mRNA_F-distichus_contig107084.601.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107084.601.1
Unique NamemRNA_F-distichus_contig107084.601.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig107084.601.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.200e-38
Identity = 89/145 (61.38%), Postives = 100/145 (68.97%), Query Frame = 1 
Query:    1 SRAAAAIRARASSAPKVRKRWCVLDAMRFTLFRTRNRHKVKDHVPLDPRTVVLVTPPFTP------------------SKGKDDPTSDRDAVALVCFDMPPEMGTLVIRAEHVGAQEVWMHALAARLTSKDHNTRMAELYGGAAG 381
            SRAA AIRARA+ APKVRKRWCVLDA R TLFRTR + +VK+ V LDP  V LVTPPFTP                      +D T++RDAVALV F  P E GTLVIRAE V AQ VW+ ALAARLTS++H+ RMAELYGG AG
Sbjct: 4704 SRAAMAIRARANGAPKVRKRWCVLDATRLTLFRTRTKTRVKESVQLDPSRVALVTPPFTPWGRAGGGVXXXXXXXXXXXXXGEDVTNERDAVALVVFRNPTETGTLVIRAESVEAQHVWVRALAARLTSREHHARMAELYGGGAG 4848
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107084.601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYV2_ECTSI1.200e-3861.38PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107084contigF-distichus_contig107084:30..1175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1146
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107084.601.1prot_F-distichus_contig107084.601.1Fucus distichus monoicouspolypeptideF-distichus_contig107084 108..416 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.1291463-UTR-F-distichus_contig107084:29..1071622928998.1291463-UTR-F-distichus_contig107084:29..107Fucus distichus monoicousUTRF-distichus_contig107084 30..107 +
1690885099.3253353-UTR-F-distichus_contig107084:29..1071690885099.3253353-UTR-F-distichus_contig107084:29..107Fucus distichus monoicousUTRF-distichus_contig107084 30..107 +
1622928998.1575496-UTR-F-distichus_contig107084:416..11751622928998.1575496-UTR-F-distichus_contig107084:416..1175Fucus distichus monoicousUTRF-distichus_contig107084 417..1175 +
1690885099.3591764-UTR-F-distichus_contig107084:416..11751690885099.3591764-UTR-F-distichus_contig107084:416..1175Fucus distichus monoicousUTRF-distichus_contig107084 417..1175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.1460326-CDS-F-distichus_contig107084:107..4161622928998.1460326-CDS-F-distichus_contig107084:107..416Fucus distichus monoicousCDSF-distichus_contig107084 108..416 +
1690885099.3454735-CDS-F-distichus_contig107084:107..4161690885099.3454735-CDS-F-distichus_contig107084:107..416Fucus distichus monoicousCDSF-distichus_contig107084 108..416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107084.601.1

>prot_F-distichus_contig107084.601.1 ID=prot_F-distichus_contig107084.601.1|Name=mRNA_F-distichus_contig107084.601.1|organism=Fucus distichus monoicous|type=polypeptide|length=103bp
MRFTLFRTRNRHKVKDHVPLDPRTVVLVTPPFTPSKGKDDPTSDRDAVAL
