mRNA_F-distichus_contig10660.563.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10660.563.1
Unique NamemRNA_F-distichus_contig10660.563.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10660.563.1 vs. uniprot
Match: D8LSA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSA7_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 1.380e-105
Identity = 152/182 (83.52%), Postives = 173/182 (95.05%), Query Frame = 1
Query:  178 RLFEEILTEQHAAPITGVLIIQRESVVHLVETSMDTSTAFLRQIQSMQANPEPSSRVMENVKILISSEDCPSPFFTKWFHYDLQLNEENNVDINNEDPIEASWGVHDKLVELASEMRQHSGTSVSELKRKYNHLVPSNERVLGLAESENVMSLSEYLHVYDTPISATLESERVWPIPALIRY 723
            ++FEEIL+EQHAA ITGVLI+Q+ES++HLVETSMDTSTA LRQIQSM+A+ +PS+RVMENVKIL+SSEDCP+P+F KWFHY++QLN E+NVDI+ EDP+EASWGV+DKLVELASEMRQHSGTSVSELKRKYNHLVPSNERVLGLAE+E  MSLSEYL VYDTPISATLESERVWPIPALIRY
Sbjct:    5 QVFEEILSEQHAATITGVLIVQKESIIHLVETSMDTSTALLRQIQSMEADLDPSARVMENVKILVSSEDCPAPYFAKWFHYNIQLNAESNVDIDKEDPVEASWGVYDKLVELASEMRQHSGTSVSELKRKYNHLVPSNERVLGLAETEKNMSLSEYLQVYDTPISATLESERVWPIPALIRY 186          
BLAST of mRNA_F-distichus_contig10660.563.1 vs. uniprot
Match: A0A835YNJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNJ4_9STRA)

HSP 1 Score: 204 bits (519), Expect = 2.040e-62
Identity = 98/197 (49.75%), Postives = 133/197 (67.51%), Query Frame = 1
Query:  148 DPDEIVRYHERLFEEILTEQHAAPITGVLIIQRESVVHLVETSMDTSTAFLRQIQSM-----QANPEPSSRVMENVKILISSEDCPSPFFTKWFHYDLQLNEENNVDINNEDPIEASWGVHDKLVELASEMRQHSGTSVSELKRKYNHLVPSNERVLGLAESENVMSLSEYLHVYDTPISATLESERVWPIPALIRY 723
            D   +V+ HER+F+ +L E+HAAPITGVLI Q++S +HL+ETSMDT+T+FLR +Q+                +   ++L + EDCP P+F KWFHY +QL  +  VD+  EDP+EA+WGV D+L ELA+E+    G S S+LKR+Y HLV SNER   LA ++  M + EYL +YDTPI A LE ERVWP   ++RY
Sbjct:    6 DSAAVVQLHERIFDAVLAEEHAAPITGVLITQKDSTLHLIETSMDTATSFLRHLQARGXXXXXXXXXXXXXXIGAARLLAACEDCPCPYFAKWFHYHVQLMPDAGVDVEREDPVEAAWGVLDRLAELAAEVAAAGGASSSDLKRRYAHLVASNERCAALARADAFMPIGEYLDLYDTPIDAALEGERVWPAQQVVRY 202          
BLAST of mRNA_F-distichus_contig10660.563.1 vs. uniprot
Match: A0A6J8DNX3_MYTCO (BLUF domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DNX3_MYTCO)

HSP 1 Score: 88.6 bits (218), Expect = 3.340e-17
Identity = 67/235 (28.51%), Postives = 119/235 (50.64%), Query Frame = 1
Query:   46 TSYLDHLDARLDMQGGRASLARLLLVATKGKGADDPDEIVRYHERLFEEILTEQHAAP---ITGVLIIQRESVVHLVETSMDTSTAFLRQ-IQSMQANPEPSSRVMENVKILISSEDCPSPFFTKWFHYDLQLNEENNVDINNEDPIEASWG-VHDKLVEL-------ASEMRQHSGTSVSELKRKYNHLVPSNERVLGLAESEN--VMSLSEYLHVYDTPISATLESERVWPIP 708
