mRNA_F-distichus_contig10683.582.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10683.582.1 vs. uniprot
Match: D7G7W0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7W0_ECTSI) HSP 1 Score: 410 bits (1053), Expect = 3.160e-118 Identity = 453/1381 (32.80%), Postives = 618/1381 (44.75%), Query Frame = 1
Query: 1 KKKMTKKDAPSSSATSSRSTLTRFLGPSGPPSRALWEDINRQCPVCQRKGFSSRALALHVNECLDVGLREHDDGDGDGASAVREHA----------RTRAPGDVQEETTGAGSKPTAGASRAQKAVKVAKRDSVPARVL--ADSNAQATSSDAAKVPPKIV---SVSKKPSKKAKIQAIQKPVHESTTQKGAVNTQSAQPTQAISKTAMSSPSGSTSKPTLERPHGVLARAREHDPTTDATLGPAEM--VAGTDKGGEGRARLDITRAQLTLVVGNSAQG-AQNAGWVGTRLFPSPTREDDVIAHDGFATR--KDHENGPRSNLASSRVGEVEERPKQSLKGARSRRVRPRPASWGARSCDEH---NGTWR-----DCPHWDYWGDGDGYLTLRPFPASEESAGSDATVEDGEEDR-------PIDGNRADSVHLE-DVAPLSRADRFLQVFELLQPARLALNLEEAMPAPRSGERSGG----------YGKLQPPSNAVVREQKTTDVRTDTKTA--PARCSTPAPQIESNAADTRGCFPNQTAVKAQGTRDAELKH-------LQTVEDVTSTKAASNKHEANKQVEH---RNCSPNIRDAARSPQPDDTSSKTTIVPDPSGISSQRNLPDKTSSEQIRIGERSQTSLQMVDLTSEASSPPTPAAGKNCSPLDCPLGPHEFDSRGGDRGSSSPDESSP----------------ARDALLKRARDGVDVEAAGPNRAKLSFPLQGVAGVPPYLSPAARGA---ASLPAALQVSPLSPGA--TRPSLLERSP--AVANGL-QPTLGQISGTIVDEGEN---GSTYCLGR-----------KNVVRGGAAK------PDVNRAIPSTSK-TVSRLRGKLSYRASSGVLRSADVRQDPKSSGDLDPRSTLGKALARNERATSILRNSSSAAAVADTASGVCGGRVADVAQTGSLTVVDPHHGATLRSSWSIDHSEDLGRLEFGTTLNYDAVWCYPPADEECVAVLRYHIVPHPVWAPKGGWISERGRLRDDPYIIAKA--TPASIPTQGDSN--GEARTASSRRIS--DPFRQRENLGSAALECRSE---------ARPSRIVHGNGGQEAHNRAAGVTISRKSALATDSYWHRTLASPSP--GVRVQPGKPNTLSPPSTSTAGRFGFSTSSSAKLLEANDTGDRVKCPICNQGMDHWPQARRNQHAHNCMLRNSSASKKQASTMQGSSCSSCSKHINAAQGSTKQTKGLPYGDGGVAAEVEPRGSRVPQEFRRHKPSDAGRMEERMTSAPRS-GLPGVNGSPREPKMSLQGVFSPKVGTDALVDFPLIAKSSSMMRHLPLAVANEFAASEGRQECPICRLSFAGRQGQWERDAHIQQCLES 3780
K+ TKKD+P A + STLTRFLGP+GPPSR+ W+D+NRQCPVCQ+ GFSSR+LALHVN+CL+ R D D + A+ R+ A T V E + A + T SR ++++ + ++ + Q AAK + ++ + + A +A K NT++A + + T SSP GS L R LAR + H +DA PA + KG + RA +I +AQL + SA+G A GW+GT+LFP+P E + A DG G + +S VGE ++ +RRVR RPASWGAR DE GTW D D WGDGDGYLTL+ FP E SD GE++R P+D R+ + E AP SR DRFLQVF LQPAR AL L E P P + G G PP+ + T + + A P T P +E TA +G R EL L+T+ +V+ A+N + ++ SP I + +S S K P QR +++ E R E+ + + +S S P P + S + + S G + S+P +SP A DA ++ P A+ L+ G R + ++R+P A +G+ QP S T DE + G+T R ++ GG + P + RAIP++S+ SR RG L+ RASSG+LRSAD+ +S A A N+ + ++SS C GR ADV Q GSLTVV HGATLR SWSID S +LGRL FG L+YDAVW PAD +CV VLRY +VPHP AP GGWIS GRLRDDPYII KA P+ P++ S G+ R S +R DP + +G L + A PSR G+ G+ + + A +S+ R A P+ G R QP P+ + P + S G FG +TS SAK LEAND+GD+V CP+CN+GMDHW +R QH H C+++ S++KK + + G + S S+ S+ Q G +P S P+ RR R E +SA R G G + PR ++SLQGVFSPK D ++ S +G ECP+C +SF GRQGQWER AH+QQCL+S
