mRNA_F-distichus_contig10666.570.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10666.570.1
Unique NamemRNA_F-distichus_contig10666.570.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10666.570.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.020e-56
Identity = 90/138 (65.22%), Postives = 111/138 (80.43%), Query Frame = 1
Query:    1 YKEKMLNDVFPAIKRLWPGG-DRDVWVQQDNAPTHNIADDPDIVAAGTADGWNIRLLNQPPNSPDTNILDLGFFNSIQSLQDRTKLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFKLPHLRK 411
            +K K++++VFPAIK  WPGG  R +++Q DN P+H I  DPD+VAAG ADGW+IRL+NQP NSPDTNILDLGFFN++QSLQDR    TVDE I EVKR F+ Q P+T  KVW + QA+L QI+LAKG+NTFKLPHL+K
Sbjct:  127 FKRKVVDEVFPAIKARWPGGRGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAIL-QIILAKGNNTFKLPHLKK 263          
BLAST of mRNA_F-distichus_contig10666.570.1 vs. uniprot
Match: A0A6H5K9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R2_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 6.440e-48
Identity = 77/109 (70.64%), Postives = 90/109 (82.57%), Query Frame = 1
Query:   85 DNAPTHNIADDPDIVAAGTADGWNIRLLNQPPNSPDTNILDLGFFNSIQSLQDRTKLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFKLPHLRK 411
            DN P+H I  DPD+VAAGTADGW+IRL+NQP N P TNILDLGFFN+IQSLQDRT   TVDE I EVKR F+ Q P+TL KVW + QA+L++I+LAKGDNT KLPHL+K
Sbjct:    4 DNKPSHCINADPDVVAAGTADGWDIRLINQPSNIPHTNILDLGFFNAIQSLQDRTTPRTVDEFIIEVKRAFEEQSPSTLDKVWESLQAILQEIILAKGDNTIKLPHLKK 112          
BLAST of mRNA_F-distichus_contig10666.570.1 vs. uniprot
Match: A0A484KHV7_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KHV7_9ASTE)

HSP 1 Score: 144 bits (362), Expect = 5.180e-39
Identity = 70/137 (51.09%), Postives = 95/137 (69.34%), Query Frame = 1
Query:    4 KEKMLNDVFPAIKRLWPGG-DRDVWVQQDNAPTHNIADDPDIVAAGTADGWNIRLLNQPPNSPDTNILDLGFFNSIQSLQDRTKLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFKLPHLRK 411
            K+ ++N V PAI+  WP    +D+ +QQDNA  H    D D +AAG  +G++I L NQPPNSPD N+LDLGFF +IQSL+D+  L+TV EL+E V+  +DA  P TL KVW +YQ VL ++M  +G N +KLPH+ K
Sbjct:  183 KDMLINKVIPAIQEKWPSHLSKDIHIQQDNAMPHIQGVDSDFMAAGNTNGFHITLHNQPPNSPDLNVLDLGFFRAIQSLKDQCALSTVVELLEAVEGAYDALSPQTLNKVWLSYQQVLTKVMENEGGNNYKLPHMGK 319          
BLAST of mRNA_F-distichus_contig10666.570.1 vs. uniprot
Match: W2PCU6_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PCU6_PHYPN)

HSP 1 Score: 140 bits (352), Expect = 6.950e-38
Identity = 68/139 (48.92%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    1 YKEKMLNDVFPAIKRLWP--GGDRDVWVQQDNAPTHNIADDPDIVAAGTADGWNIRLLNQPPNSPDTNILDLGFFNSIQSLQDRTKLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFKLPHLRK 411
            YK  ++ D+ PAIK  WP  G  R +++QQDNA  H   DDPDI+AAG + GW+IR+  QPPNSPD N+LDLG+F SIQSLQ +T+   V+ L++ V   F A +  TL K++ T Q  +E I+ A G N +K PH  K
Sbjct:  145 YKATLIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPHVSVDDPDIMAAGRSGGWDIRMRCQPPNSPDLNVLDLGYFRSIQSLQYQTECRGVEALLDAVNSAFSAMKADTLNKIFMTLQTCMECIIRANGGNNYKTPHRGK 283          
BLAST of mRNA_F-distichus_contig10666.570.1 vs. uniprot
Match: W2QAD0_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QAD0_PHYPN)

