mRNA_F-distichus_contig107098.604.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107098.604.1
Unique NamemRNA_F-distichus_contig107098.604.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig107098.604.1 vs. uniprot
Match: D7G1Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y2_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 9.980e-30
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 PTLRALASRLDPSVGIVAPPSARAVIEASPDKALYEFFDASRVTYLLPGQATVLSKGGRAVEVRATTGAVLGPPWQQAENGYIVRPAAAGGGGSGDEG-SRYF 306
            PT++ L+  L PSV +VAPPSA+AV+E        E F ASR+TY+LPGQ+TVLS GGRAVE++ATTGA+LGPPWQQAENG IVRP AA G     EG S YF
Sbjct:  100 PTIKGLSGLLKPSVRLVAPPSAKAVLE--------EHFPASRITYILPGQSTVLSAGGRAVEIKATTGAILGPPWQQAENGVIVRPVAADGDEKDPEGGSLYF 194          
BLAST of mRNA_F-distichus_contig107098.604.1 vs. uniprot
Match: A0A7S4BXP7_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BXP7_CHRCT)

HSP 1 Score: 68.6 bits (166), Expect = 1.660e-12
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   46 IVAPPSARAVIEASPDKALYEFFDASRVTYLLPGQATVLSKGGRAVEVRATTGAVLGPPWQQAENGYIVRPAAAG 270
            IVAPPSA+A +E          F  S++TYL  GQ  ++S  G +V +RAT+GA++GPPWQ  ENGY++   +AG
Sbjct:   72 IVAPPSAKAALE--------RHFAPSQITYLSSGQTKLVSAAGSSVSLRATSGALVGPPWQARENGYVLSSPSAG 138          
BLAST of mRNA_F-distichus_contig107098.604.1 vs. uniprot
Match: A0A7S4F8K0_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F8K0_CHRCT)

HSP 1 Score: 68.6 bits (166), Expect = 2.260e-11
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   46 IVAPPSARAVIEASPDKALYEFFDASRVTYLLPGQATVLSKGGRAVEVRATTGAVLGPPWQQAENGYIVRPAAAG 270
            IVAPPSA+A +E          F  S++TYL  GQ  ++S  G +V +RAT+GA++GPPWQ  ENGY++   +AG
Sbjct:  196 IVAPPSAKAALE--------RHFAPSQITYLSSGQTKLVSAAGSSVSLRATSGALVGPPWQARENGYVLSSPSAG 262          
BLAST of mRNA_F-distichus_contig107098.604.1 vs. uniprot
Match: C5YTD8_SORBI (Uncharacterized protein n=3 Tax=Andropogoneae TaxID=147429 RepID=C5YTD8_SORBI)

HSP 1 Score: 67.8 bits (164), Expect = 4.070e-11
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    4 TLRALASRLDPSVGIVAPPSARAVIEASPDKALYEFFDASRVTYLLPGQATVLSKGGRAVEVRATTGAVLGPPWQQAENGYIVRPAAAGGGGSGDEGSRYF 306
            TL  L++R  P + +V  P+A+ V+++ P           RVTYL PGQ+TV+++    V V AT G VLGPPWQ+ ENGYI+ PA AG G     G  Y+
Sbjct:  170 TLTQLSARA-PDLPVVTTPNAQPVLDSLPTPF-------RRVTYLEPGQSTVVNQ---QVRVLATAGPVLGPPWQRPENGYILMPAGAGDGDESGPGLLYY 259          
BLAST of mRNA_F-distichus_contig107098.604.1 vs. uniprot
Match: A0A7S3XJM1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJM1_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 1.380e-10
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    4 TLRALASRLDPSVGIVAPPSARAVIEASPDKALYEFFDASRVTYLLPGQATVLSKGGRAVEVRATTGAVLGPPWQQAENGYIVR 255
            T   L   L   V I+APPSA AV++        +++   RVTYL PG    +   G+ ++V ATTGA++GPPWQ  ENGYI++
Sbjct:  170 TQATLCKTLSSDVPILAPPSAAAVLK--------KYYPEGRVTYLSPGDTIEVEVKGKTLKVTATTGALVGPPWQAKENGYILQ 245          
BLAST of mRNA_F-distichus_contig107098.604.1 vs. uniprot
Match: A0A5N5HBM0_9ROSA (BRO1 domain-containing protein BROX n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5HBM0_9ROSA)

