mRNA_F-distichus_contig106649.568.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A8B6DTV2_MYTGA (RT_RNaseH domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DTV2_MYTGA) HSP 1 Score: 71.2 bits (173), Expect = 1.730e-11 Identity = 57/158 (36.08%), Postives = 79/158 (50.00%), Query Frame = 1
Query: 1 LHRIRQEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQN--MTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTYKKGLSKIVVPPDCCARCGIKQHSDRRK-DCPANDF-CFKYGIKGHFRKLC 462
LH +RQ+ +PV+SF A L+ +A C K TC T+ +Y+ I + G+SD E+Q DLL ++N MTL + A ++ KRS L SQ V A S+YKK +K D G + RK DCPA C + HF K+C
Sbjct: 135 LHNMRQDRDEPVRSFCARLRGQAGVC--KFFIQCPTCNTDVNYTDTIIRDVLARGISDPEIQLDLLGDKNQDMTLEEVTQFVEAKDSGKRSASRLLDSQTVQAASSSYKK--AKQTAVRDKNEGHGKSAPARLRKSDCPAYGHKCGYCNREHHFEKVC 288
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A8B6EW11_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EW11_MYTGA) HSP 1 Score: 63.2 bits (152), Expect = 6.210e-9 Identity = 45/128 (35.16%), Postives = 61/128 (47.66%), Query Frame = 1
Query: 109 CQTENSYSQPGILGLFINGVSDLELQQDLLAEQN--MTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTYKKGLSKIVVPP-DCCARCGIKQHSD------RRKDCPANDF-CFKYGIKGHFRKLC 462
C T+ +Y+ I + G+SD E+Q DLL ++N MTL + A ++ KRS L SQ V A S+YKK V + C CG K H R+ DCPA C + HF K+C
Sbjct: 118 CNTDVNYTDTIIRDVLARGISDPEIQLDLLGDKNQDMTLEEVTQFVEAKDSGKRSASRLLDSQTVQAASSSYKKAKQTAVRDKNEVCTYCGKKGHGKSAPARLRKSDCPAYGHKCGYCNREHHFEKVC 245
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A8B6BPD7_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BPD7_MYTGA) HSP 1 Score: 61.6 bits (148), Expect = 2.490e-8 Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 1
Query: 1 LHRIRQEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQN--MTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTY 318
LH +RQ+ +PV+SF A L+ +A C K TC T +Y+ I + G+SD E+Q DLL ++N MTL + A ++ KRS L SQ V A S+Y
Sbjct: 196 LHNMRQDRDEPVRSFCARLRGQAGVC--KFFIQCPTCNTHVNYTDTIIRDVLARGISDPEIQLDLLGDKNQDMTLEEVTQFVEAKDSGKRSASRLLDSQTVQAASSSY 301
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A6J8D1U7_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8D1U7_MYTCO) HSP 1 Score: 57.0 bits (136), Expect = 1.290e-6 Identity = 48/152 (31.58%), Postives = 69/152 (45.39%), Query Frame = 1
Query: 1 LHRIRQEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQN--MTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTYKKGLSKIVVPPDCCARCGIKQHSDRRKDCPAN---DFCFKYGIK 441
LH + Q+ +PV+SF A L+ +A C K TC T+ + + I + G+SD E+Q DLL ++N MT + A ++ KRS+ L SQ V A S+Y +K D C + K PA C YG K
Sbjct: 135 LHNMHQDRDEPVRSFCARLRGQAGVC--KFFIKCPTCNTDVNNTDTFIRDVLARGISDPEIQLDLLGDKNQDMTFEEVAQFVEAKDSGKRSR--LLDSQMVQAASSSY----AKQTAVRDINEVCSYRDKKGHGKSAPARLRKSDCLAYGHK 278
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: UPI001425577A (uncharacterized protein LOC117106373 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425577A) HSP 1 Score: 56.2 bits (134), Expect = 1.960e-6 Identity = 49/169 (28.99%), Postives = 73/169 (43.20%), Query Frame = 1
Query: 4 HRIRQEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQNMTLAKAVTLAVACETA-------KRSQEVLNTSQQVAAGISTYKKGLSKIVVPPDC-------CARCG-IKQHSDRRKDCPAND-FCFKYGIKGHFRKLC 462
H+ Q G+P+Q++LA L+ A CD + + + + G+++ +Q+ LLAE +TL KAV LAVA + A ++S NT+ + I K + P C CG + H R+ CPA D C KGHF K C
Sbjct: 93 HKRDQHHGEPIQTYLAELRRLAMTCDF------------GNTLEDTLRDRLVCGLNNSHIQKRLLAEDKLTLQKAVELAVAMDAAHKDAIELQKSHNPNNTNGGKSDVIHAAKHKTERFSKKPKAKFSQKSTCRNCGGVYPH--RQAPCPAADKSCHHCSRKGHFAKFC 247
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A8C1NQP4_CYPCA (Ribonuclease H n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1NQP4_CYPCA) HSP 1 Score: 53.5 bits (127), Expect = 2.460e-5 Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 1
Query: 16 QEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQNMTLAKAVTLAVACETAKRSQEVLNT--------SQQVAAGISTYKKGLSKIVVPPDC--CARCGIKQHSDRRKDCPA-NDFCFKYGIKGHFRKLC 462