            TS L+ ++ R      +  L R++ +A+      D D+I  YHE L + + + Q  +    ITG+L++  + +VH+VET+    T  LR+ I+  + N E S+ +   VKIL+ S D P   +  W    L++    +  +++ D  E++   V D L++L       A   + +   S  +L  K   L+P    +  L E ++  +M++ EYL++Y+ P    L+SE VWP+P
Sbjct:   15 TSLLELIEDRNKALNKKNLLHRMVYIASLRNEDADSDQIANYHENLKKNLESAQQYSEHVSITGLLLVYTKHIVHIVETT----TEMLREVIKDSKKNMESSNGIFSQVKILVVSHDIPERLYQNWMFKTLEI---QSARLDSYDSSESTDKIVLDCLIQLLKLGNHVAKIPKGNFKNSFDQLHSKVPDLLPQQAMLHFLLEEDDCSMMTVKEYLNMYEQPYDVVLDSELVWPLP 242          
BLAST of mRNA_F-distichus_contig10660.563.1 vs. uniprot
Match: A0A151NXF5_ALLMI (Uncharacterized protein n=2 Tax=Crocodylia TaxID=1294634 RepID=A0A151NXF5_ALLMI)

HSP 1 Score: 86.3 bits (212), Expect = 2.540e-16
Identity = 65/229 (28.38%), Postives = 114/229 (49.78%), Query Frame = 1
Query:   40 LPTS-YLDHLDARLDMQGGRASLARLLLVATKGKGADDPDEIVRYHERLFEEILTEQHAAPITGVLIIQRESVVHLVETSMDTSTAFLRQIQSMQANPEPSSRVMENVKILISSEDCPSPFFTKWFHYDLQLNEENNVDIN-NEDPIEASWGVHDKLVELASEMRQHSGTSVSELKRKYNHLVPS----NERVLGLAESENVMSLSEYLHVYDTPISATLESERVWPIP 708
            LP S  L  L+ R   Q  +  L RL  VA   +GAD   E+  YHERLF+ IL      P++G+L++   S++H+VE+S  T    L  + S+++  +  S +++ +KIL+ S + P+  F +W+   +        D+  ++   E        L++L + + +    S   L    + LVP+     E +  L  +++ +S  E+L +Y  P+   ++SE VWP P
Sbjct:   23 LPRSTLLGALEERRRAQLKKFLLHRLFFVARLPEGADG-GEVTGYHERLFQNILKYHLGEPVSGLLLLYPNSILHIVESSSGTIYRILHDLASLRS--QGPSALLQEIKILVVSHNIPTKLFLQWYVTMVTPPVTYLEDVTQSQSTEEVVTECLTLLLKLGAYISKTFKVSSKALGNNLHTLVPNLLIPAETINYLCNAKDCLSPEEFLKMYKDPLQPAMDSETVWPTP 248          
BLAST of mRNA_F-distichus_contig10660.563.1 vs. uniprot
Match: A0A3Q0H0Q7_ALLSI (LOW QUALITY PROTEIN: testis-expressed protein 47 n=2 Tax=Crocodylia TaxID=1294634 RepID=A0A3Q0H0Q7_ALLSI)

HSP 1 Score: 78.6 bits (192), Expect = 5.760e-14
Identity = 56/192 (29.17%), Postives = 97/192 (50.52%), Query Frame = 1
Query:  157 EIVRYHERLFEEILTEQHAAPITGVLIIQRESVVHLVETSMDTSTAFLRQIQSMQANPEPSSRVMENVKILISSEDCPSPFFTKWFHYDLQLNEENNVDINNEDPIEASWGVHDKLVELASEMRQHS--GTSVSE--LKRKYNHLVPS----NERVLGLAESENVMSLSEYLHVYDTPISATLESERVWPIP 708
            E+  YHERLF+ IL      P++G+L++   SV+H+VE+S  T    L  + S+Q+  +  S +++ +KIL+ S + P+  F +W+   + L      D+      E    V  + + L   +  +S   T VS   L    + LVP+     E +  L  +++ +S  E+L +Y  P+   ++SE VWP P
Sbjct:    3 EVTGYHERLFQNILKYHLGEPVSGLLLLYPNSVLHIVESSSGTIYRILHDLASLQS--QGPSALLQEIKILVVSHNIPTKLFLQWYVTMVTLPVTYLEDVTQSQSTEE---VVTECLTLLLWIXWYSLFTTKVSSKSLGNNLHTLVPNLLIPAETINYLCNAKDCLSPEEFLKMYKDPLQPAMDSETVWPTP 189          
BLAST of mRNA_F-distichus_contig10660.563.1 vs. uniprot
