mRNA_F-distichus_contig106649.568.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106649.568.1
Unique NamemRNA_F-distichus_contig106649.568.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A8B6DTV2_MYTGA (RT_RNaseH domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DTV2_MYTGA)

HSP 1 Score: 71.2 bits (173), Expect = 1.730e-11
Identity = 57/158 (36.08%), Postives = 79/158 (50.00%), Query Frame = 1
Query:    1 LHRIRQEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQN--MTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTYKKGLSKIVVPPDCCARCGIKQHSDRRK-DCPANDF-CFKYGIKGHFRKLC 462
            LH +RQ+  +PV+SF A L+ +A  C  K      TC T+ +Y+   I  +   G+SD E+Q DLL ++N  MTL +      A ++ KRS   L  SQ V A  S+YKK  +K     D     G    +  RK DCPA    C     + HF K+C
Sbjct:  135 LHNMRQDRDEPVRSFCARLRGQAGVC--KFFIQCPTCNTDVNYTDTIIRDVLARGISDPEIQLDLLGDKNQDMTLEEVTQFVEAKDSGKRSASRLLDSQTVQAASSSYKK--AKQTAVRDKNEGHGKSAPARLRKSDCPAYGHKCGYCNREHHFEKVC 288          
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A8B6EW11_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EW11_MYTGA)

HSP 1 Score: 63.2 bits (152), Expect = 6.210e-9
Identity = 45/128 (35.16%), Postives = 61/128 (47.66%), Query Frame = 1
Query:  109 CQTENSYSQPGILGLFINGVSDLELQQDLLAEQN--MTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTYKKGLSKIVVPP-DCCARCGIKQHSD------RRKDCPANDF-CFKYGIKGHFRKLC 462
            C T+ +Y+   I  +   G+SD E+Q DLL ++N  MTL +      A ++ KRS   L  SQ V A  S+YKK     V    + C  CG K H        R+ DCPA    C     + HF K+C
Sbjct:  118 CNTDVNYTDTIIRDVLARGISDPEIQLDLLGDKNQDMTLEEVTQFVEAKDSGKRSASRLLDSQTVQAASSSYKKAKQTAVRDKNEVCTYCGKKGHGKSAPARLRKSDCPAYGHKCGYCNREHHFEKVC 245          
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A8B6BPD7_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BPD7_MYTGA)

HSP 1 Score: 61.6 bits (148), Expect = 2.490e-8
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    1 LHRIRQEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQN--MTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTY 318
            LH +RQ+  +PV+SF A L+ +A  C  K      TC T  +Y+   I  +   G+SD E+Q DLL ++N  MTL +      A ++ KRS   L  SQ V A  S+Y
Sbjct:  196 LHNMRQDRDEPVRSFCARLRGQAGVC--KFFIQCPTCNTHVNYTDTIIRDVLARGISDPEIQLDLLGDKNQDMTLEEVTQFVEAKDSGKRSASRLLDSQTVQAASSSY 301          
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A6J8D1U7_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8D1U7_MYTCO)

HSP 1 Score: 57.0 bits (136), Expect = 1.290e-6
Identity = 48/152 (31.58%), Postives = 69/152 (45.39%), Query Frame = 1
Query:    1 LHRIRQEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQN--MTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTYKKGLSKIVVPPDCCARCGIKQHSDRRKDCPAN---DFCFKYGIK 441
            LH + Q+  +PV+SF A L+ +A  C  K      TC T+ + +   I  +   G+SD E+Q DLL ++N  MT  +      A ++ KRS+  L  SQ V A  S+Y    +K     D    C  +      K  PA      C  YG K
Sbjct:  135 LHNMHQDRDEPVRSFCARLRGQAGVC--KFFIKCPTCNTDVNNTDTFIRDVLARGISDPEIQLDLLGDKNQDMTFEEVAQFVEAKDSGKRSR--LLDSQMVQAASSSY----AKQTAVRDINEVCSYRDKKGHGKSAPARLRKSDCLAYGHK 278          
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: UPI001425577A (uncharacterized protein LOC117106373 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425577A)

