mRNA_F-distichus_contig106921.588.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106921.588.1
Unique NamemRNA_F-distichus_contig106921.588.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106921.588.1 vs. uniprot
Match: A0A6H5KU31_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU31_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.590e-53
Identity = 93/101 (92.08%), Postives = 99/101 (98.02%), Query Frame = 1
Query:    7 SVTSMALALQRVFYRLQTSDRSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTQVEGTIQRLFEGSIRSYIKCVDVSFTSSRVETYYDIQV 309
            SVTSMALALQRVFYRLQTS++SVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGT VEGTIQRLFEG+IRSYI+CVDV FTS+RVETYYDIQ+
Sbjct:  454 SVTSMALALQRVFYRLQTSNKSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTPVEGTIQRLFEGTIRSYIQCVDVDFTSARVETYYDIQL 554          
BLAST of mRNA_F-distichus_contig106921.588.1 vs. uniprot
Match: D8LL31_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL31_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 2.160e-53
Identity = 93/101 (92.08%), Postives = 98/101 (97.03%), Query Frame = 1
Query:    7 SVTSMALALQRVFYRLQTSDRSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTQVEGTIQRLFEGSIRSYIKCVDVSFTSSRVETYYDIQV 309
            SVTSMALALQRVFYRLQTS +SVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGT VEGTIQRLFEG+IRSYI+CVDV FTS+RVETYYDIQ+
Sbjct:  410 SVTSMALALQRVFYRLQTSSKSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTPVEGTIQRLFEGTIRSYIQCVDVDFTSARVETYYDIQL 510          
BLAST of mRNA_F-distichus_contig106921.588.1 vs. uniprot
Match: A0A7S2HJH2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HJH2_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.660e-44
Identity = 72/98 (73.47%), Postives = 85/98 (86.73%), Query Frame = 1
Query:   16 SMALALQRVFYRLQTSDRSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTQVEGTIQRLFEGSIRSYIKCVDVSFTSSRVETYYDIQV 309
            SMALALQRVFYRLQTS   VGTKELT++FGW  YDSF QQDVQELNRVLCD LE+KMKGT  EGTI++LFEG+IRS+I+C++V + S R E+YYDIQ+
Sbjct:    4 SMALALQRVFYRLQTSQTEVGTKELTRAFGWGVYDSFMQQDVQELNRVLCDKLEEKMKGTCAEGTIKQLFEGAIRSFIRCLNVDYESKREESYYDIQL 101          
BLAST of mRNA_F-distichus_contig106921.588.1 vs. uniprot
Match: A0A7S2B0F0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B0F0_9STRA)

HSP 1 Score: 149 bits (377), Expect = 8.770e-43
Identity = 73/98 (74.49%), Postives = 84/98 (85.71%), Query Frame = 1
Query:   16 SMALALQRVFYRLQTSDRSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTQVEGTIQRLFEGSIRSYIKCVDVSFTSSRVETYYDIQV 309
            +MALALQRVFYRLQTSD  VGTKELTKSFGW   DSF QQDVQELNRVLCD LE+KMKGT  EGTI++LFEG+IRS+I+C ++ F S R E+YYDIQ+
Sbjct:   58 TMALALQRVFYRLQTSDEEVGTKELTKSFGWATVDSFMQQDVQELNRVLCDKLEEKMKGTCAEGTIKQLFEGTIRSFIRCKNIEFESKREESYYDIQL 155          
BLAST of mRNA_F-distichus_contig106921.588.1 vs. uniprot
Match: A0A151T199_CAJCA (Ubiquitin carboxyl-terminal hydrolase 12 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T199_CAJCA)