Q+ G+ SFL +LK KA+ C+ L+ ++ + + G++D ++++ LL E +TL +AV + A E A + + + + VAA K G+SK+ + C RCG K+H K CPA C K + HF K C
Sbjct: 103 QQQGETFDSFLVDLKLKAKTCNFGLLQDSM------------VRDQIVFGINDKKVRERLLRETELTLNEAVRICQASEIAIQHAKTFSEHTKMSGSDNSAVAAVTEKQKSGMSKLKQQKELFNCKRCG-KRHLP--KQCPAYGKVCAKCKGQNHFAKQC 247
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A6A4VT35_AMPAM (Retrovirus-related Pol polyprotein from transposon opus n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VT35_AMPAM) HSP 1 Score: 52.4 bits (124), Expect = 6.070e-5 Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 1
Query: 16 QEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQNMTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTYKKGLS 333
QEPG+ +L LK A+ CD + C+ E + +NG+SD E Q +LAE +TL KA+ + A E+AKR+ VL + A +S Y++G S
Sbjct: 189 QEPGETFDDYLVALKELAQFCDFC-----VHCRDEQFRDR------LVNGISDQESLQAMLAEPELTLEKAIKICRANESAKRNAAVLRPATVQA--MSAYRRGRS 281
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A6J8C7S5_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8C7S5_MYTCO) HSP 1 Score: 52.0 bits (123), Expect = 7.490e-5 Identity = 38/110 (34.55%), Postives = 54/110 (49.09%), Query Frame = 1
Query: 109 CQTENSYSQPGILGLFINGVSDLELQQDLLAEQN--MTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTYKKGLSKIVVPP-DCCARCGIKQHSD------RRKDCPA 411
C T+ +Y+ I + G+S+ E+Q DLL ++N MTL + A ++ KRS L S V A S+YKK V + C+ CG K H R+ DCPA
Sbjct: 202 CNTDVNYTDTIIRDVLARGISNPEIQLDLLGDKNQDMTLEEVTQFVEAKDSWKRSASRLLDSLMVEAVSSSYKKAKQTAVRDKNEVCSYCGKKVHGKSASARLRKSDCPA 311
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: A0A6A4WBW2_AMPAM (Uncharacterized protein n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WBW2_AMPAM) HSP 1 Score: 52.0 bits (123), Expect = 7.540e-5 Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 1
Query: 16 QEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQNMTLAKAVTLAVACETAKRSQEVLNTSQQVAAGISTYKKGLS 333
QEPG+ +L LK A+ CD + C+ E + +NG+SD E Q +LAE +TL KA+ + A E+AKR+ VL + A +S Y++G S
Sbjct: 189 QEPGETFDDYLVALKELAQFCDFC-----VHCRGEQFRDR------LVNGISDQESLQAMLAEPELTLEKAIKICRANESAKRNAAVLRPATVQA--MSAYRRGRS 281
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Match: UPI001C368334 (Uncharacterized protein n=3 Tax=Manduca sexta TaxID=7130 RepID=UPI001C368334) HSP 1 Score: 51.6 bits (122), Expect = 9.400e-5 Identity = 47/161 (29.19%), Postives = 74/161 (45.96%), Query Frame = 1
Query: 13 RQEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGLFINGVSDLELQQDLLAEQNMTLAKAVTLAVACETAKRSQEVL-----NTSQQVAA----GISTYKK-GLSKIVVPPDCCARCGIKQHSDRRKDCPANDF-CFKYGIKGHFRKLC 462
RQ+ G+ V F+A LK +RQC+ K +T N + F+ G++ ++Q L AE +++ + AVTLA++ E A+R + NTSQ ++ Y+ G C+ CGI H R C F C G GH +++C
Sbjct: 99 RQQSGETVSQFVAELKRLSRQCEFK--------ETLND----NLRDQFVCGLTSDVIRQRLFAESDLSYSYAVTLAMSLEAAERDSAAVEGNKANTSQGADGLYDITVANYQHAGSGATKENAGSCSICGIFGHRAMR--CRYKHFKCNDCGKVGHLKRMC 245 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106649.568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig106649.568.1 >prot_F-distichus_contig106649.568.1 ID=prot_F-distichus_contig106649.568.1|Name=mRNA_F-distichus_contig106649.568.1|organism=Fucus distichus monoicous|type=polypeptide|length=154bp LHRIRQEPGQPVQSFLANLKSKARQCDMKLVWSNITCQTENSYSQPGILGback to top mRNA from alignment at F-distichus_contig106649:1104..1565- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig106649.568.1 ID=mRNA_F-distichus_contig106649.568.1|Name=mRNA_F-distichus_contig106649.568.1|organism=Fucus distichus monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at F-distichus_contig106649:1104..1565- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig106649:1104..1565- >mRNA_F-distichus_contig106649.568.1 ID=mRNA_F-distichus_contig106649.568.1|Name=mRNA_F-distichus_contig106649.568.1|organism=Fucus distichus monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at F-distichus_contig106649:1104..1565- (Fucus distichus monoicous)back to top |