mRNA_F-distichus_contig106843.583.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106843.583.1
Unique NamemRNA_F-distichus_contig106843.583.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106843.583.1 vs. uniprot
Match: D7G275_ECTSI (Phosphatidate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G275_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 3.850e-49
Identity = 88/108 (81.48%), Postives = 93/108 (86.11%), Query Frame = 1
Query:    1 DVSTLLTKITSNGYKILYLTNRPLPDWHAKKGGADGA-----LPRGPVLCPPEVLFRSTFSSKDRHSHQEVFKMTALRGLKLIFPADVNPLYAGFGNSVSDMVAFKKV 309
            DVSTL +KI+ NGYKILYLTNRPLPDWHAK+G A  A     LPRGPVLCPPEVLFR T SSKDR SH EVFKMTALRGLKLIFPADVNPLY GFGNSVSDMVA+KK+
Sbjct: 1196 DVSTLFSKISGNGYKILYLTNRPLPDWHAKRGAAAAAEGGVALPRGPVLCPPEVLFRGT-SSKDRRSHHEVFKMTALRGLKLIFPADVNPLYGGFGNSVSDMVAYKKM 1302          
BLAST of mRNA_F-distichus_contig106843.583.1 vs. uniprot
Match: A0A6H5JPH1_9PHAE (LNS2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH1_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 3.860e-49
Identity = 88/108 (81.48%), Postives = 93/108 (86.11%), Query Frame = 1
Query:    1 DVSTLLTKITSNGYKILYLTNRPLPDWHAKKGGADGA-----LPRGPVLCPPEVLFRSTFSSKDRHSHQEVFKMTALRGLKLIFPADVNPLYAGFGNSVSDMVAFKKV 309
            DVSTL +KI+ NGYKILYLTNRPLPDWHAK+G A  A     LPRGPVLCPPEVLFR T SSKDR SH EVFKMTALRGLKLIFPADVNPLY GFGNSVSDMVA+KK+
Sbjct: 1456 DVSTLFSKISGNGYKILYLTNRPLPDWHAKRGAAAAAEGGVALPRGPVLCPPEVLFRGT-SSKDRRSHHEVFKMTALRGLKLIFPADVNPLYGGFGNSVSDMVAYKKM 1562          
BLAST of mRNA_F-distichus_contig106843.583.1 vs. uniprot
Match: A0A0L0D432_THETB (Phosphatidate phosphatase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D432_THETB)

HSP 1 Score: 77.4 bits (189), Expect = 2.390e-14
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    4 VSTLLTKITSNGYKILYLTNRPLP---------DWHAKKGGADGALPRGPVLCPPEVLFRSTFSSKDRHSHQEVFKMTALRGLKLIFPADVNPLYAGFGNSVSDMVAFKKV 309
            VS L   I SNGYKI++L++R +          DW ++ G     LP GP+L  P+ LF S F  +      E FK+  LR L+ +FPA VNP +AGFGN ++D +A+ +V
Sbjct:  671 VSKLFDAIVSNGYKIVFLSSRAIGQMGLTRSYMDWVSEDGVH---LPPGPILVSPDRLFTS-FHREVILRKPEEFKIACLRSLRSVFPAQVNPFHAGFGNRITDAIAYAEV 777          
BLAST of mRNA_F-distichus_contig106843.583.1 vs. uniprot
Match: A0A162PAC4_9CRUS (Phosphatidate phosphatase n=21 Tax=Daphnia magna TaxID=35525 RepID=A0A162PAC4_9CRUS)

HSP 1 Score: 75.9 bits (185), Expect = 8.360e-14
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    4 VSTLLTKITSNGYKILYLTNRPLPDWHAKKG------GADGALPRGPVLCPPEVLFRSTFSSKDRHSHQEVFKMTALRGLKLIFPADVNPLYAGFGNSVSDMVAFKKV 309
            V+ L TKI +NGY+ILYL+ R +   H  +         D +LP GP+L  P  L  S F  +      E FK++ LR ++++FP+  NP YAG+GN V+D+ A++ V
Sbjct:  744 VAQLFTKIKNNGYRILYLSARAIGQAHVTREYLRSVRQGDLSLPDGPLLLNPTSLL-SAFHREVIEKKPEEFKISCLRDIQMLFPSHSNPFYAGYGNRVNDVWAYRAV 850          
BLAST of mRNA_F-distichus_contig106843.583.1 vs. uniprot
Match: E9GU44_DAPPU (Phosphatidate phosphatase n=7 Tax=Daphnia TaxID=6668 RepID=E9GU44_DAPPU)

