mRNA_F-distichus_contig107001.595.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107001.595.1
Unique NamemRNA_F-distichus_contig107001.595.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig107001.595.1 vs. uniprot
Match: UPI0010307233 (GIY-YIG nuclease family protein n=1 Tax=Rhizobium leguminosarum TaxID=384 RepID=UPI0010307233)

HSP 1 Score: 55.5 bits (132), Expect = 7.650e-7
Identity = 37/90 (41.11%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:    1 IYAIVNLKNGRAYVGRTIRSPFLRFQEHVMHDT----SYFGRALRHNP-NGFVVLLLEKVPDGTGLQEYRERESSWISRLDTLH-SGYNK 252
            IY I +   G+ YVG T+  P +RF +H +       S    A+R N    F + LLE V  G GL    ERES WI+ L+TLH  G NK
Sbjct:  213 IYRITDGSTGKCYVGLTVNKPEMRFGQHKIFANKGRGSLLHEAMRKNGFENFSIDLLEVVEGGEGL--LAERESHWITLLETLHPKGLNK 300
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107001.595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00103072337.650e-741.11GIY-YIG nuclease family protein n=1 Tax=Rhizobium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107001contigF-distichus_contig107001:1229..1513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.5903614-CDS-F-distichus_contig107001:1228..15131622928997.5903614-CDS-F-distichus_contig107001:1228..1513Fucus distichus monoicousCDSF-distichus_contig107001 1229..1513 +
1690885099.1414924-CDS-F-distichus_contig107001:1228..15131690885099.1414924-CDS-F-distichus_contig107001:1228..1513Fucus distichus monoicousCDSF-distichus_contig107001 1229..1513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107001.595.1prot_F-distichus_contig107001.595.1Fucus distichus monoicouspolypeptideF-distichus_contig107001 1229..1513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107001.595.1

>prot_F-distichus_contig107001.595.1 ID=prot_F-distichus_contig107001.595.1|Name=mRNA_F-distichus_contig107001.595.1|organism=Fucus distichus monoicous|type=polypeptide|length=95bp
IYAIVNLKNGRAYVGRTIRSPFLRFQEHVMHDTSYFGRALRHNPNGFVVL
LLEKVPDGTGLQEYRERESSWISRLDTLHSGYNKRREIAKPAAPL
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mRNA from alignment at F-distichus_contig107001:1229..1513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107001.595.1 ID=mRNA_F-distichus_contig107001.595.1|Name=mRNA_F-distichus_contig107001.595.1|organism=Fucus distichus monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at F-distichus_contig107001:1229..1513+ (Fucus distichus monoicous)
ATATATGCCATAGTTAACCTAAAAAATGGTAGAGCATATGTTGGACGTAC
TATACGTAGCCCCTTCTTACGATTCCAGGAACATGTCATGCATGATACTA
GCTATTTTGGACGGGCCCTTAGACACAACCCTAATGGATTTGTAGTCCTT
CTACTTGAAAAAGTCCCTGATGGCACGGGTTTACAAGAGTATAGAGAACG
GGAATCATCATGGATCTCCCGATTAGATACCTTACACTCAGGGTACAATA
AACGTAGAGAAATAGCTAAACCAGCTGCGCCACTA
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Coding sequence (CDS) from alignment at F-distichus_contig107001:1229..1513+

>mRNA_F-distichus_contig107001.595.1 ID=mRNA_F-distichus_contig107001.595.1|Name=mRNA_F-distichus_contig107001.595.1|organism=Fucus distichus monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at F-distichus_contig107001:1229..1513+ (Fucus distichus monoicous)
ATATATGCCATAGTTAACCTAAAAAATGGTAGAGCATATGTTGGACGTAC
TATACGTAGCCCCTTCTTACGATTCCAGGAACATGTCATGCATGATACTA
GCTATTTTGGACGGGCCCTTAGACACAACCCTAATGGATTTGTAGTCCTT
CTACTTGAAAAAGTCCCTGATGGCACGGGTTTACAAGAGTATAGAGAACG
GGAATCATCATGGATCTCCCGATTAGATACCTTACACTCAGGGTACAATA
AACGTAGAGAAATAGCTAAACCAGCTGCGCCACTAATATATGCCATAGTT
AACCTAAAAAATGGTAGAGCATATGTTGGACGTACTATACGTAGCCCCTT
CTTACGATTCCAGGAACATGTCATGCATGATACTAGCTATTTTGGACGGG
CCCTTAGACACAACCCTAATGGATTTGTAGTCCTTCTACTTGAAAAAGTC
CCTGATGGCACGGGTTTACAAGAGTATAGAGAACGGGAATCATCATGGAT
CTCCCGATTAGATACCTTACACTCAGGGTACAATAAACGTAGAGAAATAG
CTAAACCAGCTGCGCCACTA
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