HSP 1 Score: 140 bits (352), Expect = 1.300e-40
Identity = 67/98 (68.37%), Postives = 82/98 (83.67%), Query Frame = 1
Query:   16 SMALALQRVFYRLQTSDRSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTQVEGTIQRLFEGSIRSYIKCVDVSFTSSRVETYYDIQV 309
            S+ LALQ +FY+LQ SD SV TKELTKSFGWD YDSF Q DVQELNRVLC+ LEDKMKGT VEGTIQ+LFEG   +YI+C++V + S+R E++YD+Q+
Sbjct:    5 SIPLALQSLFYKLQHSDTSVSTKELTKSFGWDTYDSFLQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQL 102          
BLAST of mRNA_F-distichus_contig106921.588.1 vs. uniprot
Match: A0A1Q3CMN1_CEPFO (UCH domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3CMN1_CEPFO)

HSP 1 Score: 139 bits (350), Expect = 2.960e-40
Identity = 67/98 (68.37%), Postives = 82/98 (83.67%), Query Frame = 1
Query:   16 SMALALQRVFYRLQTSDRSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTQVEGTIQRLFEGSIRSYIKCVDVSFTSSRVETYYDIQV 309
            S+ LALQ +FY+LQ SD SV TKELTKSFGWD YDSF Q DVQELNRVLC+ LEDKMKGT VEGTIQ+LFEG   +YI+C++V + S+R E++YD+Q+
Sbjct:   12 SIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECMNVDYKSTRKESFYDLQL 109          
BLAST of mRNA_F-distichus_contig106921.588.1 vs. uniprot
Match: A0A7S0EDS0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EDS0_9CRYP)

HSP 1 Score: 136 bits (343), Expect = 2.390e-39
Identity = 64/101 (63.37%), Postives = 83/101 (82.18%), Query Frame = 1
Query:    7 SVTSMALALQRVFYRLQTSDRSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTQVEGTIQRLFEGSIRSYIKCVDVSFTSSRVETYYDIQV 309
            S  S+ALALQRVFY LQ S +SVGTK LTKSFGWDA D+FTQ DVQEL+RVLCD+LE+KMKGT V+G + RLF G +++++KC++V F+S R E +YD+ +
Sbjct:    2 SADSVALALQRVFYNLQHSKKSVGTKALTKSFGWDALDAFTQHDVQELDRVLCDNLEEKMKGTIVDGEVPRLFRGKLQNFVKCINVDFSSVREEEFYDLSL 102          
BLAST of mRNA_F-distichus_contig106921.588.1 vs. uniprot
Match: A0A446U031_TRITD (Uncharacterized protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446U031_TRITD)

HSP 1 Score: 138 bits (348), Expect = 1.120e-38
Identity = 66/98 (67.35%), Postives = 82/98 (83.67%), Query Frame = 1
Query:   16 SMALALQRVFYRLQTSDRSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTQVEGTIQRLFEGSIRSYIKCVDVSFTSSRVETYYDIQV 309
            S+ LALQ +FY+LQ SD SV TKELTKSFGWD YDSF Q DVQELNRVLC+ LEDKMKGT VEGTI++LFEG   +YI+C++V + S+R E++YD+Q+
Sbjct:   87 SIPLALQSLFYKLQYSDNSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIEQLFEGHHINYIECINVDYKSNRKESFYDLQL 184          
BLAST of mRNA_F-distichus_contig106921.588.1 vs. uniprot
Match: A0A7S0WAT7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WAT7_9CRYP)

HSP 1 Score: 134 bits (336), Expect = 1.340e-38
Identity = 63/90 (70.00%), Postives = 80/90 (88.89%), Query Frame = 1
Query:   16 SMALALQRVFYRLQTSDRSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTQVEGTIQRLFEGSIRSYIKCVDVSFTSSRV 285
            S+ALALQRVF+RLQ S+ SVGTK+LTKSFGWD+YD+FTQ DVQEL+RVLCD+LE+KMKGT VEG +  LF+G++RSYI+C++V + S RV
Sbjct:   24 SVALALQRVFFRLQHSNTSVGTKQLTKSFGWDSYDAFTQHDVQELDRVLCDNLEEKMKGTPVEGVVPGLFKGTLRSYIRCLNVDYKSERV 113          
BLAST of mRNA_F-distichus_contig106921.588.1 vs. uniprot
Match: A0A0B2QJR3_GLYSO (Ubiquitin carboxyl-terminal hydrolase 13 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A0B2QJR3_GLYSO)