HSP 1 Score: 56.2 bits (134), Expect = 1.960e-6
Identity = 49/169 (28.99%), Postives = 73/169 (43.20%), Query Frame = 1
Query:    4 HRIRQEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQNMTLAKAVTLAVACETA-------KRSQEVLNTSQQVAAGISTYKKGLSKIVVPPDC-------CARCG-IKQHSDRRKDCPAND-FCFKYGIKGHFRKLC 462
            H+  Q  G+P+Q++LA L+  A  CD              +  +  +    + G+++  +Q+ LLAE  +TL KAV LAVA + A       ++S    NT+   +  I   K    +    P         C  CG +  H  R+  CPA D  C     KGHF K C
Sbjct:   93 HKRDQHHGEPIQTYLAELRRLAMTCDF------------GNTLEDTLRDRLVCGLNNSHIQKRLLAEDKLTLQKAVELAVAMDAAHKDAIELQKSHNPNNTNGGKSDVIHAAKHKTERFSKKPKAKFSQKSTCRNCGGVYPH--RQAPCPAADKSCHHCSRKGHFAKFC 247          
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A8C1NQP4_CYPCA (Ribonuclease H n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1NQP4_CYPCA)

HSP 1 Score: 53.5 bits (127), Expect = 2.460e-5
Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 1
Query:   16 QEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQNMTLAKAVTLAVACETAKRSQEVLNT--------SQQVAAGISTYKKGLSKIVVPPDC--CARCGIKQHSDRRKDCPA-NDFCFKYGIKGHFRKLC 462
            Q+ G+   SFL +LK KA+ C+  L+  ++            +    + G++D ++++ LL E  +TL +AV +  A E A +  +  +         +  VAA     K G+SK+    +   C RCG K+H    K CPA    C K   + HF K C
Sbjct:  103 QQQGETFDSFLVDLKLKAKTCNFGLLQDSM------------VRDQIVFGINDKKVRERLLRETELTLNEAVRICQASEIAIQHAKTFSEHTKMSGSDNSAVAAVTEKQKSGMSKLKQQKELFNCKRCG-KRHLP--KQCPAYGKVCAKCKGQNHFAKQC 247          
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A6A4VT35_AMPAM (Retrovirus-related Pol polyprotein from transposon opus n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VT35_AMPAM)

HSP 1 Score: 52.4 bits (124), Expect = 6.070e-5
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 1
Query:   16 QEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQNMTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTYKKGLS 333
            QEPG+    +L  LK  A+ CD       + C+ E    +       +NG+SD E  Q +LAE  +TL KA+ +  A E+AKR+  VL  +   A  +S Y++G S
Sbjct:  189 QEPGETFDDYLVALKELAQFCDFC-----VHCRDEQFRDR------LVNGISDQESLQAMLAEPELTLEKAIKICRANESAKRNAAVLRPATVQA--MSAYRRGRS 281          
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A6J8C7S5_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8C7S5_MYTCO)

HSP 1 Score: 52.0 bits (123), Expect = 7.490e-5
Identity = 38/110 (34.55%), Postives = 54/110 (49.09%), Query Frame = 1
Query:  109 CQTENSYSQPGILGLFINGVSDLELQQDLLAEQN--MTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTYKKGLSKIVVPP-DCCARCGIKQHSD------RRKDCPA 411
            C T+ +Y+   I  +   G+S+ E+Q DLL ++N  MTL +      A ++ KRS   L  S  V A  S+YKK     V    + C+ CG K H        R+ DCPA
Sbjct:  202 CNTDVNYTDTIIRDVLARGISNPEIQLDLLGDKNQDMTLEEVTQFVEAKDSWKRSASRLLDSLMVEAVSSSYKKAKQTAVRDKNEVCSYCGKKVHGKSASARLRKSDCPA 311          
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A6A4WBW2_AMPAM (Uncharacterized protein n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WBW2_AMPAM)

