mRNA_F-distichus_contig10701.596.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10701.596.1
Unique NamemRNA_F-distichus_contig10701.596.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10701.596.1 vs. uniprot
Match: D8LDJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ8_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 4.410e-74
Identity = 153/347 (44.09%), Postives = 190/347 (54.76%), Query Frame = 1 
Query:    4 IRKLSSDDKAKLKTNSIENDSVGWIRKSLFKKAMEWPRELYLNVLGCKALLPPARGSGRKTLTETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDQSTEQVPEEESDGVE-------LRVRSE---ESGGSYDSSLDSADGAGGLEE---------GNGDAGGM-----ECFVLVRNATTGRDLKTQGIRGGANPVFRESLVVPCQGPRDAIVLGVYYKMAGDHPALLGETALPLDTRVIGASHPVVLSVKDANGHNRGFLRVETFWMDEAKPRKERGEFYYRVVHRSGVRLRNHPSMSAEKALHVMEYGEVFLASERQW 972
            +R++S DDKAKLK  SIENDS GW++K LFKK + WPRELYLNVLGCKAL+P +       LT TA                                                         + +                  L   SE   ESG    SS+   DGA  +E+          N + G +     ECFV +RNATTGRDL+T+ + GGAN  F E+ VVPCQGPRDA+VL V++   G+    +G+ ALPLD RV+G SHPV+LSVKD  G NRGFLRVETFW+DEAKPRKE GEFYY+VVH  GV LRN P   +++++HV+  GEVF+A ERQW
Sbjct:    2 VRRISMDDKAKLKAFSIENDSAGWLKKKLFKKEVTWPRELYLNVLGCKALVPQSAVGEGGPLTATASVTTDGENGDAAGTAAAGVILAGVGGDIDARVNPERATPPPGGALGAAGGVVVATPGTADGTVXXXXXXXXXXXXXXGLDTESEGGIESGDEATSSV--GDGAEPVEDVNELMSALSSNMEGGEVKEVKGECFVRIRNATTGRDLQTETVSGGANIGFHETFVVPCQGPRDAVVLEVFFG-EGEKAVAIGDAALPLDARVVGVSHPVLLSVKDKQGRNRGFLRVETFWLDEAKPRKEVGEFYYKVVHPCGVHLRNQPCTGSDRSVHVLGCGEVFVACERQW 345
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BLAST of mRNA_F-distichus_contig10701.596.1 vs. uniprot
Match: A0A6H5LA98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA98_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 6.630e-64
Identity = 146/356 (41.01%), Postives = 179/356 (50.28%), Query Frame = 1 
Query:   22 DDKAKLKTNSIENDSVGWIRKSLFKKAMEWPRELYLNVLGCKALLPPARGSGRKTLTETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDQSTEQVPEEESDGVELRVRSEESGGSYDSSLDSA----DGAGGLEEGN-------GDAGGME-------CFVLVRNATTGRDL-----KTQGIRGGANPVFRESLVVPCQGPRDAIVLGVYYKMAGDHPALLGETA----------------LPLDTRVIGASHPVVLSVKDANGHNRGFLRVETFWMDEAKPRKERGEFYYRVVHRSGVRLRNHPSMSAEKALHVMEYGEVFLASERQW 972
            DDKAKLK  SIENDS GW++K LFKK + WPRELYLNVLGCKAL+P +       LT TA                                                       D +  +                +S G  +S  ++     DGA  +E+ N        +  G E       CFV VRNATTGRDL     KT+ + GGAN  F E+ VVPCQGPRDA+VL V++   G+    +G                      D RV+G SHPV+LSVKD  G NRGFLRVETFW+DEAKPRKE GEFYY+VVH  GV LRN P   +++++HV+E GEVF+A ERQW