Match: UPI001CF7C37C (testis-expressed protein 47 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=UPI001CF7C37C)

HSP 1 Score: 72.8 bits (177), Expect = 2.850e-11
Identity = 57/219 (26.03%), Postives = 110/219 (50.23%), Query Frame = 1
Query:   70 ARLDMQGGRASLARLLLVATKGKGADDPDEIVRYHERLFEEILTEQHAAP-ITGVLIIQRESVVHLVETSMDTSTAFLRQIQSMQANPEPSSRVME-NVKILISSEDCPSPFFTKWFHYDLQL-NEENNVDINNEDPIEAS-WGVHDKLVELASEMRQHSGTSVS---ELKRKYNHLVPSNERVLGLAESENVMSLSEYLHVYDTPISATLESERVWPI 705
            AR    G ++ L RL+ +A       D  ++  Y E+LF  + +  +    +TG+L++    VVH++E S D   + LR ++ +    E   RV+  + KILI S + P   F +W +  L +   +   D+ +E+P EA        L++L   ++++  +  +    +  K   L+     +  L E + ++S +EYLH++D+P+  + +SE +WP+
Sbjct:   53 ARQRENGKKSLLHRLIFLAKISPDLADKRDLAAYWEQLFTSLPSCGYQGEGVTGLLLLYPTYVVHILEASSDVLYSILRDLRDV----EQQQRVLILDAKILIMSHNLPIRLFQQWNYKVLNMPGTQLGYDMPHEEPAEAIVCECLAVLLKLGMHLQKYPKSPKNLPDTILEKVPELIVPQGTICYLLECQELLSPAEYLHLFDSPVDISTDSEIMWPL 267          
BLAST of mRNA_F-distichus_contig10660.563.1 vs. uniprot
Match: A0A507D5V2_9FUNG (Uncharacterized protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507D5V2_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 5.710e-11
Identity = 63/248 (25.40%), Postives = 111/248 (44.76%), Query Frame = 1
Query:   49 SYLDHLDARLDMQGGRASLARLLLVATKGKGADDPDEIVRYHERLFEEILTEQHA----------------APITGVLIIQRESVVHLVETSMDTSTAFLRQIQS---MQANPEPSSRVMENVKILISSEDCPSPFFTKWFH--YDLQLNEENNVD---INNEDPIEASWGVHDKLVELASEM----RQHSGTSVSELKRKYNHLVPSNERVLGLAESENVMSLSEYLHVYDTPISATLESERVWPIP 708
            S LD++    +++  +A++ R ++      G D   E+  Y +R    +  + H                   ITG+L+IQ  S +H++E+S  T+   +  + S     + P  SS V    K+L++ ED  + FF  W     D   + E +VD   + +++ ++    V   L+ L S +    +     +V E+  KY    P N  V  LA S+NV  LSE++     P++  LE + V+P P
Sbjct:   19 SVLDYIRESTNIR--KATVYRAMICGELAPGGDR-SELAAYFQRFIRHLQQQHHQHQNSSDASGPSDIGQHGSITGLLLIQPTSYLHVIESSTKTTVNVMTDLLSPHKSDSEPNLSSLVQGKPKLLLAQEDALARFFPTWSSKILDPPASREKDVDPDSLGSQEILKTISEVCVNLLSLGSSLSSLPKSDVRQAVDEILEKYGEYTPRNTLVTALAASDNVTYLSEWVEAMG-PVNLKLEGDLVYPAP 262          
BLAST of mRNA_F-distichus_contig10660.563.1 vs. uniprot
Match: A0A1S8VQP3_9FUNG (Uncharacterized protein n=3 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VQP3_9FUNG)

HSP 1 Score: 72.0 bits (175), Expect = 6.300e-11
Identity = 68/265 (25.66%), Postives = 120/265 (45.28%), Query Frame = 1
Query:    7 LSIPTTGCMMSLPT----SYLDHLDARLDMQGGRASLARLLLVATKGKGADDPDEIVRYHERLFEEILTEQHAAPITGVLIIQRESVVHLVETSMDTSTAFLRQIQSM-QANPEPSSR----------------VMENVKILISSEDCPSPFFTKWFHYDLQLNEENNVDINNEDPIEASWGVHDKLVE-----LASEMRQHSGTSVSELKR-------KYNHLVPSNERVLGLAESENVMSLSEYLHVYDTPISATLESERVWP 702