HSP 1 Score: 140 bits (353), Expect = 7.870e-38
Identity = 68/139 (48.92%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    1 YKEKMLNDVFPAIKRLWP--GGDRDVWVQQDNAPTHNIADDPDIVAAGTADGWNIRLLNQPPNSPDTNILDLGFFNSIQSLQDRTKLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFKLPHLRK 411
            YK  ++ D+ PAIK  WP  G  R +++QQDNA  H   DDPDI+AAG + GW+IR+  QPPNSPD N+LDLG+F SIQSLQ +T+   V+ L++ V   F A +  TL+K++ T Q  +E I  A G N +K PH  K
Sbjct:  167 YKATLIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPHVSVDDPDIMAAGRSGGWDIRMRCQPPNSPDLNVLDLGYFRSIQSLQYQTECRGVEALLDTVNSAFSAMKADTLSKIFMTLQTCMECITRANGGNNYKTPHRGK 305          
BLAST of mRNA_F-distichus_contig10666.570.1 vs. uniprot
Match: A0A484MU55_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MU55_9ASTE)

HSP 1 Score: 142 bits (358), Expect = 1.280e-37
Identity = 69/137 (50.36%), Postives = 94/137 (68.61%), Query Frame = 1
Query:    4 KEKMLNDVFPAIKRLWPGG-DRDVWVQQDNAPTHNIADDPDIVAAGTADGWNIRLLNQPPNSPDTNILDLGFFNSIQSLQDRTKLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFKLPHLRK 411
            K+ ++N V PAI+  WP   DR++ +QQDNA  H  A DP+ +AA + +G+NI L NQPPNSPD NILDLGFF +IQSL+++T    V EL+E VK  +    P TL KVW +YQ V++++M   G N +KLPH+ K
Sbjct:  304 KDMLVNQVIPAIREKWPSFLDRNIILQQDNAKPHISATDPEFMAAASGNGFNIILTNQPPNSPDLNILDLGFFRAIQSLKEKTAPKNVAELVEAVKGAYATLTPQTLNKVWLSYQHVMQEVMNNDGGNKYKLPHMAK 440          
BLAST of mRNA_F-distichus_contig10666.570.1 vs. uniprot
Match: A0A4Q9LUD7_9MICR (Uncharacterized protein (Fragment) n=2 Tax=Hamiltosporidium TaxID=1176354 RepID=A0A4Q9LUD7_9MICR)

HSP 1 Score: 132 bits (331), Expect = 1.070e-36
Identity = 70/129 (54.26%), Postives = 86/129 (66.67%), Query Frame = 1
Query:   31 PAIKRLWPGGDRD--VWVQQDNAPTHNIADDPDIVAAGTADGWNIRLLNQPPNSPDTNILDLGFFNSIQSLQDRTKLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFKLPHLRK 411
            PAIK  +P  D+   ++VQQDNA  H   +D DIVA G+AD WNI+   QP NSPD N+LDLGFFNSIQSLQ     +T+DELI  V+  F   E  TL  V+TT QA +E IMLA G N +K+PH+ K
Sbjct:    1 PAIKSKFPPADKKKIIYVQQDNAKPHFSDNDADIVALGSADDWNIKFKAQPANSPDFNVLDLGFFNSIQSLQHEASPHTIDELINCVQDAFHQLEANTLDNVFTTLQACMESIMLADGGNGYKIPHISK 129          
BLAST of mRNA_F-distichus_contig10666.570.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.430e-36
Identity = 67/138 (48.55%), Postives = 94/138 (68.12%), Query Frame = 1
Query:    1 YKEKMLNDVFPAIKRLWPGG-DRDVWVQQDNAPTHNIADDPDIVAAGTADGWNIRLLNQPPNSPDTNILDLGFFNSIQSLQDRTKLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFKLPHLRK 411
            Y+  +++ V PAI+  WPG     ++VQQDNA  H   DDP+++AAG  +GWNI+L+ QP  SPD N+LDLGFFN+IQSLQ +T   T+D+LI+ V+  F+      L K + T Q V+E+ M + GDN +KLPHL+K
Sbjct:  266 YRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVLAAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFENLAWRVLDKTFMTLQKVMEEAMRSSGDNVYKLPHLKK 403          
BLAST of mRNA_F-distichus_contig10666.570.1 vs. uniprot
Match: A0A024UI08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI08_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.720e-36
Identity = 64/138 (46.38%), Postives = 89/138 (64.49%), Query Frame = 1
Query:    1 YKEKMLNDVFPAIKRLWPGG-DRDVWVQQDNAPTHNIADDPDIVAAGTADGWNIRLLNQPPNSPDTNILDLGFFNSIQSLQDRTKLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFKLPHLRK 411
            Y+  +++ V PAIK  WPG   + +WVQQD+A  H   DD  ++AAG +DGW+IRL  QP  SPD N+LDLG FN+IQSLQ  T   T++EL+  V + +D  +P  L K + T Q V+E ++   GDN +K+PH  K
Sbjct:  131 YRSFLVDKVIPAIKSRWPGRRSKTIWVQQDSARPHVAVDDAPVLAAGQSDGWDIRLCAQPSQSPDMNVLDLGLFNAIQSLQHHTASYTIEELVLAVSKAYDDLDPLVLDKTFMTLQKVMECVLKMDGDNVYKIPHANK 268          
BLAST of mRNA_F-distichus_contig10666.570.1 vs. uniprot
Match: A0A484N929_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N929_9ASTE)