HSP 1 Score: 134 bits (337), Expect = 2.560e-38
Identity = 63/98 (64.29%), Postives = 81/98 (82.65%), Query Frame = 1
Query:   16 SMALALQRVFYRLQTSDRSVGTKELTKSFGWDAYDSFTQQDVQELNRVLCDHLEDKMKGTQVEGTIQRLFEGSIRSYIKCVDVSFTSSRVETYYDIQV 309
            S+ LALQ +FY+LQ SD SV TKE TKSFGWD YDSF Q DVQELNRVLC+ LEDKMKGT VEGTI +LFEG+  +YI+C++V + ++R +++YD+Q+
Sbjct:   12 SIPLALQILFYKLQYSDTSVATKEFTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIHKLFEGNHMNYIECINVDYKTTRKKSFYDLQL 109          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106921.588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU31_9PHAE1.590e-5392.08USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LL31_ECTSI2.160e-5392.08USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2HJH2_9STRA1.660e-4473.47Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2B0F0_9STRA8.770e-4374.49Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A151T199_CAJCA1.300e-4068.37Ubiquitin carboxyl-terminal hydrolase 12 n=2 Tax=C... [more]
A0A1Q3CMN1_CEPFO2.960e-4068.37UCH domain-containing protein n=1 Tax=Cephalotus f... [more]
A0A7S0EDS0_9CRYP2.390e-3963.37Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A446U031_TRITD1.120e-3867.35Uncharacterized protein n=2 Tax=Triticum turgidum ... [more]
A0A7S0WAT7_9CRYP1.340e-3870.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0B2QJR3_GLYSO2.560e-3864.29Ubiquitin carboxyl-terminal hydrolase 13 n=1 Tax=G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106921contigF-distichus_contig106921:363..1194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.1
Seed ortholog evalue1e-45
Seed eggNOG ortholog2880.D8LL31
KEGG koko:K11838
KEGG Pathwayko04068,ko05168,ko05169,ko05203,map04068,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1863@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons2
Model size309
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.5707707-CDS-F-distichus_contig106921:362..4971622928996.5707707-CDS-F-distichus_contig106921:362..497Fucus distichus monoicousCDSF-distichus_contig106921 363..497 +
1690885098.4684372-CDS-F-distichus_contig106921:362..4971690885098.4684372-CDS-F-distichus_contig106921:362..497Fucus distichus monoicousCDSF-distichus_contig106921 363..497 +
1622928996.597406-CDS-F-distichus_contig106921:1020..11941622928996.597406-CDS-F-distichus_contig106921:1020..1194Fucus distichus monoicousCDSF-distichus_contig106921 1021..1194 +
1690885098.4809618-CDS-F-distichus_contig106921:1020..11941690885098.4809618-CDS-F-distichus_contig106921:1020..1194Fucus distichus monoicousCDSF-distichus_contig106921 1021..1194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106921.588.1prot_F-distichus_contig106921.588.1Fucus distichus monoicouspolypeptideF-distichus_contig106921 363..1194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106921.588.1