            +S   TG M+ LP     +YLD +  R   +    +   +++V    K  D   E   Y++R F+   +E     ITGVL+I RES VH++E +     + +R I ++ Q  P+  S                 +M N +IL  +++    F+  W    + L E ++ +I+    + +S    DKL+      L +  +Q S    SELK        ++   +P    +  LA  ++++S+ E+L  +D  ++ T ESE +WP
Sbjct:   38 ISTGNTGVMLPLPEETRLNYLDIIRERFKDENKMPTTCIVVIVGEISKDLDRA-EFSTYYQRFFKRQQSESEL--ITGVLLIYRESFVHVLEATQKVVYSLIRDIGALPQYVPKVDSSTLSTDKKGIGHITSRPMMFNTRILTFTDNNYERFYPFWASKVIDLKENSSYEIDMS--LFSSESSLDKLISDTCIGLITIGKQLSTLQKSELKHVFEDITDRFKEYIPHQNLLTELAACQDIISVGEWLECFDNHVTLTQESEIIWP 297          
BLAST of mRNA_F-distichus_contig10660.563.1 vs. uniprot
Match: UPI00046BCCED (testis-expressed protein 47 n=1 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00046BCCED)

HSP 1 Score: 69.3 bits (168), Expect = 3.290e-10
Identity = 56/235 (23.83%), Postives = 110/235 (46.81%), Query Frame = 1
Query:   40 LPTSYLDHLDARLDMQGGRASLARLLLVATKGKGADDPDEIVRYHERLFEEILTEQHAAPITGVLIIQRESVVHLVETSMDTSTAFLRQIQSMQANPEPSSRVMENVKILISSEDCPSPFFTKWFHYDLQLNEENNVDINNEDPIEASWGVHDKLVELASEMRQHSGTSVSELK-----RKYNHLVPSNERVLG------LAESENVMSLSEYLHVYDTPISATLESERVWPIPA 711
            L  +YL  L+ +  +Q  +  L R+ LVA K K   +  ++  Y+E+LF+ I     +  +TG+L+I R  ++H++E+S  T    L     +    +  +  ++ +KI++ S + P+  F +W    ++      V +   D +  S  + + + E  ++  + +      LK        N   P+ E +L       L ESE  +    ++++Y+ PI  T ++E VWP P+
Sbjct:   26 LRNNYLHFLEEKQKLQLKKFLLDRMFLVA-KTKDNVEKKDVTEYYEQLFQSIAKPYASEAVTGLLLIYRTFILHILESSSGTLYRILSDY--INHKKKGGNYFIQGMKIIVMSHNIPTRIFMQWHVIVIK------VPVMYLDDVTQSQSLREVITEFLTQTHKLALYFFKTLKVGAKGPSENLHQPAPELLLPEQIIKYLYESEEFIDPETFINMYNRPIHITFDTEVVWPAPS 251          
BLAST of mRNA_F-distichus_contig10660.563.1 vs. uniprot
Match: G1P7S8_MYOLU (Testis expressed 47 n=5 Tax=Myotis TaxID=9434 RepID=G1P7S8_MYOLU)

HSP 1 Score: 67.8 bits (164), Expect = 1.150e-9
Identity = 52/232 (22.41%), Postives = 105/232 (45.26%), Query Frame = 1
Query:   49 SYLDHLDARLDMQGGRASLARLLLVATKGKGADDPDEIVRYHERLFEEILTEQHAAPITGVLIIQRESVVHLVETSMDTSTAFLRQIQSMQANPEPSSRVMENVKILISSEDCPSPFFTKWFHYDLQLNEENNVDINNEDPIEASWGVHDKLVELASEMRQHSGTSVSELK-----------RKYNHLVPSNERVLGLAESENVMSLSEYLHVYDTPISATLESERVWPIPA 711
            +YL   + +  +Q  +  L R+ LVA      +  D +  Y+E++F+ I       P+TG+L++ R  +VH++E+S  T    L    + + N       ++ +KI++ S + P+  F +W    ++      V +   D +  S  + + + E  ++  + +      LK           +    L+   + +  L  SE  M    ++++Y+ PI  TL++E VWP P+