HSP 1 Score: 75.9 bits (185), Expect = 8.400e-14
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    4 VSTLLTKITSNGYKILYLTNRPLPDWH--------AKKGGADGALPRGPVLCPPEVLFRSTFSSKDRHSHQEVFKMTALRGLKLIFPADVNPLYAGFGNSVSDMVAFKKV 309
            V+ L TKI +NGY+ILYL+ R +   H         K+G  D +LP GP+L  P  L  S F  +      E FK++ LR ++++FP+  NP YAG+GN V+D+ A++ V
Sbjct:  834 VAQLFTKIKNNGYRILYLSARAIGQAHITREYLRSVKQG--DLSLPDGPLLLNPTSLL-SAFHREVIEKKPEEFKISCLRDIQMLFPSHSNPFYAGYGNRVNDVWAYRAV 940          
BLAST of mRNA_F-distichus_contig106843.583.1 vs. uniprot
Match: E0VRY2_PEDHC (Phosphatidate phosphatase n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VRY2_PEDHC)

HSP 1 Score: 75.1 bits (183), Expect = 1.570e-13
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 1
Query:    4 VSTLLTKITSNGYKILYLTNRPLP------DWHAKKGGADGALPRGPVLCPPEVLFRSTFSSKDRHSHQEVFKMTALRGLKLIFPADVNPLYAGFGNSVSDMVAFKKV 309
            V+ L TKI +NGYK+LYL+ R +       D+       D +LP GP+L  P  L  S F  +      E FK++ LR +  +FP DV P YAG+GN V+D+ A++ V
Sbjct:  893 VAQLFTKIKNNGYKLLYLSARAIGQARVTRDYLKSIKQGDLSLPEGPLLLNPTSLI-SAFHREVIEKKPEEFKISCLRDIAALFPPDVKPFYAGYGNRVNDVWAYRAV 999          
BLAST of mRNA_F-distichus_contig106843.583.1 vs. uniprot
Match: A0A2G9GXQ1_9LAMI (Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GXQ1_9LAMI)

HSP 1 Score: 74.3 bits (181), Expect = 2.900e-13
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 1
Query:    4 VSTLLTKITSNGYKILYLTNRPLPD--------WHAKKGGADGALPRGPVLCPPEVLFRSTFSSKDRHSHQEVFKMTALRGLKLIFPADVNPLYAGFGNSVSDMVAFKKV 309
            V+ L + I  NGY++L+L+ R +          ++ K+ G   ALP GPV+  P+ LF S F    R +  E FK+  L  +K +FP D+NP YAGFGN  +D  ++ KV
Sbjct:  780 VANLFSAIKDNGYQLLFLSARSISQSFHTRQFLFNIKQDGK--ALPEGPVVISPDGLFPSLFREVVRRAPHE-FKIACLEAIKALFPLDINPFYAGFGNRDTDEFSYLKV 886          
BLAST of mRNA_F-distichus_contig106843.583.1 vs. uniprot
Match: A0A7S0G2Q6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G2Q6_9RHOD)

HSP 1 Score: 71.6 bits (174), Expect = 3.130e-13
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    4 VSTLLTKITSNGYKILYLTNRPLPDWHAKKG------GADGALPRGPVLCPPEVLFRS-TFSSKDRHSHQEVFKMTALRGLKLIFPADVNPLYAGFGNSVSDMVAFKKV 309
            V+ L  K+ S GY I+YLT+RP+      +         +  LP GPV+  P+ + RS T     R  H+  FK+ ALR ++L+FP D NP YAGFGN  +D++++  V
Sbjct:    2 VTELFHKLISLGYNIIYLTSRPIGQADNTRAYLKNLVQGEVGLPIGPVVMSPDRMIRSITREVILRRPHE--FKIAALREIRLLFPPDFNPFYAGFGNRSTDIISYGAV 108          
BLAST of mRNA_F-distichus_contig106843.583.1 vs. uniprot
Match: A0A7S3GJ51_9EUKA (Hypothetical protein n=3 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GJ51_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 7.220e-13
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    4 VSTLLTKITSNGYKILYLTNRPLPDWHA-----KKGGADGA-LPRGPVLCPPEVLFRSTFSSKDRHSHQEVFKMTALRGLKLIFPADVNPLYAGFGNSVSDMVAFKKV 309
            V+ L +KI  NGY+ LYLT R +          +K   +G  LP GPVL  P+ +  S F+ +      + FK+  LR +K +FP D NP YAGFGN ++D++A++ V
Sbjct:  508 VTELYSKIEKNGYRFLYLTARAIGQAETTRTFLRKLSQEGIQLPDGPVLTSPDRMLAS-FTREVIMRRPQDFKIACLRNVKHVFPVDHNPFYAGFGNRMTDVIAYQSV 614          
BLAST of mRNA_F-distichus_contig106843.583.1 vs. uniprot
Match: I7MFJ3_TETTS (Nuclear elongation and deformation protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MFJ3_TETTS)

