mRNA_F-distichus_contig107764.657.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107764.657.1
Unique NamemRNA_F-distichus_contig107764.657.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107764.657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107764contigF-distichus_contig107764:663..1678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929010.4702892-CDS-F-distichus_contig107764:662..7761622929010.4702892-CDS-F-distichus_contig107764:662..776Fucus distichus monoicousCDSF-distichus_contig107764 663..776 -
1690885104.9624083-CDS-F-distichus_contig107764:662..7761690885104.9624083-CDS-F-distichus_contig107764:662..776Fucus distichus monoicousCDSF-distichus_contig107764 663..776 -
1622929010.4809806-CDS-F-distichus_contig107764:1420..16781622929010.4809806-CDS-F-distichus_contig107764:1420..1678Fucus distichus monoicousCDSF-distichus_contig107764 1421..1678 -
1690885104.9722946-CDS-F-distichus_contig107764:1420..16781690885104.9722946-CDS-F-distichus_contig107764:1420..1678Fucus distichus monoicousCDSF-distichus_contig107764 1421..1678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107764.657.1prot_F-distichus_contig107764.657.1Fucus distichus monoicouspolypeptideF-distichus_contig107764 663..1678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107764.657.1

>prot_F-distichus_contig107764.657.1 ID=prot_F-distichus_contig107764.657.1|Name=mRNA_F-distichus_contig107764.657.1|organism=Fucus distichus monoicous|type=polypeptide|length=124bp
GSKVGLICLSNRLDFFPLPVALDEDPVHPGSPFWLWGNGTSARRSKAAAA
GSTQGFRVEKAGDDFILLSYRTPEGWRCAVEVHRFLVYVDSATSGRFTIS
GLRDRALSIPACSAVKDTLLRAR*
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mRNA from alignment at F-distichus_contig107764:663..1678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107764.657.1 ID=mRNA_F-distichus_contig107764.657.1|Name=mRNA_F-distichus_contig107764.657.1|organism=Fucus distichus monoicous|type=mRNA|length=1016bp|location=Sequence derived from alignment at F-distichus_contig107764:663..1678- (Fucus distichus monoicous)
GGATCGAAGGTGGGCTTGATCTGCCTGTCCAACAGGCTGGACTTCTTCCC
CCTCCCAGTCGCTTTGGACGAAGATCCCGTACATCCGGGCTCGCCGTTCT
GGCTGTGGGGGAACGGCACTTCCGCCCGGCGCTCGAAGGCAGCGGCCGCG
GGGTCGACGCAAGGGTTCCGAGTGGAGAAGGCCGGCGACGATTTTATCCT
TCTTTCCTACCGGACGCCGGAGGGTTGGCGGTGCGCTGTGGAGGTGCACC
GGTTTCTCGTGAGTGGGGCATGCAGGGAGGGGGAGGTTGTGATGTGTATC
AAAGCGACGTACTATGATCAAGATATCTTTGTCTGAACAGCCCCCAGGGG
GAGAGGCAAAAAATCTCCGCTTTTTTTGCATATGATAGAAATGACATTCC
ATTGTAGTCGTATGGCACGGAGAATGTTGAACCAAGTGCGCAAGTAACTG
ACAGAAATGACATCGCCCAAACACGACAGGCTGGGTTATAACCGTGTCAC
TTACCAGGCTTGGTTAACCGCTTCACTTACCAGGCACACGGCCTACGGCG
ACATGGGATACGTGTAGGGATACTCGTGCGCGACTCGCGGCATAAATTGC
GTTTATTGTCTGCTGCTGTTTCTGCTATTGCTGCCACGCCACGAGGGTTG
GCTCTGCCAAGTGATCAGGCGCCTTGGGTGCTTTTGTTTCAATCGATTTT
GGGGGAGCGCATTATCAAATCGATCTCATGCTTTTGGGAGGGGCAGTCAT
TGTTTTCGCTCGTAGTTCTCGCCTTGTCGTTGGTGTTTCGCGTCCGACTT
GCTTTATGCGCGCTTCCCAGCTTCGCGCGTCCCTCACCAAGGGCAGCGCT
GGAGGCGTTACGCCTGAGTTACGTCACCGTGCCGCCGTTCTTCCACCGCC
AGGTCTACGTGGACTCCGCCACCTCCGGGCGTTTTACAATCTCGGGCTTA
AGGGACCGCGCCCTTTCCATCCCAGCTTGTTCGGCTGTTAAAGACACCTT
GCTCCGTGCCAGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig107764:663..1678-

>mRNA_F-distichus_contig107764.657.1 ID=mRNA_F-distichus_contig107764.657.1|Name=mRNA_F-distichus_contig107764.657.1|organism=Fucus distichus monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at F-distichus_contig107764:663..1678- (Fucus distichus monoicous)
GGATCGAAGGTGGGCTTGATCTGCCTGTCCAACAGGCTGGACTTCTTCCC
CCTCCCAGTCGCTTTGGACGAAGATCCCGTACATCCGGGCTCGCCGTTCT
GGCTGTGGGGGAACGGCACTTCCGCCCGGCGCTCGAAGGCAGCGGCCGCG
GGGTCGACGCAAGGGTTCCGAGTGGAGAAGGCCGGCGACGATTTTATCCT
TCTTTCCTACCGGACGCCGGAGGGTTGGCGGTGCGCTGTGGAGGTGCACC
GGTTTCTCGGATCGAAGGTGGGCTTGATCTGCCTGTCCAACAGGCTGGAC
TTCTTCCCCCTCCCAGTCGCTTTGGACGAAGATCCCGTACATCCGGGCTC
GCCGTTCTGGCTGTGGGGGAACGGCACTTCCGCCCGGCGCTCGAAGGCAG
CGGCCGCGGGGTCGACGCAAGGGTTCCGAGTGGAGAAGGCCGGCGACGAT
TTTATCCTTCTTTCCTACCGGACGCCGGAGGGTTGGCGGTGCGCTGTGGA
GGTGCACCGGTTTCTCGTCTACGTGGACTCCGCCACCTCCGGGCGTTTTA
CAATCTCGGGCTTAAGGGACCGCGCCCTTTCCATCCCAGCTTGTTCGGCT
GTTAAAGACACCTTGCTCCGTGCCAGGTGAGTCTACGTGGACTCCGCCAC
CTCCGGGCGTTTTACAATCTCGGGCTTAAGGGACCGCGCCCTTTCCATCC
CAGCTTGTTCGGCTGTTAAAGACACCTTGCTCCGTGCCAGGTGA
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