mRNA_F-distichus_contig107015.597.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107015.597.1
Unique NamemRNA_F-distichus_contig107015.597.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig107015.597.1 vs. uniprot
Match: D7G7A9_ECTSI (Cation efflux protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A9_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 8.430e-57
Identity = 98/110 (89.09%), Postives = 106/110 (96.36%), Query Frame = 1
Query:    1 QVSTDAMAQLTDATDYDVRRRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTEGMISASAAQQVGQRVRWEILDKMPFVADVMVNIAVESKPCPAMNSLRPQEDIEQ 330
            QVSTDAMAQLTDA DYDVRR+VAE+AT+VPGVLSFDRVRARRMGPQTLVDLTIQT+ MISASAAQQ+GQRVRWEIL ++PFVADVMVNIAVE KPCPAM+SLRPQEDIEQ
Sbjct:  410 QVSTDAMAQLTDAADYDVRRKVAEIATQVPGVLSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVEPKPCPAMSSLRPQEDIEQ 519          
BLAST of mRNA_F-distichus_contig107015.597.1 vs. uniprot
Match: A0A7S4DFL3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFL3_HETAK)

HSP 1 Score: 100 bits (248), Expect = 2.290e-22
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 QVSTDAMAQLTDATDYDVRRRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTEGMISASAAQQVGQRVRWEILDKMPFVADVMVNIAVESKPCPAMNSLRPQEDIEQ 330
            Q+  +++ QLTD  + D    +     KV GVL FD +RARRMG Q LVD+ IQ +  ISA+AA Q+ +R RW +L  +P V+DV+V ++ E KPCP ++SL  QE I++
Sbjct:  323 QLGWESVKQLTDTAENDCIDEIGAAVGKVEGVLGFDNLRARRMGSQMLVDVRIQCDPYISATAAHQIAERTRWHVLKIVPQVSDVLVTVSGEQKPCPVVSSLPTQEKIQE 432          
BLAST of mRNA_F-distichus_contig107015.597.1 vs. uniprot
Match: A0A4D9D9I4_9STRA (ZT_dimer domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9I4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.650e-21
Identity = 51/109 (46.79%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 QVSTDAMAQLTDATDYDVRRRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTEGMISASAAQQVGQRVRWEILDKMPFVADVMVNIAVESKPCPAMNSLRPQEDIE 327
            Q+  D+M QLTD  + D    +  +A  V GV     VRARRMGPQ LVDL I  +  ISASAAQQV  +VRW +    P V++V+V+   E  PCP    LR   DIE
Sbjct:    8 QIFLDSMNQLTDTVESDAIPGIRRVAASVEGVRDTSDVRARRMGPQLLVDLRILVDSQISASAAQQVADQVRWRVRRDFPNVSEVLVHTVTEPLPCPLAMELRQPSDIE 116          
BLAST of mRNA_F-distichus_contig107015.597.1 vs. uniprot
Match: W7U980_9STRA (Cation efflux protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U980_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 7.670e-20
Identity = 51/109 (46.79%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 QVSTDAMAQLTDATDYDVRRRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTEGMISASAAQQVGQRVRWEILDKMPFVADVMVNIAVESKPCPAMNSLRPQEDIE 327
            Q+  D+M QLTD  + D    +  +A  V GV     VRARRMGPQ LVDL I  +  ISASAAQQV  +VRW +    P V++V+V+   E  PCP    LR   DIE
Sbjct:  504 QIFLDSMNQLTDTVESDAIPGIRRVAASVEGVRDTSDVRARRMGPQLLVDLRILVDSQISASAAQQVADQVRWRVRRDFPNVSEVLVHTVTEPLPCPLAMELRQPSDIE 612          
BLAST of mRNA_F-distichus_contig107015.597.1 vs. uniprot
