mRNA_F-distichus_contig107032.598.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107032.598.1
Unique NamemRNA_F-distichus_contig107032.598.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig107032.598.1 vs. uniprot
Match: D7FSD7_ECTSI (Nicastrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD7_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 5.530e-23
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 AQACLGWTDIGGERSPQCLPLGGQSSWASVGPPGMPQRETVLAAAGMDSTSLFHDRAPG 177
            +Q CLGWTDI G+RSPQC PLGGQSSWASVG  G+  R+TVLA +GMDSTS+FHDRAPG
Sbjct:  305 SQECLGWTDINGDRSPQCKPLGGQSSWASVGGAGLGGRQTVLAVSGMDSTSMFHDRAPG 363
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BLAST of mRNA_F-distichus_contig107032.598.1 vs. uniprot
Match: A0A7S4DDP0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDP0_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 1.190e-13
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   10 CLGWTDIGGERSPQCLPLGGQSSWASVGPPGMPQRETVLAAAGMDSTSLFHDRAPG 177
            CL W D+ G R PQCLPLGGQS W ++GP     R  VLA AGMDS + FHDRA G
Sbjct:    1 CLAWEDVDGRRDPQCLPLGGQSVWGTLGPRDA-GRPAVLAVAGMDSAAFFHDRADG 55
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BLAST of mRNA_F-distichus_contig107032.598.1 vs. uniprot
Match: A0A7S2V4V2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.450e-12
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   10 CLGWTDIGGERSPQCLPLGGQSSWASVGPPGMPQRETVLAAAGMDSTSLFHDRAPGEA 183
            CL W DI GER PQCLPLGG S+WAS+  P  P +  V   A +DS +LFHD+ P  +
Sbjct:   19 CLAWQDIDGERDPQCLPLGGLSTWASLPGPPDPVKPKVFLTAAIDSATLFHDQVPAAS 76
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BLAST of mRNA_F-distichus_contig107032.598.1 vs. uniprot
Match: G4ZR63_PHYSP (Nicastrin n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZR63_PHYSP)

HSP 1 Score: 61.6 bits (148), Expect = 1.920e-9
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   10 CLGWTDIGGERSPQCLPLGGQSSWASVGPPGMPQRETVLAAAGMDSTSLFHDRAPG 177
            CL +T+I G RSP+C P+GGQSSWA  G   +   E V+A AGMD+TS+ H  APG
Sbjct:  212 CLNFTNIYGNRSPKCDPIGGQSSWAMRG--NLKSGEIVMAMAGMDATSVSHVLAPG 265
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BLAST of mRNA_F-distichus_contig107032.598.1 vs. uniprot
Match: V9FWN4_PHYPR (Nicastrin n=11 Tax=Phytophthora TaxID=4783 RepID=V9FWN4_PHYPR)

HSP 1 Score: 60.8 bits (146), Expect = 3.590e-9
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   10 CLGWTDIGGERSPQCLPLGGQSSWASVGPPGMPQRETVLAAAGMDSTSLFHDRAPG 177
            CL +T+I G RSP+C P+GGQSSWA  G   +   E V+A AGMD+ SL H  APG
Sbjct:  208 CLSFTNIYGNRSPKCDPIGGQSSWAMRG--NLKSGEIVMAMAGMDANSLSHVLAPG 261
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BLAST of mRNA_F-distichus_contig107032.598.1 vs. uniprot
Match: A0A0P1B109_PLAHL (Nicastrin n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B109_PLAHL)

HSP 1 Score: 59.7 bits (143), Expect = 9.170e-9
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   10 CLGWTDIGGERSPQCLPLGGQSSWASVGPPGMPQRETVLAAAGMDSTSLFHDRAPG 177
            CL +T+I G+RSP C P+GGQSSWA  G   +  +E V+A AGMD+T+L    APG
Sbjct:  210 CLSFTNIYGDRSPMCDPIGGQSSWAMRG--NLASKEIVMAMAGMDATALSPVLAPG 263
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BLAST of mRNA_F-distichus_contig107032.598.1 vs. uniprot
Match: A0A662XXH7_9STRA (PEROXIDASE_4 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXH7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.710e-8
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   10 CLGWTDIGGERSPQCLPLGGQSSWASVGPPGMPQRETVLAAAGMDSTSLFHDRAPG 177
            CL +T+I G RSP+C P+GGQSSWA  G   +     VL  AGMD+T+L H  APG
Sbjct:  580 CLAFTNIYGNRSPKCDPIGGQSSWAMRG--NLDAEXXVLVMAGMDATALSHVLAPG 633
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BLAST of mRNA_F-distichus_contig107032.598.1 vs. uniprot
Match: A0A1Z5JDZ1_FISSO (Nicastrin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDZ1_FISSO)