HSP 1 Score: 63.2 bits (152), Expect = 1.930e-9
Identity = 36/84 (42.86%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    4 TLRALASRLDPSVGIVAPPSARAVIEASPDKALYEFFDASRVTYLLPGQATVLSKG-GRAVEVRATTGAVLGPPWQQAENGYIV 252
            TL+ L+ +  P++ ++A P+A+A++++     L+     S VTYL PGQ++++  G G  V+V+AT G VLGPPWQ+ ENGY+V
Sbjct:  338 TLKPLSKKY-PNLRVIATPNAKALLDS-----LF-----SNVTYLEPGQSSIIEAGNGSTVKVQATAGPVLGPPWQRPENGYLV 410          
BLAST of mRNA_F-distichus_contig107098.604.1 vs. uniprot
Match: A0A498HF70_MALDO (Uncharacterized protein n=2 Tax=Maleae TaxID=721813 RepID=A0A498HF70_MALDO)

HSP 1 Score: 62.4 bits (150), Expect = 3.140e-9
Identity = 36/84 (42.86%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    4 TLRALASRLDPSVGIVAPPSARAVIEASPDKALYEFFDASRVTYLLPGQATVLSKG-GRAVEVRATTGAVLGPPWQQAENGYIV 252
            TL+ L+ +  P++ ++A P+A+A+++      L+     S VTYL PGQ++++  G G  V+V+AT G VLGPPWQ+ ENGY+V
Sbjct:  150 TLKPLSEKY-PNLRVIATPNAKALLDP-----LF-----SNVTYLEPGQSSIIEAGNGSTVKVQATAGPVLGPPWQRPENGYLV 222          
BLAST of mRNA_F-distichus_contig107098.604.1 vs. uniprot
Match: A0A833VBM6_9POAL (Beta-lactamase superfamily domain-containing protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VBM6_9POAL)

HSP 1 Score: 62.0 bits (149), Expect = 4.630e-9
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    4 TLRALASRLDPSVGIVAPPSARAVIEASPDKALYEFFDASRVTYLLPGQATVLS-KGGRAVEVRATTGAVLGPPWQQAENGYIVRPAAAG 270
            TL  L+ R +P + +VA P+A +++E      L+       VTYL PG+ T L  K G  V + AT G VLGPPWQ+ ENGYIV+P   G
Sbjct:  196 TLTPLSQR-NPDLPVVATPNAESILEP-----LFR-----NVTYLEPGERTDLEGKSGAKVNICATAGPVLGPPWQRPENGYIVKPGENG 274          
BLAST of mRNA_F-distichus_contig107098.604.1 vs. uniprot
Match: A0A200Q444_9MAGN (BRO1 domain n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200Q444_9MAGN)

HSP 1 Score: 61.6 bits (148), Expect = 6.820e-9
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    4 TLRALASRLDPSVGIVAPPSARAVIEASPDKALYEFFDASRVTYLLPGQ-ATVLSKGGRAVEVRATTGAVLGPPWQQAENGYIV 252
            TL+ L+  L P++ ++A P+A A++       L+     S VTYL PGQ + ++ K G  V+VRAT G VLGPPWQ+ ENGY+V
Sbjct:  467 TLKPLSEML-PNLPVIATPNAEALLNP-----LF-----SNVTYLEPGQNSEIVGKNGSNVQVRATAGPVLGPPWQRPENGYLV 539          
BLAST of mRNA_F-distichus_contig107098.604.1 vs. uniprot
Match: A0A1Q3AUC7_CEPFO (Lactamase_B_3 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3AUC7_CEPFO)