Match: A0A836CQT4_9STRA (ZT_dimer domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQT4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.460e-16
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   64 VAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTEGMISASAAQQVGQRVRWEILDKMPFVADVMVNIAVESKPCPAMNSLRPQEDIE 327
            +A M   V GV  FD +R+RRMGPQTLVDLTI            Q+ QR R+ IL K+P V+DV+V  AV+ KPCP  N LRP  +IE
Sbjct:   37 LAVMLGGVEGVRGFDSIRSRRMGPQTLVDLTI------------QIAQRARFAILKKLPMVSDVIVTTAVDEKPCPVSNVLRPHGEIE 112          
BLAST of mRNA_F-distichus_contig107015.597.1 vs. uniprot
Match: A0A7S0IUC4_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IUC4_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 1.130e-15
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    1 QVSTDAMAQLTDATDYDVRRRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTEGMISASAAQQVGQRVRWEILDKMPFVADVMVNI--AVESKPCP 291
            ++  +A+ QL+D +D    + V  +A +VPGV    +VRAR MG   LVDL IQ E  +SASAA +V + VRWE+L+K+P V++V+V++  AV    CP
Sbjct:  334 RIGIEAVMQLSDTSDLVATQSVHSIAREVPGVQRAWQVRARSMGGSYLVDLAIQVESRLSASAAHKVAEEVRWEVLNKVPRVSEVLVHVDTAVHDVDCP 432          
BLAST of mRNA_F-distichus_contig107015.597.1 vs. uniprot
Match: A0A382Q3B9_9ZZZZ (ZT_dimer domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382Q3B9_9ZZZZ)

HSP 1 Score: 78.2 bits (191), Expect = 4.140e-15
Identity = 44/110 (40.00%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    4 VSTDAMAQLTD-ATDYDVRRRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTEGMISASAAQQVGQRVRWEILDKMPFVADVMVNI-AVESKPCPAMNSLRPQEDIE 327
            +  +++ +LTD   + DV   + ++ + V GV  F +VRARRMGP  LVDL ++   ++S SAA QV +RVRW ILD + +V +V++++ A E      +  +RPQE IE
Sbjct:   77 IGHESIRELTDEVAEQDVIDHIGDILSGVEGVEHFHQVRARRMGPHLLVDLHLEVNCLMSVSAAHQVAERVRWNILDNLTYVNEVLIHVDAEEDTEEGEIILMRPQEQIE 186          
BLAST of mRNA_F-distichus_contig107015.597.1 vs. uniprot
Match: A0A3D5HED6_9DELT (Cation transporter n=5 Tax=root TaxID=1 RepID=A0A3D5HED6_9DELT)

HSP 1 Score: 75.1 bits (183), Expect = 1.370e-13
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    4 VSTDAMAQLTDAT-DYDVRRRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTEGMISASAAQQVGQRVRWEILDKMPFVADVMVNIAVE 276
            +  +++ +LTD T + DV   + ++ + + GV  +  +RARRMGP  LVDL IQ + M+S SAA QV +RVR EIL+K+P V +V+V++  E
Sbjct:  197 IGYESIRELTDETVEEDVISELGKIMSGIEGVDHYHEMRARRMGPHLLVDLHIQVDSMMSISAAHQVAERVRLEILEKLPAVNEVLVHVDAE 288          
BLAST of mRNA_F-distichus_contig107015.597.1 vs. uniprot
Match: A0A1W0ABR0_9STRA (Cation Diffusion Facilitator (CDF) Family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABR0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.580e-13
Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    4 VSTDAMAQLTD-ATDYDVRRRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTEGMISASAAQQVGQRVRWEILDKMPFVADVMVNIAVESKPCPAMN--SLRPQEDI 324
            +  D++ +LTD + + D+ + +AE ++ V  V+S   +RARRMGP TLVDL        S SAAQQV  RV+ +IL +MP V++V+V+I V +    A N   + P+E +
