.370e-15
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   16 LAAAP--SIMVKTGKVQVVAELAKEYGFDDLGGNRPPSIRSLRFLLPTYLFPKV---LPEGVEVA---ASFVPDWLLPMDVMRNGRPP 255
            LAA P  ++M ++G V+VVAELAKE+ F+DL GNRPPSIRSL++LLP ++FP +   L +G E+     + +PD LLP     +G PP
Sbjct:  315 LAALPKTTMMERSGNVEVVAELAKEFDFNDLDGNRPPSIRSLKYLLPNFVFPSIEKELEDGKEIPDWIKNNIPDILLPWSTFSSGPPP 402          
BLAST of mRNA_F-distichus_contig107777.660.1 vs. uniprot
Match: A0A8J5XNA8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XNA8_DIALT)

HSP 1 Score: 79.3 bits (194), Expect = 1.470e-15
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 RAGAALAAAPSIMVK--TGKVQVVAELAKEYGFDDLGGNRPPSIRSLRFLLPTYLFPKVLPEGVEVAASF---VPDWLLPMDVMRNGRP 252
            RA  ALA AP  M++  +G VQVVAELA+++GFDD G  RP SIRSLRFLLP Y+FP +  +G+ V       VPD  LP  V + G P
Sbjct:  264 RATVALACAPPDMLRALSGSVQVVAELAEQFGFDDEGATRPASIRSLRFLLPQYVFPDMRKQGLPVPGWLDERVPDVKLPWAVFKGGPP 352          
BLAST of mRNA_F-distichus_contig107777.660.1 vs. uniprot
Match: A0A7S0LBI5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LBI5_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 2.280e-15
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   34 IMVKTGKVQVVAELAKEYGFDDLGGNRPPSIRSLRFLLPTYLFPKVLPEGVEVAA---SFVPDWLLPMDVMRNGRPPS 258
            ++ ++G+VQVVAELAKE+ F +  G+RPPSIRSL FLLP Y FP++   G+ + A   S VPD LLP  +  +G PP+
Sbjct:  291 LLERSGRVQVVAELAKEFDFLEADGSRPPSIRSLAFLLPNYAFPQMEAGGLRIPAWVRSSVPDVLLPWSIFSSGSPPA 368          
BLAST of mRNA_F-distichus_contig107777.660.1 vs. uniprot
Match: A0A1Z5JS15_FISSO (Dehydrogenase/reductase SDR family member 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS15_FISSO)

HSP 1 Score: 76.3 bits (186), Expect = 2.390e-14
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1
Query:   13 ALAAAPSIMVKTGKVQVVAELAKEYGFDDLGGNRPPSIRSLRFLLPTYLFPKVLPEGVEVAASFVPDWLLPMDVMRNGRPP 255
            A+AA P+ M K+G  QVVAELA+EYGF +  G  PPSIRSLRFLLP+Y   + + +  ++ +  +PD+ LP  +M  G+PP
Sbjct:  325 AVAADPNNMKKSGSYQVVAELAQEYGFTEDDGRTPPSIRSLRFLLPSYAMDETIRK--KIPSWLIPDFKLPFWIMSQGQPP 403          
BLAST of mRNA_F-distichus_contig107777.660.1 vs. uniprot
Match: A0A7S2Q2P0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q2P0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.260e-14
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   13 ALAAAPSIMVK--TGKVQVVAELAKEYGFDDLGGNRPPSIRSLRFLLPTYLFPKVLPEGVEVAASFV----PDWLLPMDVMRNGRPPS 258
            AL  A S M+K  +GKV VVAELAKE GF D+ G  PPSIRSL+F+LP ++FP++  E      S+V    PD+LLP      G PP+
Sbjct:  323 ALLTANSDMMKERSGKVVVVAELAKELGFTDVDGRLPPSIRSLKFILPNFVFPQIEKESGSSLPSWVTDNVPDYLLPWSTFSGGPPPT 410          
BLAST of mRNA_F-distichus_contig107777.660.1 vs. uniprot
Match: F0Y356_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y356_AURAN)