>prot_F-distichus_contig106921.588.1 ID=prot_F-distichus_contig106921.588.1|Name=mRNA_F-distichus_contig106921.588.1|organism=Fucus distichus monoicous|type=polypeptide|length=103bp
MISVTSMALALQRVFYRLQTSDRSVGTKELTKSFGWDAYDSFTQQDVQEL
NRVLCDHLEDKMKGTQVEGTIQRLFEGSIRSYIKCVDVSFTSSRVETYYD
IQV
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mRNA from alignment at F-distichus_contig106921:363..1194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106921.588.1 ID=mRNA_F-distichus_contig106921.588.1|Name=mRNA_F-distichus_contig106921.588.1|organism=Fucus distichus monoicous|type=mRNA|length=832bp|location=Sequence derived from alignment at F-distichus_contig106921:363..1194+ (Fucus distichus monoicous)
ATGATCAGCGTCACCAGCATGGCGCTGGCCCTACAGAGGGTTTTCTACCG CCTTCAGACTAGCGACAGGAGTGTGGGTACCAAGGAGCTCACTAAGTCCT TCGGTTGGGACGCCTACGACTCCTTCACCCAACAGGTTTTTCTAGCGATC GAACATGTAACAGGCGCGGGGGGGTATAGCACACACGGACAGAGAGGTAG TAGAGAGGCACGTTTTTTTTTATCTTGTTTCGTTTTTTGGTTTTAGTACT GCATGCAACAACGAAAACCTCAAAATAGTACGTGACGTTCGAAAGGTCTC CACTCAACGTTTTCTTTTCTTTTTCTATAAAGTATTCCTCCCGCCCGACA TATGGGGAGCGGAATTTTTTGTCTCTCGGCGGACTGGGGTTTACTTGCTG TGCCGTTTCGCCACGACAAGGGCATTACATAATTGACCTTTTTGGGAATT GTTTCGTTTGGAGGTCGGGCGGGGAGCGGGATGCTATTGAATATACCTTG CCAGGTGGTGTTGGTCTGTTTTTGGAGCATATGTCGTGCCCTTCCCCCCG CTTCCGCTTCATAGCCTCGCCCGCCTCTACCCTCTTCTCTCTCTAGCGTA CGTAACTTAGAACGCTGTATGTTTCACGTGCGTCGTGTTTTGGTATTTCG GGCCGTAGGACGTCCAAGAGCTGAACCGCGTGCTGTGCGATCACCTAGAG GACAAGATGAAGGGCACTCAGGTCGAGGGCACCATACAGCGACTCTTCGA GGGCAGCATCCGGTCGTACATCAAGTGCGTCGACGTGAGCTTCACGTCCT CGAGGGTGGAAACGTACTACGACATTCAGGTA
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Coding sequence (CDS) from alignment at F-distichus_contig106921:363..1194+

>mRNA_F-distichus_contig106921.588.1 ID=mRNA_F-distichus_contig106921.588.1|Name=mRNA_F-distichus_contig106921.588.1|organism=Fucus distichus monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at F-distichus_contig106921:363..1194+ (Fucus distichus monoicous)
ATGATCAGCGTCACCAGCATGGCGCTGGCCCTACAGAGGGTTTTCTACCG
CCTTCAGACTAGCGACAGGAGTGTGGGTACCAAGGAGCTCACTAAGTCCT
TCGGTTGGGACGCCTACGACTCCTTCACCCAACAGATGATCAGCGTCACC
AGCATGGCGCTGGCCCTACAGAGGGTTTTCTACCGCCTTCAGACTAGCGA
CAGGAGTGTGGGTACCAAGGAGCTCACTAAGTCCTTCGGTTGGGACGCCT
ACGACTCCTTCACCCAACAGGACGTCCAAGAGCTGAACCGCGTGCTGTGC
GATCACCTAGAGGACAAGATGAAGGGCACTCAGGTCGAGGGCACCATACA
GCGACTCTTCGAGGGCAGCATCCGGTCGTACATCAAGTGCGTCGACGTGA
GCTTCACGTCCTCGAGGGTGGAAACGTACTACGACATTCAGGTAGACGTC
CAAGAGCTGAACCGCGTGCTGTGCGATCACCTAGAGGACAAGATGAAGGG
CACTCAGGTCGAGGGCACCATACAGCGACTCTTCGAGGGCAGCATCCGGT
CGTACATCAAGTGCGTCGACGTGAGCTTCACGTCCTCGAGGGTGGAAACG
TACTACGACATTCAGGTA
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