Sbjct:   29 NYLHFQEEKQRLQLKKFLLDRMFLVAMTRDNIEKKD-VTEYYEQVFQSIAKPHIGEPVTGLLLMYRTFIVHILESSSGTLYRILLDYINHRKNR--GEYFIQGMKIIVVSHNIPTRIFMQWHVVVIK------VPVMYLDDVTQSQSLEEVITEFLTQTHKLALYFFKTLKVGVKGPGESLHQPAPELLLQEQIIKYLYRSEEFMEPETFINMYNRPIHVTLDTEVVWPAPS 251          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10660.563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LSA7_ECTSI1.380e-10583.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YNJ4_9STRA2.040e-6249.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6J8DNX3_MYTCO3.340e-1728.51BLUF domain-containing protein n=1 Tax=Mytilus cor... [more]
A0A151NXF5_ALLMI2.540e-1628.38Uncharacterized protein n=2 Tax=Crocodylia TaxID=1... [more]
A0A3Q0H0Q7_ALLSI5.760e-1429.17LOW QUALITY PROTEIN: testis-expressed protein 47 n... [more]
UPI001CF7C37C2.850e-1126.03testis-expressed protein 47 n=1 Tax=Varanus komodo... [more]
A0A507D5V2_9FUNG5.710e-1125.40Uncharacterized protein n=2 Tax=Synchytrium endobi... [more]
A0A1S8VQP3_9FUNG6.300e-1125.66Uncharacterized protein n=3 Tax=Batrachochytrium s... [more]
UPI00046BCCED3.290e-1023.83testis-expressed protein 47 n=1 Tax=Eptesicus fusc... [more]
G1P7S8_MYOLU1.150e-922.41Testis expressed 47 n=5 Tax=Myotis TaxID=9434 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10660contigF-distichus_contig10660:2..3879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score87.0
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog8496.XP_006268505.1
Preferred nameC7orf62
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chromosome 7 open reading frame 62
EggNOG OGs2AACK@1,2RYKR@2759,3A1DR@33154,3BQ48@33208,3D3YY@33213,482IB@7711,494TE@7742
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004220.1
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons5
Model size829
Cds size696
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.173234-UTR-F-distichus_contig10660:1..1041622928993.173234-UTR-F-distichus_contig10660:1..104Fucus distichus monoicousUTRF-distichus_contig10660 2..104 -
1690885096.7592516-UTR-F-distichus_contig10660:1..1041690885096.7592516-UTR-F-distichus_contig10660:1..104Fucus distichus monoicousUTRF-distichus_contig10660 2..104 -
1622928993.3252294-UTR-F-distichus_contig10660:3849..38791622928993.3252294-UTR-F-distichus_contig10660:3849..3879Fucus distichus monoicousUTRF-distichus_contig10660 3850..3879 -
1690885096.8955164-UTR-F-distichus_contig10660:3849..38791690885096.8955164-UTR-F-distichus_contig10660:3849..3879Fucus distichus monoicousUTRF-distichus_contig10660 3850..3879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.195378-CDS-F-distichus_contig10660:104..1881622928993.195378-CDS-F-distichus_contig10660:104..188Fucus distichus monoicousCDSF-distichus_contig10660 105..188 -