HSP 1 Score: 74.3 bits (181), Expect = 8.520e-14
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   34 IMVKTGKVQVVAELAKEYGFDDLGGNRPPSIRSLRFLLPTYLFPKVLPEGVEVAASF----VPDWLLPMDVMRNGRPP 255
            ++ ++G V+V+AELA E+GFDD+ G RP SIRSLR+LLP ++FP+V  E  +   ++    VPD LLP  V   G PP
Sbjct:  251 LLARSGNVEVIAELADEFGFDDVDGARPCSIRSLRYLLPNFVFPQVEKEAGKPVPAWIRDNVPDVLLPWSVFSAGPPP 328          
BLAST of mRNA_F-distichus_contig107777.660.1 vs. uniprot
Match: A0A8J9X4G2_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X4G2_PHATR)

HSP 1 Score: 73.6 bits (179), Expect = 1.650e-13
Identity = 43/87 (49.43%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   13 ALAAAPSIMVKTGKVQVVAELAKEYGFDDLGGNRPPSIRSLRFLLPTYLFPKVLPEGVEVAASFVPDWLLPMD-----VMRNGRPPS 258
            A A  PS M KTG  QVVAEL++EY F D+ GNRPPSIRSLRFLLP+Y F        +     VP W+         VM  G+PP+
Sbjct:  255 ATATDPSNMRKTGTYQVVAELSEEYNFFDVNGNRPPSIRSLRFLLPSYAFD-------QATRDMVPGWMXXXXXXXXXVMAQGQPPA 334          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107777.660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFH4_ECTSI2.810e-3574.42Short-chain dehydrogenase/reductase n=2 Tax=Ectoca... [more]
A0A7S2GC83_9STRA8.290e-2057.65Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6U5IRZ3_9STRA9.310e-1852.94Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4EH97_9STRA1.370e-1550.00Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A8J5XNA8_DIALT1.470e-1552.81Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S0LBI5_9EUKA2.280e-1551.28Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A1Z5JS15_FISSO2.390e-1449.38Dehydrogenase/reductase SDR family member 1 n=2 Ta... [more]
A0A7S2Q2P0_9STRA6.260e-1450.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
F0Y356_AURAN8.520e-1448.72Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J9X4G2_PHATR1.650e-1349.43Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107777contigF-distichus_contig107777:4..897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue8.6e-30
Seed eggNOG ortholog2880.D8LFH4
Preferred nameDHRS1
KEGG rclassRC00029,RC00117
KEGG koko:K00059,ko:K08141,ko:K11163,ko:K13237
KEGG TC2.A.1.1
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,ko04146,map00061,map00333,map00780,map01040,map01100,map01130,map01212,map04146
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0012505,GO:0015980,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0055114,GO:0071704
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
EC1.1.1.100,1.3.1.34
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko02000
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929010.5860295-CDS-F-distichus_contig107777:3..571622929010.5860295-CDS-F-distichus_contig107777:3..57Fucus distichus monoicousCDSF-distichus_contig107777 4..57 +
1690885105.0309393-CDS-F-distichus_contig107777:3..571690885105.0309393-CDS-F-distichus_contig107777:3..57Fucus distichus monoicousCDSF-distichus_contig107777 4..57 +
1622929010.5961044-CDS-F-distichus_contig107777:690..8971622929010.5961044-CDS-F-distichus_contig107777:690..897Fucus distichus monoicousCDSF-distichus_contig107777 691..897 +
1690885105.047651-CDS-F-distichus_contig107777:690..8971690885105.047651-CDS-F-distichus_contig107777:690..897Fucus distichus monoicousCDSF-distichus_contig107777 691..897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107777.660.1prot_F-distichus_contig107777.660.1Fucus distichus monoicouspolypeptideF-distichus_contig107777 4..897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107777.660.1