Sbjct:  246 ICLDSVRELTDKSVEDDILKLLAETSSNVEDVVSVSNIRARRMGPYTLVDLRAYVHARTSVSAAQQVAARVKSKILKQMPEVSEVLVHIDVANNEFDASNWGHVTPEEQM 355          
BLAST of mRNA_F-distichus_contig107015.597.1 vs. uniprot
Match: A0A6G0WW55_9STRA (ZT_dimer domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW55_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.030e-12
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    4 VSTDAMAQLTD-ATDYDVRRRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTEGMISASAAQQVGQRVRWEILDKMPFVADVMVNIAVESKPCPAMNS----LRPQEDIEQ 330
            +  D++ +LTD + + +V   +   ++ V  V S   VRARRMGP TLVDL I   G  S SAAQQV  RV+ ++L ++P V++V+V+I V   P  A  +    +RP  +I+Q
Sbjct:  248 ICMDSVRELTDKSVEDEVLELLRHSSSSVEDVQSVSNVRARRMGPYTLVDLRINVHGRTSVSAAQQVAARVQAQVLRQVPDVSEVLVHIDVARDPASATGATTEQMRPYREIKQ 361          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107015.597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7A9_ECTSI8.430e-5789.09Cation efflux protein n=2 Tax=Ectocarpus siliculos... [more]
A0A7S4DFL3_HETAK2.290e-2245.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D9I4_9STRA2.650e-2146.79ZT_dimer domain-containing protein n=1 Tax=Nannoch... [more]
W7U980_9STRA7.670e-2046.79Cation efflux protein n=1 Tax=Nannochloropsis gadi... [more]
A0A836CQT4_9STRA1.460e-1651.14ZT_dimer domain-containing protein n=1 Tax=Tribone... [more]
A0A7S0IUC4_9EUKA1.130e-1544.44Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A382Q3B9_9ZZZZ4.140e-1540.00ZT_dimer domain-containing protein (Fragment) n=1 ... [more]
A0A3D5HED6_9DELT1.370e-1343.48Cation transporter n=5 Tax=root TaxID=1 RepID=A0A3... [more]
A0A1W0ABR0_9STRA5.580e-1340.00Cation Diffusion Facilitator (CDF) Family n=1 Tax=... [more]
A0A6G0WW55_9STRA1.030e-1239.47ZT_dimer domain-containing protein n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107015contigF-distichus_contig107015:1319..1921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue2.5e-44
Seed eggNOG ortholog2880.D7G7A9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cation transmembrane transporter activity
EggNOG OGsCOG0053@1,KOG1485@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size330
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107015.597.1prot_F-distichus_contig107015.597.1Fucus distichus monoicouspolypeptideF-distichus_contig107015 1319..1903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.8158236-CDS-F-distichus_contig107015:1318..14501622928997.8158236-CDS-F-distichus_contig107015:1318..1450Fucus distichus monoicousCDSF-distichus_contig107015 1319..1450 -
1690885099.2057314-CDS-F-distichus_contig107015:1318..14501690885099.2057314-CDS-F-distichus_contig107015:1318..1450Fucus distichus monoicousCDSF-distichus_contig107015 1319..1450 -
1622928997.8355238-CDS-F-distichus_contig107015:1723..19031622928997.8355238-CDS-F-distichus_contig107015:1723..1903Fucus distichus monoicousCDSF-distichus_contig107015 1724..1903 -
