mRNA_F-distichus_contig10689.587.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10689.587.1
Unique NamemRNA_F-distichus_contig10689.587.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10689.587.1 vs. uniprot
Match: D7G7C7_ECTSI (Putative Ntdin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C7_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 6.730e-19
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 IKVRANQEFEHGRPADSVNIPAFFSTAQGMMVNPDFVKQAKFMAHGPSRWLVLGCQMGARSAKVS 195
            + VRA+ EFEHGRPA +VN+PAFFSTAQGM VNPDFV Q        +  LV+GCQMG+RSA+ +
Sbjct:   22 VDVRADYEFEHGRPAGAVNVPAFFSTAQGMTVNPDFVDQIAEKFPDKAAKLVIGCQMGSRSAQAA 86
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BLAST of mRNA_F-distichus_contig10689.587.1 vs. uniprot
Match: A0A6H5K3G8_9PHAE (Rhodanese domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.350e-17
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 IKVRANQEFEHGRPADSVNIPAFFSTAQGMMVNPDFVKQAKFMAHGPSRWLVLGCQMGARSAKVS 195
            + VRA+ EFEHG PA +VN+PAFFSTAQGM VNPDFV Q        +  LV+GCQMG+RSA+ +
Sbjct:   73 VDVRADYEFEHGHPAGAVNVPAFFSTAQGMTVNPDFVDQIAEKFPDKAAKLVIGCQMGSRSAQAA 137
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BLAST of mRNA_F-distichus_contig10689.587.1 vs. uniprot
Match: A0A6L8GEC9_9BACT (Rhodanese-like domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8GEC9_9BACT)

HSP 1 Score: 47.4 bits (111), Expect = 8.330e-5
Identity = 24/67 (35.82%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    1 IKVRANQEFEHGRPADSVNIPAFF--STAQGMMVNPDFVKQAKFMAHGPSRWLVLGCQMGARSAKVS 195
            + VR+  E++ G PA + N+P        + M+ NPDFV   +   + P   L++GCQMG RSA+ +
Sbjct:   23 VDVRSTPEYDQGHPAGAHNVPLLHLDPATRQMLPNPDFVSVMQ-ACYAPDAKLLIGCQMGGRSARAA 88
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10689.587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7C7_ECTSI6.730e-1961.54Putative Ntdin n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5K3G8_9PHAE1.350e-1760.00Rhodanese domain-containing protein n=1 Tax=Ectoca... [more]
A0A6L8GEC9_9BACT8.330e-535.82Rhodanese-like domain-containing protein n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10689contigF-distichus_contig10689:7034..7941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue5.3e-14
Seed eggNOG ortholog2880.D7G7C7
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004792,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0007568,GO:0008150,GO:0009507,GO:0009536,GO:0009611,GO:0009719,GO:0009725,GO:0009753,GO:0010033,GO:0016740,GO:0016782,GO:0016783,GO:0032502,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:1901700
EggNOG free text desc.thiosulfate sulfurtransferase activity
EggNOG OGsCOG0607@1,KOG1530@2759
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-04_003300.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.511676-CDS-F-distichus_contig10689:7033..71821622928996.511676-CDS-F-distichus_contig10689:7033..7182Fucus distichus monoicousCDSF-distichus_contig10689 7034..7182 +
1690885098.4440536-CDS-F-distichus_contig10689:7033..71821690885098.4440536-CDS-F-distichus_contig10689:7033..7182Fucus distichus monoicousCDSF-distichus_contig10689 7034..7182 +
1622928996.523418-CDS-F-distichus_contig10689:7880..79411622928996.523418-CDS-F-distichus_contig10689:7880..7941Fucus distichus monoicousCDSF-distichus_contig10689 7881..7941 +
1690885098.4575212-CDS-F-distichus_contig10689:7880..79411690885098.4575212-CDS-F-distichus_contig10689:7880..7941Fucus distichus monoicousCDSF-distichus_contig10689 7881..7941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10689.587.1prot_F-distichus_contig10689.587.1Fucus distichus monoicouspolypeptideF-distichus_contig10689 7034..7941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10689.587.1