HSP 1 Score: 58.9 bits (141), Expect = 1.720e-8
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:   10 CLGWTDIGGER-SPQCLPLGGQSSWASVGPP----------GMPQRETVLAAAGMDSTSLFHDRAPG 177
            CL W D+   + +P+CLP+GG S WA+ G P              R  V+ AAGMDSTS+FHD +PG
Sbjct:  215 CLAWKDVATNQWNPKCLPIGGTSVWATPGSPPSYGDSENDNNANNRPVVVLAAGMDSTSMFHDISPG 281
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BLAST of mRNA_F-distichus_contig107032.598.1 vs. uniprot
Match: A0A7S2W2W1_9STRA (Nicastrin (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W2W1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.720e-8
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    1 AQACLGWTDIG-GERSPQCLPLGGQSSWASV-GPPGMPQRETVLAAAGMDSTSLFHDRAPG 177
            + ACL W DI  G  SP+CLPLGG S WAS  G  G  Q++T+   + +D+TS+FHD A G
Sbjct:  207 SSACLTWKDISDGNWSPKCLPLGGNSVWASTQGQLG--QKKTLFLTSNLDATSMFHDAASG 265
[Close]
BLAST of mRNA_F-distichus_contig107032.598.1 vs. uniprot
Match: A0A421ET76_9STRA (Nicastrin n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421ET76_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.200e-8
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   10 CLGWTDIGGERSPQCLPLGGQSSWASVGPPGMPQRETVLAAAGMDSTSLFHDRAPG 177
            CL +T+I G  SP+C P+GGQSSWA  G   +   E VLA AGMDS +L H  +PG
Sbjct:  165 CLNFTNIYGNPSPKCDPIGGQSSWAMRGK--LDSEEIVLAMAGMDSAALSHVLSPG 218
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107032.598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FSD7_ECTSI5.530e-2376.27Nicastrin n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A7S4DDP0_HETAK1.190e-1360.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V4V2_9STRA1.450e-1253.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
G4ZR63_PHYSP1.920e-955.36Nicastrin n=1 Tax=Phytophthora sojae (strain P6497... [more]
V9FWN4_PHYPR3.590e-955.36Nicastrin n=11 Tax=Phytophthora TaxID=4783 RepID=V... [more]
A0A0P1B109_PLAHL9.170e-953.57Nicastrin n=1 Tax=Plasmopara halstedii TaxID=4781 ... [more]
A0A662XXH7_9STRA1.710e-853.57PEROXIDASE_4 domain-containing protein (Fragment) ... [more]
A0A1Z5JDZ1_FISSO1.720e-844.78Nicastrin n=2 Tax=Fistulifera solaris TaxID=151956... [more]
A0A7S2W2W1_9STRA2.720e-850.82Nicastrin (Fragment) n=1 Tax=Eucampia antarctica T... [more]
A0A421ET76_9STRA3.200e-853.57Nicastrin n=2 Tax=Phytophthora kernoviae TaxID=325... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107032contigF-distichus_contig107032:1673..1879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog2880.D7FSD7
Preferred nameNCSTN
KEGG koko:K06171
KEGG Pathwayko04330,ko05010,map04330,map05010
KEGG ModuleM00682
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001775,GO:0002252,GO:0002262,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005886,GO:0005887,GO:0006508,GO:0006509,GO:0006518,GO:0006807,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006955,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007220,GO:0007267,GO:0007275,GO:0007389,GO:0007399,GO:0007423,GO:0007610,GO:0008150,GO:0008152,GO:0008233,GO:0008283,GO:0008594,GO:0009653,GO:0009790,GO:0009887,GO:0009987,GO:0010467,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016485,GO:0016787,GO:0018991,GO:0019098,GO:0019538,GO:0022008,GO:0022414,GO:0022603,GO:0023052,GO:0030141,GO:0030154,GO:0030182,GO:0030587,GO:0030659,GO:0030667,GO:0031090,GO:0031154,GO:0031224,GO:0031226,GO:0031293,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032943,GO:0032989,GO:0032991,GO:0033619,GO:0034205,GO:0034641,GO:0035295,GO:0035333,GO:0035577,GO:0036230,GO:0042051,GO:0042098,GO:0042110,GO:0042119,GO:0042461,GO:0042462,GO:0042478,GO:0042582,GO:0042592,GO:0042982,GO:0042987,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043603,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044671,GO:0045055,GO:0045165,GO:0045168,GO:0045314,GO:0045321,GO:0045463,GO:0045465,GO:0045595,GO:0045664,GO:0046331,GO:0046530,GO:0046532,GO:0046649,GO:0046651,GO:0046903,GO:0048468,GO:0048513,GO:0048565,GO:0048592,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048837,GO:0048856,GO:0048869,GO:0048872,GO:0050435,GO:0050673,GO:0050767,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051604,GO:0051703,GO:0051704,GO:0051716,GO:0051960,GO:0055037,GO:0055123,GO:0060284,GO:0060465,GO:0060581,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070661,GO:0070765,GO:0071704,GO:0071840,GO:0071944,GO:0090596,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099120,GO:0099503,GO:0140096,GO:1901564,GO:2000026,GO:2000027
EggNOG free text desc.Notch signaling pathway
EggNOG OGsKOG2657@1,KOG2657@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.8934653-CDS-F-distichus_contig107032:1672..18791622928997.8934653-CDS-F-distichus_contig107032:1672..1879Fucus distichus monoicousCDSF-distichus_contig107032 1673..1879 -
1690885099.2387211-CDS-F-distichus_contig107032:1672..18791690885099.2387211-CDS-F-distichus_contig107032:1672..1879Fucus distichus monoicousCDSF-distichus_contig107032 1673..1879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107032.598.1prot_F-distichus_contig107032.598.1Fucus distichus monoicouspolypeptideF-distichus_contig107032 1673..1879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107032.598.1