Sbjct:    2 DDKAKLKAFSIENDSAGWLKKKLFKKEVTWPRELYLNVLGCKALVPQSAVGEDGPLTATASVTTDGENGDVAGTAAGAGVVLSGVGGDMDAKANPEPATPPPAGEVVVASPGT-ADGTVNRXXXXXXXXXXXXXXDTDSEGGMESGDEATSTLGDGAEPVEDVNELMSAVSSNVEGAEVKDVKGVCFVRVRNATTGRDLQRHVLKTETVSGGANIEFHETFVVPCQGPRDAVVLEVFFG-EGEKAVAIGMRGQSSNDYGMHDXXXXXXXXXDARVVGVSHPVLLSVKDKQGRNRGFLRVETFWLDEAKPRKEVGEFYYKVVHPCGVHLRNQPCTGSDRSVHVLECGEVFVACERQW 355
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10701.596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDJ8_ECTSI4.410e-7444.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LA98_9PHAE6.630e-6441.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10701contigF-distichus_contig10701:358..3847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_000290.1
Exons5
Model size972
Cds size972
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10701.596.1prot_F-distichus_contig10701.596.1Fucus distichus monoicouspolypeptideF-distichus_contig10701 358..3847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.6669343-CDS-F-distichus_contig10701:357..4681622928997.6669343-CDS-F-distichus_contig10701:357..468Fucus distichus monoicousCDSF-distichus_contig10701 358..468 -
1690885099.151822-CDS-F-distichus_contig10701:357..4681690885099.151822-CDS-F-distichus_contig10701:357..468Fucus distichus monoicousCDSF-distichus_contig10701 358..468 -
1622928997.7196572-CDS-F-distichus_contig10701:969..11331622928997.7196572-CDS-F-distichus_contig10701:969..1133Fucus distichus monoicousCDSF-distichus_contig10701 970..1133 -
1690885099.1692328-CDS-F-distichus_contig10701:969..11331690885099.1692328-CDS-F-distichus_contig10701:969..1133Fucus distichus monoicousCDSF-distichus_contig10701 970..1133 -
1622928997.7385705-CDS-F-distichus_contig10701:1836..19661622928997.7385705-CDS-F-distichus_contig10701:1836..1966Fucus distichus monoicousCDSF-distichus_contig10701 1837..1966 -
1690885099.1789258-CDS-F-distichus_contig10701:1836..19661690885099.1789258-CDS-F-distichus_contig10701:1836..1966Fucus distichus monoicousCDSF-distichus_contig10701 1837..1966 -
1622928997.7595837-CDS-F-distichus_contig10701:2827..32911622928997.7595837-CDS-F-distichus_contig10701:2827..3291Fucus distichus monoicousCDSF-distichus_contig10701 2828..3291 -
1690885099.1874595-CDS-F-distichus_contig10701:2827..32911690885099.1874595-CDS-F-distichus_contig10701:2827..3291Fucus distichus monoicousCDSF-distichus_contig10701 2828..3291 -