Sbjct: 28 KRTKTKKDSP---AVAPSSTLTRFLGPAGPPSRSAWDDVNRQCPVCQQTGFSSRSLALHVNDCLERRARA-DASDSESAAGGRKDAAGGVGNPDGRNTATATTVGNEASSAVTDVTGSGSREGNTRRMSREGTPKSKAVHGRGGEKQVRQDKAAKKTKTLQGERAIDTERAASATSKARVSHTRNQAADKTKSNTRAALQHRLPNSTQSSSPDGSQQPNPLRRRALGLARPKGHQIVSDAMPTPAAASNASRARKGCDSRALDEIAQAQLLYLREASARGPAHGGGWLGTKLFPAPDEEGES-ADDGSMDCWCVGTGGGEGAYRSSCGVGECGTGRNTRMR-KENRRVRGRPASWGARPNDEQWGWFGTWPAGGSVDDGGVDCWGDGDGYLTLKAFPPPETLVESD-----GEDERDGGGAVMPVDAARSMRLGEEGSPAPSSRVDRFLQVFSRLQPARRALRLHEP-PTPXXXPQDSGDNRANAKVKNVGTRSPPTAVAPTNKNTVASSSGPQQAERPGGSPTMRPSVEREPGGAGNSARTGTARSCEGERVRELTMPPPKRTALETISEVS----ANNNRRPGATIASSPVQSTSPAIIASFKSVSGHKISRKQPPQEPPQ----QRKPANRSGEEGSRRHEQEDRNRTSSEGSSRKLSLPAPTV-RRTSTFEV-----QACSGGVENSVSAPKGNSPRVVKTPAKIYGPPNESAADAASQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTRRPVAVANENLTIGEHRKRTAHVDRAPVDATTHGVPQPPPRHGSSTGSDEVKRSMPGATVAKKRASSSHERNVRVSSMDAGGHRRSQRDPPPGLQRAIPTSSQWNGSRSRGALASRASSGLLRSADLAA--RSENQRKENENAKVAPAANDGVVDLAGSNSSQLEE-------CEGRKADVRQKGSLTVVW-EHGATLRDSWSIDSSHELGRLAFGALLDYDAVWYLSPADTDCVGVLRYSVVPHPRLAPTGGWISGSGRLRDDPYIIVKAEAAPSIRPSKAASRDRGDGRGGSGQRQPNLDPHHHQGRVGVEGLTKSTHGAADGGYTAAAPSR---GHAGRSRGTNXXXXXXAERYEPAEESHSDRVSAGPTAEGGRRTQPQTPSRVLPKAVSAGGSFGLATSPSAKALEANDSGDKVTCPVCNRGMDHWKSGQRQQHVHACLMKQPSSAKK--TRLAGDATPSASRPSGITHRSSLQFDGSS----------DPGESTTPRPERR---PGVRRTEGTGSSANRQEGPSGPSEGPRSSRVSLQGVFSPKPARDP-DGTNTVSASRGTAPXXXXXXXXXXXXXKGLTECPVCGVSFGGRQGQWERQAHVQQCLDS 1353 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10683.582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10683.582.1 >prot_F-distichus_contig10683.582.1 ID=prot_F-distichus_contig10683.582.1|Name=mRNA_F-distichus_contig10683.582.1|organism=Fucus distichus monoicous|type=polypeptide|length=1257bp MTKKDAPSSSATSSRSTLTRFLGPSGPPSRALWEDINRQCPVCQRKGFSSback to top mRNA from alignment at F-distichus_contig10683:4175..10794- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10683.582.1 ID=mRNA_F-distichus_contig10683.582.1|Name=mRNA_F-distichus_contig10683.582.1|organism=Fucus distichus monoicous|type=mRNA|length=6620bp|location=Sequence derived from alignment at F-distichus_contig10683:4175..10794- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10683:4175..10794- >mRNA_F-distichus_contig10683.582.1 ID=mRNA_F-distichus_contig10683.582.1|Name=mRNA_F-distichus_contig10683.582.1|organism=Fucus distichus monoicous|type=CDS|length=7542bp|location=Sequence derived from alignment at F-distichus_contig10683:4175..10794- (Fucus distichus monoicous)back to top |