HSP 1 Score: 137 bits (345), Expect = 1.780e-36
Identity = 68/137 (49.64%), Postives = 93/137 (67.88%), Query Frame = 1
Query:    4 KEKMLNDVFPAIKRLWPGG-DRDVWVQQDNAPTHNIADDPDIVAAGTADGWNIRLLNQPPNSPDTNILDLGFFNSIQSLQDRTKLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFKLPHLRK 411
            KE ++N V PAI+  WP    + + +QQDNA  H    D D VAAG ++G+ I L NQPPNSPD N+LDLGFF +IQSL+D+   +TV +L++ V+  ++A  P TL KVW +YQ VL +IM  +G N +KLPH+ K
Sbjct:  183 KEMLINTVIPAIQEKWPSQLSKIIQIQQDNARPHIQGIDTDFVAAGNSNGFQITLCNQPPNSPDLNVLDLGFFRAIQSLKDQCAPSTVADLLDAVEGAYNALSPETLNKVWLSYQQVLTKIMEHEGGNNYKLPHMGK 319          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10666.570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGY9_9PHAE1.020e-5665.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9R2_9PHAE6.440e-4870.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A484KHV7_9ASTE5.180e-3951.09Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
W2PCU6_PHYPN6.950e-3848.92Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
W2QAD0_PHYPN7.870e-3848.92Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A484MU55_9ASTE1.280e-3750.36Uncharacterized protein n=2 Tax=Cuscuta campestris... [more]
A0A4Q9LUD7_9MICR1.070e-3654.26Uncharacterized protein (Fragment) n=2 Tax=Hamilto... [more]
A0A6A5AA16_9STRA1.430e-3648.55Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024UI08_9STRA1.720e-3646.38Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A484N929_9ASTE1.780e-3649.64Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10666contigF-distichus_contig10666:2168..2578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue8.6e-29
Seed eggNOG ortholog157072.XP_008866696.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.9342806-CDS-F-distichus_contig10666:2167..25661622928993.9342806-CDS-F-distichus_contig10666:2167..2566Fucus distichus monoicousCDSF-distichus_contig10666 2168..2566 -
1690885097.2703853-CDS-F-distichus_contig10666:2167..25661690885097.2703853-CDS-F-distichus_contig10666:2167..2566Fucus distichus monoicousCDSF-distichus_contig10666 2168..2566 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.9507287-UTR-F-distichus_contig10666:2566..25781622928993.9507287-UTR-F-distichus_contig10666:2566..2578Fucus distichus monoicousUTRF-distichus_contig10666 2567..2578 -
1690885097.2819052-UTR-F-distichus_contig10666:2566..25781690885097.2819052-UTR-F-distichus_contig10666:2566..2578Fucus distichus monoicousUTRF-distichus_contig10666 2567..2578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10666.570.1prot_F-distichus_contig10666.570.1Fucus distichus monoicouspolypeptideF-distichus_contig10666 2168..2566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10666.570.1