1622928997.775999-CDS-F-distichus_contig10701:3744..38471622928997.775999-CDS-F-distichus_contig10701:3744..3847Fucus distichus monoicousCDSF-distichus_contig10701 3745..3847 -
1690885099.196018-CDS-F-distichus_contig10701:3744..38471690885099.196018-CDS-F-distichus_contig10701:3744..3847Fucus distichus monoicousCDSF-distichus_contig10701 3745..3847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10701.596.1

>prot_F-distichus_contig10701.596.1 ID=prot_F-distichus_contig10701.596.1|Name=mRNA_F-distichus_contig10701.596.1|organism=Fucus distichus monoicous|type=polypeptide|length=324bp
QIRKLSSDDKAKLKTNSIENDSVGWIRKSLFKKAMEWPRELYLNVLGCKA
LLPPARGSGRKTLTETATASVTTDEGDNGSGGACTAPPYPPAAAAAAPGE
SSGIGADADVGADSDAAAAVAVDQSTEQVPEEESDGVELRVRSEESGGSY
DSSLDSADGAGGLEEGNGDAGGMECFVLVRNATTGRDLKTQGIRGGANPV
FRESLVVPCQGPRDAIVLGVYYKMAGDHPALLGETALPLDTRVIGASHPV
VLSVKDANGHNRGFLRVETFWMDEAKPRKERGEFYYRVVHRSGVRLRNHP
SMSAEKALHVMEYGEVFLASERQW
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mRNA from alignment at F-distichus_contig10701:358..3847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10701.596.1 ID=mRNA_F-distichus_contig10701.596.1|Name=mRNA_F-distichus_contig10701.596.1|organism=Fucus distichus monoicous|type=mRNA|length=3490bp|location=Sequence derived from alignment at F-distichus_contig10701:358..3847- (Fucus distichus monoicous)
CAGATCCGGAAGCTATCGTCGGACGACAAGGCAAAGCTGAAGACCAACTC
CATCGAGAACGACAGTGTCGGCTGGATCCGGAAGAGCTTGTTCAAGAAGG
CAAGTCGAGAACTCAATTCCGCAAGTAGTGCGGCTTTCCGCTACCACACA
ACAGCTCCGAAAGTCGATTGGACTAATGAACTGCAGCGTTAACCGATTCA
GCACGGTAGGCCATTCTGGCCTCAGGTCGTATCTCGTAGACCTCTCTAAA
GTTGGAGCGTTTGTCGTTTGTATTCTCAACGAAAAAGGAACAAGTGGGTA
TCGGCGACGCGGGGATCTAGAGGGGGGAGGGGTTTATTTTCCTAAGTGAG
GCTTTATTATAGGACCCTCTCCCTTTCTCCCTCCCCCCCACCCCCTGCCC
TGCGCTTTGTGAAGTACTAGCACACGATCTGCCTGCCTCAGCAAACCTGT
TGGTTTCTGTTACGCCAGACAAATATATACCGCATGTCTCGAGCCGAGCT
TTGGCTTTATTCATGCAGTGTACTGTTGCCTCGTGTGTCTCCCCACGAGC
AGGAAGTGGAATGGCCCCGCGAGCTTTATCTTAACGTCCTCGGGTGTAAG
GCTCTTCTGCCGCCTGCCCGGGGGAGTGGCCGAAAAACCCTGACCGAAAC
CGCCACGGCAAGCGTTACTACCGACGAAGGAGACAACGGCAGCGGCGGTG
CTTGCACAGCTCCTCCTTATCCTCCCGCTGCTGCTGCTGCTGCTCCTGGG
GAAAGCAGTGGGATCGGAGCAGATGCTGATGTCGGCGCGGACAGTGACGC
TGCAGCCGCCGTTGCCGTCGACCAATCAACCGAGCAGGTGCCGGAGGAGG
AATCGGATGGGGTGGAGCTCAGAGTAAGAAGCGAAGAGTCTGGGGGAAGC
TACGATTCGTCGCTCGACAGCGCCGACGGGGCTGGGGGTCTCGAGGAGGG
TAACGGCGATGCGGGCGGTATGGAATGCTTCGTGCTGGTTCGGAATGCCA
CTACTGGGCGCGACCTCAAGGTGACATGGAGGTTCGCGGGATGGCGTAGC
