mRNA_F-distichus_contig106953.589.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106953.589.1
Unique NamemRNA_F-distichus_contig106953.589.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig106953.589.1 vs. uniprot
Match: D7FU20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU20_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 5.920e-23
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 VCQDIVRASSRTSSGGDTYAVVAELLSRPTEGDILTPSGVESAPIGISVDGVEGEVVITVENRLV 195
            VC DI+RASSRTSSGGD YAV+A LLSRP EGD+LTPSG  S+PIGISV   +GEVVITVENR V
Sbjct:  106 VCHDIMRASSRTSSGGDAYAVMAALLSRPAEGDLLTPSGSGSSPIGISVASADGEVVITVENRFV 170
[Close]
BLAST of mRNA_F-distichus_contig106953.589.1 vs. uniprot
Match: A0A6H5KR82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR82_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.200e-22
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 VCQDIVRASSRTSSGGDTYAVVAELLSRPTEGDILTPSGVESAPIGISVDGVEGEVVITVENRLV 195
            VC DI+RASSRTSSGGD YAV+A LLSRP +GD+LTPSG  S+PIGIS+ G +GEVVITVEN  V
Sbjct: 1250 VCHDIIRASSRTSSGGDAYAVMAALLSRPAKGDLLTPSGSGSSPIGISIAGADGEVVITVENSFV 1314
[Close]
BLAST of mRNA_F-distichus_contig106953.589.1 vs. uniprot
Match: W7TIK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIK0_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.430e-9
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 VCQDIVRASSRTSSGGDTYAVVAELLSRPTEGDILTPS-GVESAPIGISVDGVEGEVVITVENRLVKGFCILE 216
            +CQDI+RASSRT+SGGD+Y +   LL RP  G++LTP+    S PI I +   EG V I   N  V  + +LE
Sbjct:   18 LCQDILRASSRTASGGDSYVITTSLLVRP--GNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLE 88
[Close]
BLAST of mRNA_F-distichus_contig106953.589.1 vs. uniprot
Match: K8YUK8_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUK8_NANGC)

HSP 1 Score: 61.6 bits (148), Expect = 2.000e-9
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 VCQDIVRASSRTSSGGDTYAVVAELLSRPTEGDILTPS-GVESAPIGISVDGVEGEVVITVENRLVKGFCILE 216
            +CQDI+RASSRT+SGGD+Y +   LL RP  G++LTP+    S PI I +   EG V I   N  V  + +LE
Sbjct:   54 LCQDILRASSRTASGGDSYVITTSLLVRP--GNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLE 124
[Close]
BLAST of mRNA_F-distichus_contig106953.589.1 vs. uniprot
Match: A0A4D9DEA1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEA1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.200e-9
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 VCQDIVRASSRTSSGGDTYAVVAELLSRPTEGDILTPS-GVESAPIGISVDGVEGEVVITVENRLVKGFCILE 216
            +CQDI+RASSRT+SGGD+Y +   LL RP  G++LTP+    S PI I +   EG V I   N  V  + +LE
Sbjct:  721 LCQDILRASSRTASGGDSYVITTSLLVRP--GNLLTPATAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLE 791
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106953.589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FU20_ECTSI5.920e-2376.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR82_9PHAE2.200e-2273.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TIK0_9STRA1.430e-947.95Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
K8YUK8_NANGC2.000e-947.95Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A4D9DEA1_9STRA2.200e-947.95Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106953contigF-distichus_contig106953:163..378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.6507607-CDS-F-distichus_contig106953:162..3781622928996.6507607-CDS-F-distichus_contig106953:162..378Fucus distichus monoicousCDSF-distichus_contig106953 163..378 +
1690885098.499507-CDS-F-distichus_contig106953:162..3781690885098.499507-CDS-F-distichus_contig106953:162..378Fucus distichus monoicousCDSF-distichus_contig106953 163..378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106953.589.1prot_F-distichus_contig106953.589.1Fucus distichus monoicouspolypeptideF-distichus_contig106953 163..378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106953.589.1

>prot_F-distichus_contig106953.589.1 ID=prot_F-distichus_contig106953.589.1|Name=mRNA_F-distichus_contig106953.589.1|organism=Fucus distichus monoicous|type=polypeptide|length=72bp
VCQDIVRASSRTSSGGDTYAVVAELLSRPTEGDILTPSGVESAPIGISVD
GVEGEVVITVENRLVKGFCILE
back to top

mRNA from alignment at F-distichus_contig106953:163..378+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106953.589.1 ID=mRNA_F-distichus_contig106953.589.1|Name=mRNA_F-distichus_contig106953.589.1|organism=Fucus distichus monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at F-distichus_contig106953:163..378+ (Fucus distichus monoicous)
GTCTGCCAAGACATCGTACGCGCGTCCAGCAGGACCTCTTCGGGGGGCGA
CACCTACGCGGTGGTGGCCGAGCTTCTTTCTCGGCCTACGGAGGGCGATA
TCCTGACGCCGTCAGGGGTGGAATCGGCGCCGATCGGGATCTCGGTAGAC
GGCGTGGAAGGGGAAGTGGTGATTACCGTTGAGAACAGGTTGGTGAAAGG
GTTTTGTATTTTAGAG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig106953:163..378+

>mRNA_F-distichus_contig106953.589.1 ID=mRNA_F-distichus_contig106953.589.1|Name=mRNA_F-distichus_contig106953.589.1|organism=Fucus distichus monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at F-distichus_contig106953:163..378+ (Fucus distichus monoicous)
GTCTGCCAAGACATCGTACGCGCGTCCAGCAGGACCTCTTCGGGGGGCGA
CACCTACGCGGTGGTGGCCGAGCTTCTTTCTCGGCCTACGGAGGGCGATA
TCCTGACGCCGTCAGGGGTGGAATCGGCGCCGATCGGGATCTCGGTAGAC
GGCGTGGAAGGGGAAGTGGTGATTACCGTTGAGAACAGGTTGGTGAAAGG
GTTTTGTATTTTAGAGGTCTGCCAAGACATCGTACGCGCGTCCAGCAGGA
CCTCTTCGGGGGGCGACACCTACGCGGTGGTGGCCGAGCTTCTTTCTCGG
CCTACGGAGGGCGATATCCTGACGCCGTCAGGGGTGGAATCGGCGCCGAT
CGGGATCTCGGTAGACGGCGTGGAAGGGGAAGTGGTGATTACCGTTGAGA
ACAGGTTGGTGAAAGGGTTTTGTATTTTAGAG
back to top