>prot_F-distichus_contig10689.587.1 ID=prot_F-distichus_contig10689.587.1|Name=mRNA_F-distichus_contig10689.587.1|organism=Fucus distichus monoicous|type=polypeptide|length=70bp
IKVRANQEFEHGRPADSVNIPAFFSTAQGMMVNPDFVKQAKFMAHGPSRW
LVLGCQMGARSAKVSCHATA
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mRNA from alignment at F-distichus_contig10689:7034..7941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10689.587.1 ID=mRNA_F-distichus_contig10689.587.1|Name=mRNA_F-distichus_contig10689.587.1|organism=Fucus distichus monoicous|type=mRNA|length=908bp|location=Sequence derived from alignment at F-distichus_contig10689:7034..7941+ (Fucus distichus monoicous)
ATCAAAGTGAGGGCCAACCAAGAGTTCGAACACGGTCGCCCGGCGGATTC
CGTGAACATCCCAGCTTTCTTCTCGACGGCTCAGGGCATGATGGTCAACC
CCGATTTCGTCAAGCAGGCAAAGTTCATGGCTCATGGGCCATCTCGATGG
TGTCATGTTCGTGGTACCTTAGGCACCGCAGCCTCCGCAGCGTGCATCAC
CTCTTGCAGCATTTACGAGATGACTGATTGCTTTGATTCCAGGATCAGGG
CAGCAGTAGGCAGGAGACAGTACCTAGTAGACGCCGGTAGCTGGTAGATG
TTGAATGATTTCTGGCTCACTTACTCTTGTAGGAGACTTTTCGAAGAGGG
CATGGGTTTAGCGGAATTTGTGGATGGACACCAATTGGCTACGGTGATAT
AATAGCGTTTTAACGGGCATCGTTCGACACCCTCTTCCCCGCTTGCCATA
TGCCACGTAGTAGAGTAGAGCAACTGACCAGACAAAAAATAATGTGATAG
CCAATGTCCTGGTGGGCATTTTCCAGATAACATCTCTAGTAGTTTTCTGG
TGTTGTACCTTTTTTTCTTCTCCAAGTTATACCCTGAAAACAATCCACGG
ACGAACGTTGTTTTGTATGTAACGCCAAAGGTAAGAGAAGCGAACAGAGC
AGGTCAGTACAATGCCTTACGATGCCGTACAATGTCGCTTTTAGCTCAAC
ACATTTGGTATATAACATTACAGGGCACTATGCATGCTCAATGCGGGCTG
CGTTCTCCTGTCGTTGTTTTTTCATTGTTGTCATCGTCATCATCATCATC
ATCATCATGTATCAGGTCGCCGAAAAGTTCCCCGACAAGTCGTCCAGGCT
CGTGCTGGGGTGTCAAATGGGCGCAAGATCCGCAAAGGTATCATGCCATG
CGACTGCT
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Coding sequence (CDS) from alignment at F-distichus_contig10689:7034..7941+

>mRNA_F-distichus_contig10689.587.1 ID=mRNA_F-distichus_contig10689.587.1|Name=mRNA_F-distichus_contig10689.587.1|organism=Fucus distichus monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at F-distichus_contig10689:7034..7941+ (Fucus distichus monoicous)
ATCAAAGTGAGGGCCAACCAAGAGTTCGAACACGGTCGCCCGGCGGATTC
CGTGAACATCCCAGCTTTCTTCTCGACGGCTCAGGGCATGATGGTCAACC
CCGATTTCGTCAAGCAGGCAAAGTTCATGGCTCATGGGCCATCTCGATGA
TCAAAGTGAGGGCCAACCAAGAGTTCGAACACGGTCGCCCGGCGGATTCC
GTGAACATCCCAGCTTTCTTCTCGACGGCTCAGGGCATGATGGTCAACCC
CGATTTCGTCAAGCAGGCAAAGTTCATGGCTCATGGGCCATCTCGATGGC
TCGTGCTGGGGTGTCAAATGGGCGCAAGATCCGCAAAGGTATCATGCCAT
GCGACTGCTGCTCGTGCTGGGGTGTCAAATGGGCGCAAGATCCGCAAAGG
TATCATGCCATGCGACTGCT
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