TGTTTGCCTTCCTCTGGGGTTGACTTTAGAAAATGGTCAATGGGTGGTGC
CCCACAATTGGTCGGAACTCAAAAGAATGCCAACAGATTGGTATAGTTGG
GAATCTGATTGGTTAAGATTTGATCTGTCGGAGATTGATGGTTGAAGCCG
AACCATTGACCGACTGTATTGTTCTTTACCTTTCACTTGTGGTGGTGGTA
TTGGGAGCTTTTCTTTGGCTGCCCTCGCTCTCGAGTACGGACTTTGTCGG
TAGGGTTCTTTGATGGGGATTGCGCGGCGAGAACACGAGACGGCTCGAGG
CAAGGGTGCGGTGCAAAATTTATCGGCGGTGGGCTTTACGGGTCTCACCT
ACTTGCCTTGTTCGGCGTAACCGCACAGAGAAGAGGCCAGGCTCACAGGA
TCGCAAAGCGCGTGGATATTGGATAGTTAACGGCGTGTTCTCGTGTTGAC
TGAAAAGTATTTAGCAAGATTATCGGCTGTTTTTTAAAATTATCTCGGAA
GTTATCATTAAAAAAATCAGTGTTGCAAAAAACAGCACTTGCTTTCGGAG
AGTGTTATATTTGTAATTTATCTGTACCAATGATTCAGGAAAAGTATTTA
CTGTAGCGTATGCTCAAATATACGAGAGTCTTAGATCATTTGTTTTTGTT
GTTTTCGTCTGGTTTGGTTTGGATTCTGTTTTCCCGTAGACATTAAAGGC
GGTAAAAAACCCTGCTGTTGCGCCAAGGGAGAATTGAAACGCTTCCCCCC
TCCCTTCCCGTCTCCGCCTTGAATATGACTCACACCTACTGCCCCGTGGA
TCGTTCTCGGGAACGGTTCCACTCTTCACAGACGCAGGGCATCAGGGGAG
GCGCTAACCCGGTTTTCCGCGAGAGCTTGGTGGTGCCTTGTCAAGGCCCT
AGAGACGCGATCGTCTTGGGGGTCTACTACAAGATGGCCGGTGACCATCC
CGCCTTGCTCGGTGAGCCGACTTGCTTGGCTTAACTTCGCTGCTTTTATC
AATAGCTTTTAGACACGGGGTGGTGGTGGTTTAAGCGTTCCAAGGTACAC
AGTATACTCCATCGCTCACGAATCGGGATGTATCCGCTGGTTGGTGTAAC
TGTGAAGGTATCGGTGCCGGTTCGGACGATTTTTCTTAACAAAATCTTGC
AGGCGAAGGAACCTTGCGAAACATTATTTGTAGCATTCAGGTGGGTATTG
TATTACCTGTCATTCGTATTATCTGGTACAGCACAAAAGCATTGCGTTGC
ATCTTAATTGCTACAGTGCCAGTGGAAAGGTTGGGGGCTCAATCAGCGAA
TACCACGAACATGTAGACAATCACCCCGGGCTTGTTTCGCATTGGCCTCG
GCCTCTTCGATGAAACCCAGCCATGTCCCGACCGCAGCCGAGAAAGAAAC
CACCGGATGTATATGTATATCGAATGGATTTTTCTAGGGTCATTTTTCGT
ATTGTTTTTGGAACTGTCGTAGTAACCACGAGCGATCAAGGCGGCCTTCG
CGGGGGGGACATGGTCAGGATTCAAGAACATCTCTGTAGACCGAAATCGT
GGATAAAACAAACCGCGGGCATTAAGAAAATGCATTTTTTTGTAACCCCT
GTCCCCTGTTCCCCACTCAACCACGTGTTTTTATTTATTTTTATATAATA
CCTGACCCGAACAGGCGAGACCGCTCTTCCGTTGGACACGCGCGTGATTG
GCGCTTCTCATCCCGTGGTGCTCTCGGTCAAGGACGCCAATGGTCACAAC
AGAGGTTTCCTAAGGGTGGAAACGTTTTGGATGGACGAGGCTAAGCCCCG
GAAGGAAAGGGGGGAGTTCTATTATCGTGTGAGGCTCGGTCGTCGAGGAC
ACTGTGTGGTTGTTTTTTCTGTCCACGTACTTGGATCACGCGGACTGAAT
CGAAAGGGATGTGTACGCTGCGGGTAGTCTTGATTGTGCTGCACGTTTCT
TGGGACGGAAGCATCGGGCACTTTGCCGCTTGGACTATTCTCTATATTAT
TCGGAATACATTACGGTTGATGTTTCGGCTTGGACGTCGTAAGATTTTCC
GCGCCATGGGCACACAGATCTATTCTCCTGGTGCTTGTTGTGCACCCTAA
AACATTAAGTAAGGAGCTTGTATACCTCTGCACGCGGGGTTAGTTCCCGC
TCCAAACCAGTGGGGTTTTGGTATGAACGCAACATGTCATCCGAGGAAAC
ACAACGCCGATGGATGCTTTCACCCCGTATGATATCTACCAGGAAGAAGG
CGTGAGGTAGGCGTGTTGGTTGATCCCTGCCCCGAACGACTTTTTTTGGT
GTTGTGTGTCTGCTGTCCGCTTGTCCAAGGTCGTTCACCGGAGCGGCGTA
AGATTGCGAAACCACCCGTCGATGTCGGCTGAAAAGGCCCTTCACGTAAT