HSP 1 Score: 52.0 bits (123), Expect = 7.540e-5
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 1
Query:   16 QEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQNMTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTYKKGLS 333
            QEPG+    +L  LK  A+ CD       + C+ E    +       +NG+SD E  Q +LAE  +TL KA+ +  A E+AKR+  VL  +   A  +S Y++G S
Sbjct:  189 QEPGETFDDYLVALKELAQFCDFC-----VHCRGEQFRDR------LVNGISDQESLQAMLAEPELTLEKAIKICRANESAKRNAAVLRPATVQA--MSAYRRGRS 281          
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: UPI001C368334 (Uncharacterized protein n=3 Tax=Manduca sexta TaxID=7130 RepID=UPI001C368334)

HSP 1 Score: 51.6 bits (122), Expect = 9.400e-5
Identity = 47/161 (29.19%), Postives = 74/161 (45.96%), Query Frame = 1
Query:   13 RQEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQNMTLAKAVTLAVACETAKRSQEVL-----NTSQQVAA----GISTYKK-GLSKIVVPPDCCARCGIKQHSDRRKDCPANDF-CFKYGIKGHFRKLC 462
            RQ+ G+ V  F+A LK  +RQC+ K        +T N      +   F+ G++   ++Q L AE +++ + AVTLA++ E A+R    +     NTSQ         ++ Y+  G          C+ CGI  H   R  C    F C   G  GH +++C
Sbjct:   99 RQQSGETVSQFVAELKRLSRQCEFK--------ETLND----NLRDQFVCGLTSDVIRQRLFAESDLSYSYAVTLAMSLEAAERDSAAVEGNKANTSQGADGLYDITVANYQHAGSGATKENAGSCSICGIFGHRAMR--CRYKHFKCNDCGKVGHLKRMC 245          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A8B6DTV2_MYTGA1.730e-1136.08RT_RNaseH domain-containing protein n=1 Tax=Mytilu... [more]
A0A8B6EW11_MYTGA6.210e-935.16Uncharacterized protein n=1 Tax=Mytilus galloprovi... [more]
A0A8B6BPD7_MYTGA2.490e-837.96Uncharacterized protein n=1 Tax=Mytilus galloprovi... [more]
A0A6J8D1U7_MYTCO1.290e-631.58Uncharacterized protein n=1 Tax=Mytilus coruscus T... [more]
UPI001425577A1.960e-628.99uncharacterized protein LOC117106373 n=1 Tax=Annei... [more]
A0A8C1NQP4_CYPCA2.460e-528.75Ribonuclease H n=2 Tax=Cyprinus carpio TaxID=7962 ... [more]
A0A6A4VT35_AMPAM6.070e-534.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A6J8C7S5_MYTCO7.490e-534.55Uncharacterized protein n=1 Tax=Mytilus coruscus T... [more]
A0A6A4WBW2_AMPAM7.540e-534.91Uncharacterized protein n=1 Tax=Amphibalanus amphi... [more]
UPI001C3683349.400e-529.19Uncharacterized protein n=3 Tax=Manduca sexta TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106649contigF-distichus_contig106649:1104..1565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.8184617-CDS-F-distichus_contig106649:1103..15651622928993.8184617-CDS-F-distichus_contig106649:1103..1565Fucus distichus monoicousCDSF-distichus_contig106649 1104..1565 -
1690885097.2303176-CDS-F-distichus_contig106649:1103..15651690885097.2303176-CDS-F-distichus_contig106649:1103..1565Fucus distichus monoicousCDSF-distichus_contig106649 1104..1565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106649.568.1prot_F-distichus_contig106649.568.1Fucus distichus monoicouspolypeptideF-distichus_contig106649 1104..1565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106649.568.1