HSP 1 Score: 72.4 bits (176), Expect = 9.090e-13
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 1
Query:    1 DVSTLLTKITSNGYKILYLTNRPLPDWHAKKGGADG------ALPRGPVLCPPEVLFRSTFSSKDRHSHQEVFKMTALRGLKLIFPADVNPLYAGFGNSVSDMVA 297
            D++ L T I  NGYK++YL++RPL  ++  +G   G       +P GP+L  P+ +  S+ + +  +   + FK   L+ L+ +FP +VNP++AGFGN  +D  A
Sbjct:  172 DIAELYTNIQKNGYKMVYLSSRPLYFYNYTQGYLKGIIQNGFTMPDGPILLSPDQII-SSLNREVVYKKADEFKGALLKDLRRVFPEEVNPIFAGFGNRDTDATA 275          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106843.583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G275_ECTSI3.850e-4981.48Phosphatidate phosphatase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JPH1_9PHAE3.860e-4981.48LNS2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A0L0D432_THETB2.390e-1440.54Phosphatidate phosphatase n=1 Tax=Thecamonas trahe... [more]
A0A162PAC4_9CRUS8.360e-1438.89Phosphatidate phosphatase n=21 Tax=Daphnia magna T... [more]
E9GU44_DAPPU8.400e-1440.00Phosphatidate phosphatase n=7 Tax=Daphnia TaxID=66... [more]
E0VRY2_PEDHC1.570e-1339.81Phosphatidate phosphatase n=1 Tax=Pediculus humanu... [more]
A0A2G9GXQ1_9LAMI2.900e-1338.18Protein involved in plasmid maintenance/nuclear pr... [more]
A0A7S0G2Q6_9RHOD3.130e-1338.53Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3GJ51_9EUKA7.220e-1338.89Hypothetical protein n=3 Tax=Palpitomonas bilix Ta... [more]
I7MFJ3_TETTS9.090e-1335.24Nuclear elongation and deformation protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106843contigF-distichus_contig106843:276..1168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue5.4e-42
Seed eggNOG ortholog2880.D7G275
KEGG rclassRC00017
KEGG koko:K15728
KEGG ReactionR02239
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol transporter activity
EggNOG OGsCOG5083@1,KOG2116@2759
EC3.1.3.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons2
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.1593626-CDS-F-distichus_contig106843:275..4701622928996.1593626-CDS-F-distichus_contig106843:275..470Fucus distichus monoicousCDSF-distichus_contig106843 276..470 +
1690885098.223479-CDS-F-distichus_contig106843:275..4701690885098.223479-CDS-F-distichus_contig106843:275..470Fucus distichus monoicousCDSF-distichus_contig106843 276..470 +
1622928996.2199543-CDS-F-distichus_contig106843:1042..11681622928996.2199543-CDS-F-distichus_contig106843:1042..1168Fucus distichus monoicousCDSF-distichus_contig106843 1043..1168 +
1690885098.2452369-CDS-F-distichus_contig106843:1042..11681690885098.2452369-CDS-F-distichus_contig106843:1042..1168Fucus distichus monoicousCDSF-distichus_contig106843 1043..1168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106843.583.1prot_F-distichus_contig106843.583.1Fucus distichus monoicouspolypeptideF-distichus_contig106843 276..1168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106843.583.1