VCFDMPPEMGTLVIRAEHVGAQEVWMHALAARLTSKDHNTRMAELYGGAA
GY*
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mRNA from alignment at F-distichus_contig107084:30..1175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107084.601.1 ID=mRNA_F-distichus_contig107084.601.1|Name=mRNA_F-distichus_contig107084.601.1|organism=Fucus distichus monoicous|type=mRNA|length=1146bp|location=Sequence derived from alignment at F-distichus_contig107084:30..1175+ (Fucus distichus monoicous)
TCGCGAGCTGCGGCCGCGATAAGAGCAAGGGCTTCCAGCGCGCCGAAGGT
CAGGAAGCGCTGGTGCGTACTGGACGCCATGCGCTTCACCCTCTTCCGCA
CTCGCAACAGGCACAAGGTAAAGGATCACGTGCCGCTCGATCCCCGAACC
GTCGTCCTGGTGACGCCGCCGTTCACGCCTTCGAAGGGCAAGGATGATCC
TACCAGCGATCGAGACGCGGTGGCCCTGGTCTGCTTCGACATGCCTCCTG
AGATGGGCACGCTTGTCATTCGGGCGGAGCACGTCGGCGCCCAGGAAGTA
TGGATGCACGCGCTCGCGGCGAGGCTGACGAGCAAGGACCACAATACTCG
AATGGCGGAACTCTACGGCGGTGCAGCGGGTTATTGATGATTGATGATGA
CAACATCGACTGATGGTGACTACATTGATGACGATGACTACATTAATCAG
GGTGGTACATGTTTTAAGTGCCTAATGCCGCCACTTCATGAGGGGATATG
TTTCCATCCGGGGGTAATATCCTTCTATGGGTGACGTGGATCCTAAATGA
TACTAGGAATGTAGTCATTCCCGTAGCGCTTGATCTCGATTAAAGTAACA
GGTTGAATTACCGCAAATTTGACGTCTAGATGCATGATGATGGTAATAAT
TGCATCGGAAAGGGAACGAAGATATGGTCTACGTGCTCCGGAAATAAGCA
CATCATGTTTGTTTTTTTCGTTTCGGTTTGGTTTGGATAATAATTAATAG
ATCACTCGTAGGGGTGTTGTTGGTGGAAGAGGGTGTAATTGGATGGCCAC
AGGGCACAGCCCGCTTTGTGCTCTACTCTGAGTTCATGTCTTATTCCGTA
CTCCAAATATCTCTCCCGAGTGAACCAGGTGTTTGTACTTGCCAAGGCTC
TTGCGCGATATGTTCTGTTAGGCACGTGTTTGTTTGATCCATTTCCAGGC
TAATATTGTAGTATGTTCGTGTGGTACTACTCATACAGTATTAATTATTG
GTTGGTCGATCGAACACCAAGACGTATTCCTTAGCATTATTGTTAGATTC
GACATGATTGCCTACGATTTCCAAGGGCCGTTTTGCTCCTGGCGAGAACT
AAACTACACCATGAAAATATATGTTGACGCCCTTACGAGCTAATAA
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Coding sequence (CDS) from alignment at F-distichus_contig107084:30..1175+

>mRNA_F-distichus_contig107084.601.1 ID=mRNA_F-distichus_contig107084.601.1|Name=mRNA_F-distichus_contig107084.601.1|organism=Fucus distichus monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at F-distichus_contig107084:30..1175+ (Fucus distichus monoicous)
ATGCGCTTCACCCTCTTCCGCACTCGCAACAGGCACAAGGTAAAGGATCA
CGTGCCGCTCGATCCCCGAACCGTCGTCCTGGTGACGCCGCCGTTCACGC
CTTCGAAGGGCAAGGATGATCCTACCAGCGATCGAGACGCGGTGGCCCTG
GTCTGCTTCGACATGCCTCCTGAGATGGGCACGCTTGTCATTCGGGCGGA
GCACGTCGGCGCCCAGGAAGTATGGATGCACGCGCTCGCGGCGAGGCTGA
CGAGCAAGGACCACAATACTCGAATGGCGGAACTCTACGGCGGTGCAGCG
GGTTATTGAATGCGCTTCACCCTCTTCCGCACTCGCAACAGGCACAAGGT
AAAGGATCACGTGCCGCTCGATCCCCGAACCGTCGTCCTGGTGACGCCGC
CGTTCACGCCTTCGAAGGGCAAGGATGATCCTACCAGCGATCGAGACGCG
GTGGCCCTGGTCTGCTTCGACATGCCTCCTGAGATGGGCACGCTTGTCAT
TCGGGCGGAGCACGTCGGCGCCCAGGAAGTATGGATGCACGCGCTCGCGG
CGAGGCTGACGAGCAAGGACCACAATACTCGAATGGCGGAACTCTACGGC
GGTGCAGCGGGTTATTGA
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