1690885099.2168808-CDS-F-distichus_contig107015:1723..19031690885099.2168808-CDS-F-distichus_contig107015:1723..1903Fucus distichus monoicousCDSF-distichus_contig107015 1724..1903 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.8527577-UTR-F-distichus_contig107015:1903..19211622928997.8527577-UTR-F-distichus_contig107015:1903..1921Fucus distichus monoicousUTRF-distichus_contig107015 1904..1921 -
1690885099.2263749-UTR-F-distichus_contig107015:1903..19211690885099.2263749-UTR-F-distichus_contig107015:1903..1921Fucus distichus monoicousUTRF-distichus_contig107015 1904..1921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107015.597.1

>prot_F-distichus_contig107015.597.1 ID=prot_F-distichus_contig107015.597.1|Name=mRNA_F-distichus_contig107015.597.1|organism=Fucus distichus monoicous|type=polypeptide|length=104bp
MAQLTDATDYDVRRRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTE
GMISASAAQQVGQRVRWEILDKMPFVADVMVNIAVESKPCPAMNSLRPQE
DIEQ
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mRNA from alignment at F-distichus_contig107015:1319..1921-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107015.597.1 ID=mRNA_F-distichus_contig107015.597.1|Name=mRNA_F-distichus_contig107015.597.1|organism=Fucus distichus monoicous|type=mRNA|length=603bp|location=Sequence derived from alignment at F-distichus_contig107015:1319..1921- (Fucus distichus monoicous)
CAGGTCTCCACCGATGCGATGGCGCAGCTAACGGACGCAACAGACTACGA CGTCCGCCGCAGGGTGGCGGAGATGGCGACCAAGGTTCCCGGGGTGCTGT CTTTTGACCGCGTCCGCGCGCGTCGGATGGGGCCTCAGACTCTGGTGGAC CTTACCATTCAGACCGAAGGCATGATCTCAGCCTCTGCGGCGCAGCAGGT GCGGTGCGGAGCCACGCACTCTGTGGGAGTTCCGATGTCGAGAAGAGAGG TGTTCCTTCCGGGGTGTTATGAGTATATGGCGGCGTTCGCGAAACGCGCG AGCTGGTGAGCGGGAGGGGAGAAGAGGGGAGAAGAGGGGAGGGGAGGGGA GGGGAAGAACGCGGGAGTGGAGCGATCTGATTAGTTGAAACAATGTCTCT ACTCTCTAATGATCGTTCTTACCGGGCATGTTCTCCACATGAACAACGGA TAATTGAATAAACAAAACAAGGTGGGTCAGCGCGTGAGGTGGGAAATCTT GGACAAGATGCCCTTCGTGGCGGACGTAATGGTGAACATCGCCGTGGAGT CCAAGCCGTGCCCAGCCATGAACAGTCTTCGGCCTCAAGAAGACATCGAG CAG
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Coding sequence (CDS) from alignment at F-distichus_contig107015:1319..1921-

>mRNA_F-distichus_contig107015.597.1 ID=mRNA_F-distichus_contig107015.597.1|Name=mRNA_F-distichus_contig107015.597.1|organism=Fucus distichus monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at F-distichus_contig107015:1319..1921- (Fucus distichus monoicous)
ATGGCGCAGCTAACGGACGCAACAGACTACGACGTCCGCCGCAGGGTGGC
GGAGATGGCGACCAAGGTTCCCGGGGTGCTGTCTTTTGACCGCGTCCGCG
CGCGTCGGATGGGGCCTCAGACTCTGGTGGACCTTACCATTCAGACCGAA
GGCATGATCTCAGCCTCTGCGGCGCAGCAGATGGCGCAGCTAACGGACGC
AACAGACTACGACGTCCGCCGCAGGGTGGCGGAGATGGCGACCAAGGTTC
CCGGGGTGCTGTCTTTTGACCGCGTCCGCGCGCGTCGGATGGGGCCTCAG
ACTCTGGTGGACCTTACCATTCAGACCGAAGGCATGATCTCAGCCTCTGC
GGCGCAGCAGGTGGGTCAGCGCGTGAGGTGGGAAATCTTGGACAAGATGC
CCTTCGTGGCGGACGTAATGGTGAACATCGCCGTGGAGTCCAAGCCGTGC
CCAGCCATGAACAGTCTTCGGCCTCAAGAAGACATCGAGCAGGTGGGTCA
GCGCGTGAGGTGGGAAATCTTGGACAAGATGCCCTTCGTGGCGGACGTAA
TGGTGAACATCGCCGTGGAGTCCAAGCCGTGCCCAGCCATGAACAGTCTT
CGGCCTCAAGAAGACATCGAGCAG
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