>prot_F-distichus_contig106843.583.1 ID=prot_F-distichus_contig106843.583.1|Name=mRNA_F-distichus_contig106843.583.1|organism=Fucus distichus monoicous|type=polypeptide|length=107bp
DVSTLLTKITSNGYKILYLTNRPLPDWHAKKGGADGALPRGPVLCPPEVL
FRSTFSSKDRHSHQEVFKMTALRGLKLIFPADVNPLYAGFGNSVSDMVAF
KKVRGG*
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mRNA from alignment at F-distichus_contig106843:276..1168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106843.583.1 ID=mRNA_F-distichus_contig106843.583.1|Name=mRNA_F-distichus_contig106843.583.1|organism=Fucus distichus monoicous|type=mRNA|length=893bp|location=Sequence derived from alignment at F-distichus_contig106843:276..1168+ (Fucus distichus monoicous)
GACGTGTCAACCCTCTTGACGAAGATCACCAGCAACGGCTACAAGATCTT GTACCTCACAAACCGTCCGCTGCCAGACTGGCATGCTAAGAAGGGCGGAG CGGACGGCGCGCTTCCCCGAGGCCCCGTGCTATGCCCCCCCGAAGTGCTC TTCCGCAGCACCTTCTCTTCCAAGGATAGGCATAGCCACCAGGAGGTAAG CAAACGCTCGCTGTAAAATGGACTGGATTCGTGATCACAAGTTTATAGCT TCTTGGCTCTTCTGGAGAACGGTTGTTTGGAATATGGGCTGTGGATGGAA TGGCGATCCAGGCTATTTTTTTGCATCAAGGAAAGGGGAACGAGTCCATT CGCGCATAAGATTACATAGGATCCGAACATTGGTGGATGCGGCATTGTCT GTTGTGTGCGCTGAAAAATTAAGTTACCCAATAAGAGTCAGTTGCCTTCA CCCAGATGCGGCTAGGGAGATACCATACTTTTATTCAGCAAGGCTTCCTT TTGCGCTCTAACACACCTTCGTTTCGCCACGTCCTGTTCCACCACCCGAA ACATCTGGGAGGGCGGGCGAAGAAACTCGGGCATTTTGGCCGCCGCCTCC TCGATGACGAGTAGGAACCCCTTAACGCTCATTTTCCGCCACGCCTCTCC TGGAAACCCTGATTTTCATTAATACTTCAAAAAAACATATATGTCTACTG CAGTTTCATTGGCGGGTTTTCTACGTGCGTCGGGTGGCGATGGCTTGGGG GCTGTTCGTTTTTGCAGGTATTCAAGATGACGGCCTTGCGAGGACTCAAG CTGATCTTTCCCGCCGACGTGAATCCCCTTTACGCCGGATTCGGCAACTC CGTCAGTGATATGGTGGCCTTCAAGAAGGTAAGGGGAGGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig106843:276..1168+

>mRNA_F-distichus_contig106843.583.1 ID=mRNA_F-distichus_contig106843.583.1|Name=mRNA_F-distichus_contig106843.583.1|organism=Fucus distichus monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at F-distichus_contig106843:276..1168+ (Fucus distichus monoicous)
GACGTGTCAACCCTCTTGACGAAGATCACCAGCAACGGCTACAAGATCTT
GTACCTCACAAACCGTCCGCTGCCAGACTGGCATGCTAAGAAGGGCGGAG
CGGACGGCGCGCTTCCCCGAGGCCCCGTGCTATGCCCCCCCGAAGTGCTC
TTCCGCAGCACCTTCTCTTCCAAGGATAGGCATAGCCACCAGGAGGACGT
GTCAACCCTCTTGACGAAGATCACCAGCAACGGCTACAAGATCTTGTACC
TCACAAACCGTCCGCTGCCAGACTGGCATGCTAAGAAGGGCGGAGCGGAC
GGCGCGCTTCCCCGAGGCCCCGTGCTATGCCCCCCCGAAGTGCTCTTCCG
CAGCACCTTCTCTTCCAAGGATAGGCATAGCCACCAGGAGGTATTCAAGA
TGACGGCCTTGCGAGGACTCAAGCTGATCTTTCCCGCCGACGTGAATCCC
CTTTACGCCGGATTCGGCAACTCCGTCAGTGATATGGTGGCCTTCAAGAA
GGTAAGGGGAGGGTGAGTATTCAAGATGACGGCCTTGCGAGGACTCAAGC
TGATCTTTCCCGCCGACGTGAATCCCCTTTACGCCGGATTCGGCAACTCC
GTCAGTGATATGGTGGCCTTCAAGAAGGTAAGGGGAGGGTGA
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