GGAATACGGGGAAGTATTCCTGGCGAGCGAGCGACAATGG
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Coding sequence (CDS) from alignment at F-distichus_contig10701:358..3847-

>mRNA_F-distichus_contig10701.596.1 ID=mRNA_F-distichus_contig10701.596.1|Name=mRNA_F-distichus_contig10701.596.1|organism=Fucus distichus monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at F-distichus_contig10701:358..3847- (Fucus distichus monoicous)
CAGATCCGGAAGCTATCGTCGGACGACAAGGCAAAGCTGAAGACCAACTC
CATCGAGAACGACAGTGTCGGCTGGATCCGGAAGAGCTTGTTCAAGAAGG
CAACAGATCCGGAAGCTATCGTCGGACGACAAGGCAAAGCTGAAGACCAA
CTCCATCGAGAACGACAGTGTCGGCTGGATCCGGAAGAGCTTGTTCAAGA
AGGCAATGGAATGGCCCCGCGAGCTTTATCTTAACGTCCTCGGGTGTAAG
GCTCTTCTGCCGCCTGCCCGGGGGAGTGGCCGAAAAACCCTGACCGAAAC
CGCCACGGCAAGCGTTACTACCGACGAAGGAGACAACGGCAGCGGCGGTG
CTTGCACAGCTCCTCCTTATCCTCCCGCTGCTGCTGCTGCTGCTCCTGGG
GAAAGCAGTGGGATCGGAGCAGATGCTGATGTCGGCGCGGACAGTGACGC
TGCAGCCGCCGTTGCCGTCGACCAATCAACCGAGCAGGTGCCGGAGGAGG
AATCGGATGGGGTGGAGCTCAGAGTAAGAAGCGAAGAGTCTGGGGGAAGC
TACGATTCGTCGCTCGACAGCGCCGACGGGGCTGGGGGTCTCGAGGAGGG
TAACGGCGATGCGGGCGGTATGGAATGCTTCGTGCTGGTTCGGAATGCCA
CTACTGGGCGCGACCTCAAGTGGAATGGCCCCGCGAGCTTTATCTTAACG
TCCTCGGGTGTAAGGCTCTTCTGCCGCCTGCCCGGGGGAGTGGCCGAAAA
ACCCTGACCGAAACCGCCACGGCAAGCGTTACTACCGACGAAGGAGACAA
CGGCAGCGGCGGTGCTTGCACAGCTCCTCCTTATCCTCCCGCTGCTGCTG
CTGCTGCTCCTGGGGAAAGCAGTGGGATCGGAGCAGATGCTGATGTCGGC
GCGGACAGTGACGCTGCAGCCGCCGTTGCCGTCGACCAATCAACCGAGCA
GGTGCCGGAGGAGGAATCGGATGGGGTGGAGCTCAGAGTAAGAAGCGAAG
AGTCTGGGGGAAGCTACGATTCGTCGCTCGACAGCGCCGACGGGGCTGGG
GGTCTCGAGGAGGGTAACGGCGATGCGGGCGGTATGGAATGCTTCGTGCT
GGTTCGGAATGCCACTACTGGGCGCGACCTCAAGACGCAGGGCATCAGGG
GAGGCGCTAACCCGGTTTTCCGCGAGAGCTTGGTGGTGCCTTGTCAAGGC
CCTAGAGACGCGATCGTCTTGGGGGTCTACTACAAGATGGCCGGTGACCA
TCCCGCCTTGCTCGACGCAGGGCATCAGGGGAGGCGCTAACCCGGTTTTC
CGCGAGAGCTTGGTGGTGCCTTGTCAAGGCCCTAGAGACGCGATCGTCTT
GGGGGTCTACTACAAGATGGCCGGTGACCATCCCGCCTTGCTCGGCGAGA
CCGCTCTTCCGTTGGACACGCGCGTGATTGGCGCTTCTCATCCCGTGGTG
CTCTCGGTCAAGGACGCCAATGGTCACAACAGAGGTTTCCTAAGGGTGGA
AACGTTTTGGATGGACGAGGCTAAGCCCCGGAAGGAAAGGGGGGAGTTCT
ATTATCGTGCGAGACCGCTCTTCCGTTGGACACGCGCGTGATTGGCGCTT
CTCATCCCGTGGTGCTCTCGGTCAAGGACGCCAATGGTCACAACAGAGGT
TTCCTAAGGGTGGAAACGTTTTGGATGGACGAGGCTAAGCCCCGGAAGGA
AAGGGGGGAGTTCTATTATCGTGTCGTTCACCGGAGCGGCGTAAGATTGC
GAAACCACCCGTCGATGTCGGCTGAAAAGGCCCTTCACGTAATGGAATAC
GGGGAAGTATTCCTGGCGAGCGAGCGACAATGGGTCGTTCACCGGAGCGG
CGTAAGATTGCGAAACCACCCGTCGATGTCGGCTGAAAAGGCCCTTCACG
TAATGGAATACGGGGAAGTATTCCTGGCGAGCGAGCGACAATGG
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