mRNA_F-distichus_contig107774.659.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107774.659.1
Unique NamemRNA_F-distichus_contig107774.659.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107774.659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107774contigF-distichus_contig107774:544..1118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size575
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107774.659.1prot_F-distichus_contig107774.659.1Fucus distichus monoicouspolypeptideF-distichus_contig107774 560..970 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929010.5425851-UTR-F-distichus_contig107774:543..5591622929010.5425851-UTR-F-distichus_contig107774:543..559Fucus distichus monoicousUTRF-distichus_contig107774 544..559 +
1690885104.9916306-UTR-F-distichus_contig107774:543..5591690885104.9916306-UTR-F-distichus_contig107774:543..559Fucus distichus monoicousUTRF-distichus_contig107774 544..559 +
1622929010.560516-UTR-F-distichus_contig107774:970..11181622929010.560516-UTR-F-distichus_contig107774:970..1118Fucus distichus monoicousUTRF-distichus_contig107774 971..1118 +
1690885105.013953-UTR-F-distichus_contig107774:970..11181690885105.013953-UTR-F-distichus_contig107774:970..1118Fucus distichus monoicousUTRF-distichus_contig107774 971..1118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929010.5512-CDS-F-distichus_contig107774:559..9701622929010.5512-CDS-F-distichus_contig107774:559..970Fucus distichus monoicousCDSF-distichus_contig107774 560..970 +
1690885105.001838-CDS-F-distichus_contig107774:559..9701690885105.001838-CDS-F-distichus_contig107774:559..970Fucus distichus monoicousCDSF-distichus_contig107774 560..970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107774.659.1

>prot_F-distichus_contig107774.659.1 ID=prot_F-distichus_contig107774.659.1|Name=mRNA_F-distichus_contig107774.659.1|organism=Fucus distichus monoicous|type=polypeptide|length=137bp
MSGNLCTNEFIVLHLFGTFFFERKNPSSCDCTESRTHVPTSEGFEVTHQT
TGAMCLCAFFHLFWTPSSLDAPPGDTQGEGHTGFLIHLPSAVRALIFLAS
RIWPFLSLLDREAEFCVLAISSFSARWASLSKFLVF*
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mRNA from alignment at F-distichus_contig107774:544..1118+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107774.659.1 ID=mRNA_F-distichus_contig107774.659.1|Name=mRNA_F-distichus_contig107774.659.1|organism=Fucus distichus monoicous|type=mRNA|length=575bp|location=Sequence derived from alignment at F-distichus_contig107774:544..1118+ (Fucus distichus monoicous)
TCCCTCGTCGACTGGGATGTCTGGAAATCTGTGTACTAACGAATTTATCG
TTCTCCACTTGTTTGGCACTTTTTTTTTTGAGCGGAAAAATCCTAGTTCG
TGTGACTGCACCGAGAGTCGAACCCACGTCCCAACGTCAGAAGGTTTCGA
GGTTACCCACCAAACCACCGGAGCGATGTGTTTGTGTGCTTTCTTCCATT
TATTCTGGACACCAAGTTCGTTGGACGCACCACCCGGGGACACACAGGGG
GAAGGTCACACAGGATTTCTCATTCACCTTCCTTCTGCGGTGCGTGCCTT
AATTTTTCTAGCGAGCAGGATTTGGCCATTCCTTTCCCTCCTCGACCGTG
AAGCCGAATTTTGTGTACTAGCGATTTCATCGTTCTCCGCTCGTTGGGCA
TCTTTATCTAAGTTTTTAGTTTTTTAGTGAGAAAAATACCGATTGCCGGG
ATCGAACTCACGTCCCAACGTATCAGAAGGCTACGAGGTTACCTCTGAGC
TATCGGGGCGAGTGGAAAATACATTTTGTGGAAGCGGGAAAAGCAAGGTT
TGGGTTAATAATTAATAATTTGAGG
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Coding sequence (CDS) from alignment at F-distichus_contig107774:544..1118+

>mRNA_F-distichus_contig107774.659.1 ID=mRNA_F-distichus_contig107774.659.1|Name=mRNA_F-distichus_contig107774.659.1|organism=Fucus distichus monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at F-distichus_contig107774:544..1118+ (Fucus distichus monoicous)
ATGTCTGGAAATCTGTGTACTAACGAATTTATCGTTCTCCACTTGTTTGG
CACTTTTTTTTTTGAGCGGAAAAATCCTAGTTCGTGTGACTGCACCGAGA
GTCGAACCCACGTCCCAACGTCAGAAGGTTTCGAGGTTACCCACCAAACC
ACCGGAGCGATGTGTTTGTGTGCTTTCTTCCATTTATTCTGGACACCAAG
TTCGTTGGACGCACCACCCGGGGACACACAGGGGGAAGGTCACACAGGAT
TTCTCATTCACCTTCCTTCTGCGGTGCGTGCCTTAATTTTTCTAGCGAGC
AGGATTTGGCCATTCCTTTCCCTCCTCGACCGTGAAGCCGAATTTTGTGT
ACTAGCGATTTCATCGTTCTCCGCTCGTTGGGCATCTTTATCTAAGTTTT
TAGTTTTTTAGATGTCTGGAAATCTGTGTACTAACGAATTTATCGTTCTC
CACTTGTTTGGCACTTTTTTTTTTGAGCGGAAAAATCCTAGTTCGTGTGA
CTGCACCGAGAGTCGAACCCACGTCCCAACGTCAGAAGGTTTCGAGGTTA
CCCACCAAACCACCGGAGCGATGTGTTTGTGTGCTTTCTTCCATTTATTC
TGGACACCAAGTTCGTTGGACGCACCACCCGGGGACACACAGGGGGAAGG
TCACACAGGATTTCTCATTCACCTTCCTTCTGCGGTGCGTGCCTTAATTT
TTCTAGCGAGCAGGATTTGGCCATTCCTTTCCCTCCTCGACCGTGAAGCC
GAATTTTGTGTACTAGCGATTTCATCGTTCTCCGCTCGTTGGGCATCTTT
ATCTAAGTTTTTAGTTTTTTAG
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