mRNA_F-distichus_contig106766.578.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106766.578.1
Unique NamemRNA_F-distichus_contig106766.578.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106766.578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106766contigF-distichus_contig106766:43..940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size342
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106766.578.1prot_F-distichus_contig106766.578.1Fucus distichus monoicouspolypeptideF-distichus_contig106766 43..940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.4374595-CDS-F-distichus_contig106766:42..1571622928995.4374595-CDS-F-distichus_contig106766:42..157Fucus distichus monoicousCDSF-distichus_contig106766 43..157 -
1690885097.8220935-CDS-F-distichus_contig106766:42..1571690885097.8220935-CDS-F-distichus_contig106766:42..157Fucus distichus monoicousCDSF-distichus_contig106766 43..157 -
1622928995.458734-CDS-F-distichus_contig106766:464..6001622928995.458734-CDS-F-distichus_contig106766:464..600Fucus distichus monoicousCDSF-distichus_contig106766 465..600 -
1690885097.835559-CDS-F-distichus_contig106766:464..6001690885097.835559-CDS-F-distichus_contig106766:464..600Fucus distichus monoicousCDSF-distichus_contig106766 465..600 -
1622928995.4751468-CDS-F-distichus_contig106766:849..9401622928995.4751468-CDS-F-distichus_contig106766:849..940Fucus distichus monoicousCDSF-distichus_contig106766 850..940 -
1690885097.8442163-CDS-F-distichus_contig106766:849..9401690885097.8442163-CDS-F-distichus_contig106766:849..940Fucus distichus monoicousCDSF-distichus_contig106766 850..940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106766.578.1

>prot_F-distichus_contig106766.578.1 ID=prot_F-distichus_contig106766.578.1|Name=mRNA_F-distichus_contig106766.578.1|organism=Fucus distichus monoicous|type=polypeptide|length=114bp
LQVDVGGGNCRRHGGGRRCGADGCLKTDVGGGFCVSHGGGKRCQADGCAK
GAQAGGVFCKSHGGGRRCRIEGCMTSAQSGAGVLCIKHGGGKRCLVPGCQ
KLVRKSNRCTKHAS
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mRNA from alignment at F-distichus_contig106766:43..940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106766.578.1 ID=mRNA_F-distichus_contig106766.578.1|Name=mRNA_F-distichus_contig106766.578.1|organism=Fucus distichus monoicous|type=mRNA|length=898bp|location=Sequence derived from alignment at F-distichus_contig106766:43..940- (Fucus distichus monoicous)
TTGCAGGTGGACGTTGGGGGGGGTAACTGTCGAAGGCATGGAGGGGGGCG
GCGTTGTGGAGCTGATGGCTGTCTTAAGACCGATGTCGGAGGTGAGATGC
TCGCCAGCGCGCCTAGAATTCAACGAGCAAACACTTTTTATTGTGTTTGT
AGCGCGGAACATGGTGCTGTGTCGGCCGTCCCCAGAAGTCTAATGGAGCG
ACCAGTCGAAATCCGAATCTCGTCTCTTGAGCATTCTCTTACGTGTGGTA
TCCGTCACTAAGTGTCTGGAATTACAGGGTAAAGCTCTTGCTGCCTACCG
ACGAAAAACACCTCTCGCCCGCCATTGCTTCGCGAGAAAGGAGGGTTTTG
CGTCAGCCACGGAGGCGGAAAGCGCTGCCAGGCCGATGGGTGCGCCAAGG
GAGCGCAAGCAGGGGGGGTGTTCTGCAAATCACACGGTGGCGGAAGGCGC
TGCCGCATCGAAGGGTGTATGACGAGGTGAGAGTGAGAGCACGCAAAGTA
GAGTCGCAACCAAGCGTGTTCGCTCCCTACATAATCCAGTCGCGATAAGG
GGAATATTCGCGTACGGTCGTAGAAAACATCTTGGCGTTCGTCAATTTCA
CGATTCGGCTTTAATATCCCGTGCATATGTTAAGAAAATCGTGCGGTGGC
CCATGATTCTCCGCGAACGCTCGCTCACGTGAACAATATTTCAGCATATA
TTTCAGCATATCCGTCACCACCATCGCCACCTCGGCCGCTCTCCTGACTT
ACTGAGTAGCCTTACGTTTTGCGCCCCCCGCAGTGCTCAAAGTGGCGCAG
GCGTGCTGTGCATCAAGCACGGCGGCGGCAAGCGGTGCCTTGTGCCGGGG
TGCCAAAAACTCGTGCGAAAGAGCAACCGATGTACGAAGCACGCCTCG
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Coding sequence (CDS) from alignment at F-distichus_contig106766:43..940-

>mRNA_F-distichus_contig106766.578.1 ID=mRNA_F-distichus_contig106766.578.1|Name=mRNA_F-distichus_contig106766.578.1|organism=Fucus distichus monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at F-distichus_contig106766:43..940- (Fucus distichus monoicous)
TTGCAGGTGGACGTTGGGGGGGGTAACTGTCGAAGGCATGGAGGGGGGCG
GCGTTGTGGAGCTGATGGCTGTCTTAAGACCGATGTCGGAGTTGCAGGTG
GACGTTGGGGGGGGTAACTGTCGAAGGCATGGAGGGGGGCGGCGTTGTGG
AGCTGATGGCTGTCTTAAGACCGATGTCGGAGGAGGGTTTTGCGTCAGCC
ACGGAGGCGGAAAGCGCTGCCAGGCCGATGGGTGCGCCAAGGGAGCGCAA
GCAGGGGGGGTGTTCTGCAAATCACACGGTGGCGGAAGGCGCTGCCGCAT
CGAAGGGTGTATGACGAGGAGGGTTTTGCGTCAGCCACGGAGGCGGAAAG
CGCTGCCAGGCCGATGGGTGCGCCAAGGGAGCGCAAGCAGGGGGGGTGTT
CTGCAAATCACACGGTGGCGGAAGGCGCTGCCGCATCGAAGGGTGTATGA
CGAGTGCTCAAAGTGGCGCAGGCGTGCTGTGCATCAAGCACGGCGGCGGC
AAGCGGTGCCTTGTGCCGGGGTGCCAAAAACTCGTGCGAAAGAGCAACCG
ATGTACGAAGCACGCCTCGTGCTCAAAGTGGCGCAGGCGTGCTGTGCATC
AAGCACGGCGGCGGCAAGCGGTGCCTTGTGCCGGGGTGCCAAAAACTCGT
GCGAAAGAGCAACCGATGTACGAAGCACGCCTCG
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