1690885096.8380857-CDS-F-distichus_contig10660:104..1881690885096.8380857-CDS-F-distichus_contig10660:104..188Fucus distichus monoicousCDSF-distichus_contig10660 105..188 -
1622928993.213705-CDS-F-distichus_contig10660:531..6761622928993.213705-CDS-F-distichus_contig10660:531..676Fucus distichus monoicousCDSF-distichus_contig10660 532..676 -
1690885096.8483176-CDS-F-distichus_contig10660:531..6761690885096.8483176-CDS-F-distichus_contig10660:531..676Fucus distichus monoicousCDSF-distichus_contig10660 532..676 -
1622928993.22853-CDS-F-distichus_contig10660:1588..17281622928993.22853-CDS-F-distichus_contig10660:1588..1728Fucus distichus monoicousCDSF-distichus_contig10660 1589..1728 -
1690885096.8568268-CDS-F-distichus_contig10660:1588..17281690885096.8568268-CDS-F-distichus_contig10660:1588..1728Fucus distichus monoicousCDSF-distichus_contig10660 1589..1728 -
1622928993.2427034-CDS-F-distichus_contig10660:2047..22241622928993.2427034-CDS-F-distichus_contig10660:2047..2224Fucus distichus monoicousCDSF-distichus_contig10660 2048..2224 -
1690885096.8726661-CDS-F-distichus_contig10660:2047..22241690885096.8726661-CDS-F-distichus_contig10660:2047..2224Fucus distichus monoicousCDSF-distichus_contig10660 2048..2224 -
1622928993.3073275-CDS-F-distichus_contig10660:3699..38491622928993.3073275-CDS-F-distichus_contig10660:3699..3849Fucus distichus monoicousCDSF-distichus_contig10660 3700..3849 -
1690885096.8824027-CDS-F-distichus_contig10660:3699..38491690885096.8824027-CDS-F-distichus_contig10660:3699..3849Fucus distichus monoicousCDSF-distichus_contig10660 3700..3849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10660.563.1prot_F-distichus_contig10660.563.1Fucus distichus monoicouspolypeptideF-distichus_contig10660 105..3849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10660.563.1

>prot_F-distichus_contig10660.563.1 ID=prot_F-distichus_contig10660.563.1|Name=mRNA_F-distichus_contig10660.563.1|organism=Fucus distichus monoicous|type=polypeptide|length=232bp
MMSLPTSYLDHLDARLDMQGGRASLARLLLVATKGKGADDPDEIVRYHER
LFEEILTEQHAAPITGVLIIQRESVVHLVETSMDTSTAFLRQIQSMQANP
EPSSRVMENVKILISSEDCPSPFFTKWFHYDLQLNEENNVDINNEDPIEA
SWGVHDKLVELASEMRQHSGTSVSELKRKYNHLVPSNERVLGLAESENVM
SLSEYLHVYDTPISATLESERVWPIPALIRY*