HSP 1 Score: 60.8 bits (146), Expect = 1.100e-8
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    4 TLRALASRLDPSVGIVAPPSARAVIEASPDKALYEFFDASRVTYLLPGQATVL-SKGGRAVEVRATTGAVLGPPWQQAENGYIV 252
            TL+ L S + P++ ++A P+A+A+        L+  F    VTY+ PGQ+++  ++ G  V V+AT G VLGPPWQ  ENGYIV
Sbjct:  147 TLKPL-SEMSPNLKVIATPNAKAL--------LHPLF--RNVTYIKPGQSSITEARNGHKVRVKATAGPVLGPPWQNPENGYIV 219          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107098.604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y2_ECTSI9.980e-3063.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4BXP7_CHRCT1.660e-1246.67Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S4F8K0_CHRCT2.260e-1146.67Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
C5YTD8_SORBI4.070e-1143.56Uncharacterized protein n=3 Tax=Andropogoneae TaxI... [more]
A0A7S3XJM1_HETAK1.380e-1042.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5N5HBM0_9ROSA1.930e-942.86BRO1 domain-containing protein BROX n=1 Tax=Pyrus ... [more]
A0A498HF70_MALDO3.140e-942.86Uncharacterized protein n=2 Tax=Maleae TaxID=72181... [more]
A0A833VBM6_9POAL4.630e-944.44Beta-lactamase superfamily domain-containing prote... [more]
A0A200Q444_9MAGN6.820e-945.24BRO1 domain n=1 Tax=Macleaya cordata TaxID=56857 R... [more]
A0A1Q3AUC7_CEPFO1.100e-842.86Lactamase_B_3 domain-containing protein n=1 Tax=Ce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107098contigF-distichus_contig107098:465..1566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue6.4e-24
Seed eggNOG ortholog2880.D7G1Y2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Beta-lactamase superfamily domain
EggNOG OGs2QQUU@2759,COG2220@1
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-07_003700.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.3612623-CDS-F-distichus_contig107098:464..5691622928998.3612623-CDS-F-distichus_contig107098:464..569Fucus distichus monoicousCDSF-distichus_contig107098 465..569 +
1690885099.4002662-CDS-F-distichus_contig107098:464..5691690885099.4002662-CDS-F-distichus_contig107098:464..569Fucus distichus monoicousCDSF-distichus_contig107098 465..569 +
1622928998.378026-CDS-F-distichus_contig107098:1365..15661622928998.378026-CDS-F-distichus_contig107098:1365..1566Fucus distichus monoicousCDSF-distichus_contig107098 1366..1566 +
1690885099.4125156-CDS-F-distichus_contig107098:1365..15661690885099.4125156-CDS-F-distichus_contig107098:1365..1566Fucus distichus monoicousCDSF-distichus_contig107098 1366..1566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107098.604.1prot_F-distichus_contig107098.604.1Fucus distichus monoicouspolypeptideF-distichus_contig107098 465..1566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107098.604.1