>prot_F-distichus_contig10666.570.1 ID=prot_F-distichus_contig10666.570.1|Name=mRNA_F-distichus_contig10666.570.1|organism=Fucus distichus monoicous|type=polypeptide|length=133bp
MLNDVFPAIKRLWPGGDRDVWVQQDNAPTHNIADDPDIVAAGTADGWNIR
LLNQPPNSPDTNILDLGFFNSIQSLQDRTKLNTVDELIEEVKRVFDAQEP
ATLAKVWTTYQAVLEQIMLAKGDNTFKLPHLRK
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mRNA from alignment at F-distichus_contig10666:2168..2578-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10666.570.1 ID=mRNA_F-distichus_contig10666.570.1|Name=mRNA_F-distichus_contig10666.570.1|organism=Fucus distichus monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at F-distichus_contig10666:2168..2578- (Fucus distichus monoicous)
TACAAGGAGAAGATGCTGAACGACGTGTTCCCGGCCATCAAGCGCTTGTG GCCGGGTGGGGACCGAGACGTCTGGGTGCAACAGGACAATGCTCCTACTC ACAACATCGCCGACGACCCGGACATTGTGGCCGCGGGTACTGCCGACGGG TGGAACATCAGGCTCCTCAACCAGCCGCCCAACAGCCCCGACACGAACAT CCTGGACTTAGGGTTCTTCAATTCCATCCAATCTCTCCAAGACAGGACTA AGCTCAACACGGTGGACGAGCTCATCGAGGAGGTCAAGCGGGTGTTCGAC GCGCAGGAGCCTGCAACCCTTGCAAAGGTCTGGACGACCTACCAGGCCGT CCTCGAACAGATCATGCTGGCCAAGGGCGACAACACGTTCAAGCTGCCCC ACCTGCGCAAG
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Coding sequence (CDS) from alignment at F-distichus_contig10666:2168..2578-

>mRNA_F-distichus_contig10666.570.1 ID=mRNA_F-distichus_contig10666.570.1|Name=mRNA_F-distichus_contig10666.570.1|organism=Fucus distichus monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at F-distichus_contig10666:2168..2578- (Fucus distichus monoicous)
ATGCTGAACGACGTGTTCCCGGCCATCAAGCGCTTGTGGCCGGGTGGGGA
CCGAGACGTCTGGGTGCAACAGGACAATGCTCCTACTCACAACATCGCCG
ACGACCCGGACATTGTGGCCGCGGGTACTGCCGACGGGTGGAACATCAGG
CTCCTCAACCAGCCGCCCAACAGCCCCGACACGAACATCCTGGACTTAGG
GTTCTTCAATTCCATCCAATCTCTCCAAGACAGGACTAAGCTCAACACGG
TGGACGAGCTCATCGAGGAGGTCAAGCGGGTGTTCGACGCGCAGGAGCCT
GCAACCCTTGCAAAGGTCTGGACGACCTACCAGGCCGTCCTCGAACAGAT
CATGCTGGCCAAGGGCGACAACACGTTCAAGCTGCCCCACCTGCGCAAGA
TGCTGAACGACGTGTTCCCGGCCATCAAGCGCTTGTGGCCGGGTGGGGAC
CGAGACGTCTGGGTGCAACAGGACAATGCTCCTACTCACAACATCGCCGA
CGACCCGGACATTGTGGCCGCGGGTACTGCCGACGGGTGGAACATCAGGC
TCCTCAACCAGCCGCCCAACAGCCCCGACACGAACATCCTGGACTTAGGG
TTCTTCAATTCCATCCAATCTCTCCAAGACAGGACTAAGCTCAACACGGT
GGACGAGCTCATCGAGGAGGTCAAGCGGGTGTTCGACGCGCAGGAGCCTG
CAACCCTTGCAAAGGTCTGGACGACCTACCAGGCCGTCCTCGAACAGATC
ATGCTGGCCAAGGGCGACAACACGTTCAAGCTGCCCCACCTGCGCAAG
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