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mRNA from alignment at F-distichus_contig10660:2..3879-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10660.563.1 ID=mRNA_F-distichus_contig10660.563.1|Name=mRNA_F-distichus_contig10660.563.1|organism=Fucus distichus monoicous|type=mRNA|length=3878bp|location=Sequence derived from alignment at F-distichus_contig10660:2..3879- (Fucus distichus monoicous)
GATCTTCTGAGCATCCCAACAACAGGTTGCATGATGAGCTTACCTACAAG CTATCTCGATCACCTCGATGCTCGCCTGGATATGCAGGGTGGGCGTGCCA GCCTTGCGCGACTGCTGCTCGTGGCGACGAAGGGAAAGGGAGCTGATGAT CCGGATGAGATCGTCAGGTATCACGAGCGGGTAAGAACTGCCAACGAACA AGACGGCCACCTGTTGTGCTCGCCTACAAGTCGTGGTAAAGTTTTCTTTG CTATGCGTAACCAATGACTCAGTGGCACAGTCGAAGCGGCCCCGACGGCA TACGCCTCGCTCGAAATGTGACACTCAACGCACCTCAAACTCGAACACGG ATCCCGTCACGGCTGTAGACAAGTCACCCTCAAAGCTTTGCCATCTGAAT AATTGTCTTGATCCCCCGACTCCTGACTGCTCGAAGCAGACGTTGAGGGG TGAATATGTTTTCACATGAGGAAATATGTTGGACTTTGAGCTTAAGCGAT TGGTCCGATGCCCCACCTGAATATTGCGAGAAGAAGTCGATATTTAACTG CGCTGTGCCGGCAAACGATAGCAAAGTAGTTGAGGCCCGATCTAGAAGAC ATAACAAAAATCTAGCTTCCAAATTTCACTCCAAAGTTTTGGAAAGTTTG GAGAAAAAGGTAGATACGACGTCGTCTTGTGGCCTAGTTGGAGTCGTTTT CCAACATGTTCACACTTCTTAAAGCTACCTGTCTACCACGGGCTCCACCG AGTTTCAGCCCGCGTCTTGGCTTGTGGCTGAGGTTTCGTCGATCATGCAT GAAGGCCTACCCTAAGAAATTGAGAAAAATGAGATGCTTGTGGTTGTGCC GCTCGACCTCCAACCACGCTGCTGCAGTAAACCTCTTTGCTATGAGGCTG TCGACGACAAAAAAAAATCGGGCGAGGTAGATATAACAGGCAGAAAACAA ATCCGAAAGCGAGTTTTAGACATCGAAGCAACGTGTGGCCGCCATGGAGT TAGTCCATGTAAAATGGGGCTGGCTTCAAACAGATCAGAACTGACCCCAG CAAGCGCATTTCCCCTAGTTGGACATTCCAAAAGTTTGAGAATGGACAGC AGCGAAAAAATCTAGTTTTTAAACAGTCTGTTCCAGAGTTTGAAAAGTTT GGAGGGGTTTGTGCGGACTTTTCCGTTCATTTCCAACGTTTTGGCCAAGT TTTGGAAAGTATTTGGCCTATTTAAACCTGGCCGCAAGGATACACTAATC TAAGCAGTAGGTCGTGGTAAGCGGCGGGCAATAAGAACACACACAACTTA CATGGTACCGTGTACAGTATAGCGTCATTATCCGTCTCAGTCTGATATCC TGTCGCGTCGCTAAAGAAGACCTGCCCGCTTGCGGCCGAGCCACAGAGCT ACGTCTCTGCTTCCTACGAGAATGAATGTCGCTGCCGCTGTCAGCCATGA CTTCGGTACAGTACCGCCGAGGCTGCTTACTGCATTCATGGATAATGGGA CGCCCTTATTTCCAAGGTTTTTGGATGGCGATAAGAGGCACGCGTAGACG CGGCTGTTTCTCCTCCAGTAGTTACACGATGAAACTTGCCAAAAGTCGTA TGATCTTCCAGCAACATATATTTCCTTCCCGATCTCTGTTTGCGTCGTCT TAAAGTTGTTCGAGGAGATACTGACGGAGCAGCATGCCGCGCCGATCACG GGGGTGCTGATCATCCAGAGGGAGAGCGTAGTCCATCTCGTGGAAACTTC AATGGACACGTCAACGGCCTTCTTACGACAGATTCAAAGCATGCAGGCAA ACCCGGAGCCCTCGTCACGGGTGATGGAAAACGTGCGTATGATAGCGAAA TTAGTTTTTAGTTCAAGTTAACTCTCTCATATATTCTGCGTGCGACATAT TCACGAGGAGTATGTTCGCTGCTCGCACATTTCTGTGTGCCGTTTAATCA TGAAAGTTACTTCTTAGCGAAGTTGACGTCCTCGTCGCAGTGTAGCTTAA GAACCCTCTCAATATTGCCACTCAACAACATTCTACCAGGTCGCGAATAG TCGGTGTTCTATTTATTTTCCTCGTCATATTCCGTCCCTCGCTTGCGAGG GGAACATATTTTTCGAAGCTGCGACACCCCGCTACTCCCCTTGTATCACA GGTCAAGATACTGATATCGAGTGAGGATTGCCCCTCTCCGTTCTTTACGA