>prot_F-distichus_contig106649.568.1 ID=prot_F-distichus_contig106649.568.1|Name=mRNA_F-distichus_contig106649.568.1|organism=Fucus distichus monoicous|type=polypeptide|length=154bp
LHRIRQEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILG
LFINGVSDLELQQDLLAEQNMTLAKAVTLAVACETAKRSQEVLNTSQQVA
AGISTYKKGLSKIVVPPDCCARCGIKQHSDRRKDCPANDFCFKYGIKGHF
RKLC
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mRNA from alignment at F-distichus_contig106649:1104..1565-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106649.568.1 ID=mRNA_F-distichus_contig106649.568.1|Name=mRNA_F-distichus_contig106649.568.1|organism=Fucus distichus monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at F-distichus_contig106649:1104..1565- (Fucus distichus monoicous)
CTCCATAGAATCAGGCAGGAGCCGGGCCAGCCAGTGCAGAGCTTCCTGGC CAACCTCAAGTCCAAGGCTAGGCAGTGTGACATGAAGCTCGTGTGGAGTA ACATCACCTGCCAGACAGAGAATAGCTACAGCCAACCCGGCATCCTCGGC CTGTTCATCAACGGGGTCAGTGACCTGGAGCTCCAGCAGGACCTCCTTGC CGAGCAGAACATGACCCTGGCCAAAGCTGTCACACTGGCCGTGGCATGCG AGACTGCCAAGAGGTCGCAGGAGGTCCTCAACACCAGCCAGCAGGTGGCT GCGGGCATCTCCACCTACAAGAAGGGCCTGAGCAAGATAGTCGTGCCACC AGACTGCTGCGCCCGCTGTGGCATTAAGCAACATAGTGACCGGAGAAAGG ATTGCCCAGCTAACGACTTTTGTTTTAAATATGGGATTAAGGGACATTTC AGAAAATTATGT
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Coding sequence (CDS) from alignment at F-distichus_contig106649:1104..1565-

>mRNA_F-distichus_contig106649.568.1 ID=mRNA_F-distichus_contig106649.568.1|Name=mRNA_F-distichus_contig106649.568.1|organism=Fucus distichus monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at F-distichus_contig106649:1104..1565- (Fucus distichus monoicous)
CTCCATAGAATCAGGCAGGAGCCGGGCCAGCCAGTGCAGAGCTTCCTGGC
CAACCTCAAGTCCAAGGCTAGGCAGTGTGACATGAAGCTCGTGTGGAGTA
ACATCACCTGCCAGACAGAGAATAGCTACAGCCAACCCGGCATCCTCGGC
CTGTTCATCAACGGGGTCAGTGACCTGGAGCTCCAGCAGGACCTCCTTGC
CGAGCAGAACATGACCCTGGCCAAAGCTGTCACACTGGCCGTGGCATGCG
AGACTGCCAAGAGGTCGCAGGAGGTCCTCAACACCAGCCAGCAGGTGGCT
GCGGGCATCTCCACCTACAAGAAGGGCCTGAGCAAGATAGTCGTGCCACC
AGACTGCTGCGCCCGCTGTGGCATTAAGCAACATAGTGACCGGAGAAAGG
ATTGCCCAGCTAACGACTTTTGTTTTAAATATGGGATTAAGGGACATTTC
AGAAAATTATGTCTCCATAGAATCAGGCAGGAGCCGGGCCAGCCAGTGCA
GAGCTTCCTGGCCAACCTCAAGTCCAAGGCTAGGCAGTGTGACATGAAGC
TCGTGTGGAGTAACATCACCTGCCAGACAGAGAATAGCTACAGCCAACCC
GGCATCCTCGGCCTGTTCATCAACGGGGTCAGTGACCTGGAGCTCCAGCA
GGACCTCCTTGCCGAGCAGAACATGACCCTGGCCAAAGCTGTCACACTGG
CCGTGGCATGCGAGACTGCCAAGAGGTCGCAGGAGGTCCTCAACACCAGC
CAGCAGGTGGCTGCGGGCATCTCCACCTACAAGAAGGGCCTGAGCAAGAT
AGTCGTGCCACCAGACTGCTGCGCCCGCTGTGGCATTAAGCAACATAGTG
ACCGGAGAAAGGATTGCCCAGCTAACGACTTTTGTTTTAAATATGGGATT
AAGGGACATTTCAGAAAATTATGT
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