>prot_F-distichus_contig107777.660.1 ID=prot_F-distichus_contig107777.660.1|Name=mRNA_F-distichus_contig107777.660.1|organism=Fucus distichus monoicous|type=polypeptide|length=87bp
RAGAALAAAPSIMVKTGKVQVVAELAKEYGFDDLGGNRPPSIRSLRFLLP
TYLFPKVLPEGVEVAASFVPDWLLPMDVMRNGRPPS*
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mRNA from alignment at F-distichus_contig107777:4..897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107777.660.1 ID=mRNA_F-distichus_contig107777.660.1|Name=mRNA_F-distichus_contig107777.660.1|organism=Fucus distichus monoicous|type=mRNA|length=894bp|location=Sequence derived from alignment at F-distichus_contig107777:4..897+ (Fucus distichus monoicous)
CGAGCCGGGGCGGCGCTTGCGGCAGCGCCCTCGATTATGGTCAAGACGGG GAAGGTATGGTACGCCGCGTGCTCACGGGACGTAACAGGATGGGAGTCTC TCTCATGGCATGGCATCATTTTGCAGCTTTTGGGTGTTTGCAGCCATTAT GGATAACGGGGAGAATCTTGCCCTTTACCCATCTCTCGAGATTACAATTC CCGGAGGTGCCATTTTATTTTACTTTGTTTTTTTGCACGCTTCATTGGGC GGACCGGACCGCACCTTTCCGAAGCCACAGGTGGTCTATTATACAGTAGT AGTAGGTCTAGAGCTTTACTTTAGTGAAGAACATTCCAGTTTATGTCGTT CGTTAAGAGGTAGGAGGTGGTGGTGGGGGGGAGGCGGTTCCGTCGGAAGA AAGAGGGGATACGAGGGGATATCATCGTGCCACACGGTATTTCAAGGCAA ATTTCTCCCAGTCCCCCTTTTCCTGAAGACGTTCCAAAACCTCACGGGTG CTGCCTGAGAGCGAGAAGGTAGGGGACGGTTTTGCCAATGCCACGTACTG GTACATGTGACGGCGTTTTATATAATAACTTATTGCATCGGGGGAAGACC CAGGCTGCGCCTTGGACCATTGGTGCAATGAGGCACACGATGTTCCAAAC CCAAACCCTCCTCCGGGAAACCCCGTGTGCGATTCAGGTCCAGGTGGTGG CAGAGCTGGCGAAAGAATACGGTTTCGACGACTTGGGCGGAAACCGCCCG CCCTCCATCCGCAGCCTTAGGTTCCTCCTGCCTACGTATCTTTTCCCGAA GGTGCTACCAGAGGGCGTCGAAGTTGCAGCAAGTTTCGTTCCGGATTGGC TGCTTCCGATGGATGTCATGCGCAACGGCAGACCTCCGTCATGA
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Coding sequence (CDS) from alignment at F-distichus_contig107777:4..897+

>mRNA_F-distichus_contig107777.660.1 ID=mRNA_F-distichus_contig107777.660.1|Name=mRNA_F-distichus_contig107777.660.1|organism=Fucus distichus monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at F-distichus_contig107777:4..897+ (Fucus distichus monoicous)
CGAGCCGGGGCGGCGCTTGCGGCAGCGCCCTCGATTATGGTCAAGACGGG
GAAGCGAGCCGGGGCGGCGCTTGCGGCAGCGCCCTCGATTATGGTCAAGA
CGGGGAAGGTCCAGGTGGTGGCAGAGCTGGCGAAAGAATACGGTTTCGAC
GACTTGGGCGGAAACCGCCCGCCCTCCATCCGCAGCCTTAGGTTCCTCCT
GCCTACGTATCTTTTCCCGAAGGTGCTACCAGAGGGCGTCGAAGTTGCAG
CAAGTTTCGTTCCGGATTGGCTGCTTCCGATGGATGTCATGCGCAACGGC
AGACCTCCGTCATGAGTCCAGGTGGTGGCAGAGCTGGCGAAAGAATACGG
TTTCGACGACTTGGGCGGAAACCGCCCGCCCTCCATCCGCAGCCTTAGGT
TCCTCCTGCCTACGTATCTTTTCCCGAAGGTGCTACCAGAGGGCGTCGAA
GTTGCAGCAAGTTTCGTTCCGGATTGGCTGCTTCCGATGGATGTCATGCG
CAACGGCAGACCTCCGTCATGA
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