>prot_F-distichus_contig107098.604.1 ID=prot_F-distichus_contig107098.604.1|Name=mRNA_F-distichus_contig107098.604.1|organism=Fucus distichus monoicous|type=polypeptide|length=102bp
PTLRALASRLDPSVGIVAPPSARAVIEASPDKALYEFFDASRVTYLLPGQ
ATVLSKGGRAVEVRATTGAVLGPPWQQAENGYIVRPAAAGGGGSGDEGSR
YF
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mRNA from alignment at F-distichus_contig107098:465..1566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107098.604.1 ID=mRNA_F-distichus_contig107098.604.1|Name=mRNA_F-distichus_contig107098.604.1|organism=Fucus distichus monoicous|type=mRNA|length=1102bp|location=Sequence derived from alignment at F-distichus_contig107098:465..1566+ (Fucus distichus monoicous)
CCGACGTTGCGGGCATTGGCCAGTCGCCTCGACCCGTCAGTGGGCATCGT TGCGCCTCCGAGCGCGCGGGCGGTCATCGAGGCGAGTCCCGACAAAGCCC TGTATGTTGTGCCCCACGTTCGGAAGCGGAAGTCCTATGGCAGGCGCGTC TCATTTTTCTTCATCCTAGAGAGTATGTTTGTATGTATATGTATGTATGT ATCTATATATACATGTACCGGTATGTATGTATGTATATTTATAAAATTGC ACATAACCGCGCAATCCGGCCCTGACATCCTAGTCATTCTATGCGGCACT CGTGTTGATCCTCCCAAGCGGGGATCAATGAAACTTATTACGAATGTATG TATGTATGTATGTATGTATGCAATATACATGCATGTATGAATGTATGTAT GTATGGCCATCGCATATAGTAGAGTATGGATCTGTTACTTGATAGCCAAA CCAGTGGACTACTCAGTCACGGGTAAGGTTGCCAATCCTGCTCGTGGTCA GCTTGACAAGGAAAATGAATATCCCTGTCTCCGTTCGCGCCTGAAAATTT GGTCTCACGAGACGGGTTCGGCCGTCCCGTCCCGCGTCAGCCTGCTCATT CTCCACACTCAGGCTGAATCTGATGCTTACTCACGCGATTCCTACCGATT TCCGCGGTGGCGTTTACGTTGATTGGACGCCCCCCCACAAACATGCATAT TTACGGAATCACATAACTTTGCAGAGCTCATCCTATACAGCGACGTCTCT GATCAGTCAGCCTTCTTTGCCACAGTAGCACAGTGGTATATTGGTCTCCC CGTGCCTTAAAAGCTTCCCTCTACGCTCATGCGATTCGGCTCGGCCTCTT AACAGCTTTTGATGCCCCCCCCACCCCTCTTCCCTACCCATCACTCCGTA GGAGTTTTTCGACGCTTCGCGAGTGACGTATCTGCTGCCGGGACAGGCGA CGGTCCTGTCTAAGGGCGGTCGCGCGGTGGAGGTGCGCGCGACGACCGGG GCCGTCCTGGGGCCTCCCTGGCAACAGGCCGAAAATGGTTACATCGTTCG TCCAGCGGCGGCGGGAGGAGGCGGCAGCGGCGACGAAGGTTCGCGCTACT TT
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Coding sequence (CDS) from alignment at F-distichus_contig107098:465..1566+

>mRNA_F-distichus_contig107098.604.1 ID=mRNA_F-distichus_contig107098.604.1|Name=mRNA_F-distichus_contig107098.604.1|organism=Fucus distichus monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at F-distichus_contig107098:465..1566+ (Fucus distichus monoicous)
CCGACGTTGCGGGCATTGGCCAGTCGCCTCGACCCGTCAGTGGGCATCGT
TGCGCCTCCGAGCGCGCGGGCGGTCATCGAGGCGAGTCCCGACAAAGCCC
TGTATCCGACGTTGCGGGCATTGGCCAGTCGCCTCGACCCGTCAGTGGGC
ATCGTTGCGCCTCCGAGCGCGCGGGCGGTCATCGAGGCGAGTCCCGACAA
AGCCCTGTATGAGTTTTTCGACGCTTCGCGAGTGACGTATCTGCTGCCGG
GACAGGCGACGGTCCTGTCTAAGGGCGGTCGCGCGGTGGAGGTGCGCGCG
ACGACCGGGGCCGTCCTGGGGCCTCCCTGGCAACAGGCCGAAAATGGTTA
CATCGTTCGTCCAGCGGCGGCGGGAGGAGGCGGCAGCGGCGACGAAGGTT
CGCGCTACTTTGAGTTTTTCGACGCTTCGCGAGTGACGTATCTGCTGCCG
GGACAGGCGACGGTCCTGTCTAAGGGCGGTCGCGCGGTGGAGGTGCGCGC
GACGACCGGGGCCGTCCTGGGGCCTCCCTGGCAACAGGCCGAAAATGGTT
ACATCGTTCGTCCAGCGGCGGCGGGAGGAGGCGGCAGCGGCGACGAAGGT
TCGCGCTACTTT
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