>prot_F-distichus_contig107032.598.1 ID=prot_F-distichus_contig107032.598.1|Name=mRNA_F-distichus_contig107032.598.1|organism=Fucus distichus monoicous|type=polypeptide|length=69bp
AQACLGWTDIGGERSPQCLPLGGQSSWASVGPPGMPQRETVLAAAGMDST
SLFHDRAPGEAFLFLCIC*
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mRNA from alignment at F-distichus_contig107032:1673..1879-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107032.598.1 ID=mRNA_F-distichus_contig107032.598.1|Name=mRNA_F-distichus_contig107032.598.1|organism=Fucus distichus monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at F-distichus_contig107032:1673..1879- (Fucus distichus monoicous)
GCACAGGCGTGTCTGGGTTGGACCGACATCGGCGGCGAGAGATCGCCTCA
GTGTCTGCCGCTCGGGGGCCAGAGCTCGTGGGCGTCAGTAGGACCCCCGG
GAATGCCGCAGAGGGAAACCGTGCTCGCCGCCGCGGGGATGGACTCCACC
TCTCTCTTTCACGACCGCGCGCCTGGTGAGGCATTTTTGTTTCTGTGCAT
TTGTTAA
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Coding sequence (CDS) from alignment at F-distichus_contig107032:1673..1879-

>mRNA_F-distichus_contig107032.598.1 ID=mRNA_F-distichus_contig107032.598.1|Name=mRNA_F-distichus_contig107032.598.1|organism=Fucus distichus monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at F-distichus_contig107032:1673..1879- (Fucus distichus monoicous)
GCACAGGCGTGTCTGGGTTGGACCGACATCGGCGGCGAGAGATCGCCTCA
GTGTCTGCCGCTCGGGGGCCAGAGCTCGTGGGCGTCAGTAGGACCCCCGG
GAATGCCGCAGAGGGAAACCGTGCTCGCCGCCGCGGGGATGGACTCCACC
TCTCTCTTTCACGACCGCGCGCCTGGTGAGGCATTTTTGTTTCTGTGCAT
TTGTTAAGCACAGGCGTGTCTGGGTTGGACCGACATCGGCGGCGAGAGAT
CGCCTCAGTGTCTGCCGCTCGGGGGCCAGAGCTCGTGGGCGTCAGTAGGA
CCCCCGGGAATGCCGCAGAGGGAAACCGTGCTCGCCGCCGCGGGGATGGA
CTCCACCTCTCTCTTTCACGACCGCGCGCCTGGTGAGGCATTTTTGTTTC
TGTGCATTTGTTAA
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