AATGGTTTCACTACGACTTGCAGCTTAACGAAGAAAATAATGTCGACATC AACAACGAAGATCCGATCGAGGCATCGTGGGGAGTTCACGAGTGAGTCAG GGATTTAGGATTCCCCAATCCATTTCTGCCTGTCAGACGGCGATGTACAG CGAGCGGGATGGTTTCCATTTGCGAGAGAGCTCAAGGCATGGACCAAAAA TAGAACCCTTTAAGTAACATTTTTTTTGTCAGTGCAATGCAACAGGGTTG TTTATGAAAAAACTGAACGCATTCAAACCAGGCTTTCCGTTAGTAGAAAC TATGTGAAAACGCTTGGTCGGGAATATTGGCTGTTAGCACGAAAACTCTC CATGAAATTCGGTTGGATTCCTCGATGATCGCCGCACAGGGTCGACGGAA AGTATCGAGGGAAAACCCACTGTCATACTGTACACTTATTACATTATCGC TATGATGTAGGGATGCAACAGAACAGAGAGGACGCAAAGCAGGACCCACC AAGTTGTTTTCGGTACTCCTATTAGTAACAGTTTCATTACATGCAATTGC ATATTGGAACCGTTTGATAGTACAGGGTGCATCACGGAGGACAACCACTA TTATACTACTCAAGTCTTGAACATAACACAGTAGTAGACACCAGAAACCG ATATTCACCTGTGAAGTAGCCGTATGGTATCGCAGCGAAGGAGCGCCACA CGTGGACCGATCTTGTCGGAGTTTTATGTACGGCGCCGTTTTCCGTACGT AACTTGATTATTCCTGAAGATCGCACCACCTACATATAACAATGGGGTGG GGCATGGCTCATCGGGTGTCCTACTTAACGTTGGAATCGGTAGGTTCCAT TATTCACATACCCGAGTGATGGCTGTTACGCAGTCATTGTGGAGGAAGGA GCACCCATACTCGAGTATTTCCGACAAAAAGGAAGGGGCATTGAAGAAAT CGTCAGTAGAAGCGTCCTCAACGCCCCAATCCCCACCCGGACTGATGTTG CAGCAAGCTAGTGGAGCTAGCGTCAGAGATGCGTCAACATTCAGGCACGT CGGTATCCGAGTTGAAGCGTAAGTACAACCATCTTGTCCCGTCGAACGAG CGAGTGCTGGGACTGGCAGAATCAGAGAACGTCATGAGCTTGTCCGAGGT GAGGGTTGTCCCTTGATTAGGTGCAGCCTAGGTCTTTCTCTAGAAAGTTT ACACCGGAAGTACCCTCGCATCCACGCTTGATCGTTTACTCGGCCACTCT TCCGGAAGGTGGGACATTGAGAAACAATTTCCCGCGCTTTATAATTATTT CAAGCGTTTTTCAGCTCATGACGATCCCATACCCCACGGAGACCAAATGA CTGATTGAATGGAATGGTCTACAGTTTTGATGCCTTGCACTCAAACTTAC GAACAATCATACGGTTCTGTCGATGATCCGAAATCCCTGATCAAATTGGC AATTCCCGTCACCACTTTTCGTTGCCTTACCCCCTCTGAAGTACCTCCAC GTGTACGACACGCCAATTTCAGCCACGCTGGAGTCGGAACGCGTGTGGCC GATCCCGGCTCTTATACGGTATTGACATCGCGGGGATCTCGGAGTTGCAC GACCGGCTTTGTTTTTGATGAAAGCTAGCCCAGAAAAAGTAGCATGTACA ATTATTATAGGTACTTTTCTCGAGCTGA
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Coding sequence (CDS) from alignment at F-distichus_contig10660:2..3879-

>mRNA_F-distichus_contig10660.563.1 ID=mRNA_F-distichus_contig10660.563.1|Name=mRNA_F-distichus_contig10660.563.1|organism=Fucus distichus monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at F-distichus_contig10660:2..3879- (Fucus distichus monoicous)
ATGATGAGCTTACCTACAAGCTATCTCGATCACCTCGATGCTCGCCTGGA
TATGCAGGGTGGGCGTGCCAGCCTTGCGCGACTGCTGCTCGTGGCGACGA
AGGGAAAGGGAGCTGATGATCCGGATGAGATCGTCAGGTATCACGAGCGG
ATGATGAGCTTACCTACAAGCTATCTCGATCACCTCGATGCTCGCCTGGA
TATGCAGGGTGGGCGTGCCAGCCTTGCGCGACTGCTGCTCGTGGCGACGA
AGGGAAAGGGAGCTGATGATCCGGATGAGATCGTCAGGTATCACGAGCGG
TTGTTCGAGGAGATACTGACGGAGCAGCATGCCGCGCCGATCACGGGGGT
GCTGATCATCCAGAGGGAGAGCGTAGTCCATCTCGTGGAAACTTCAATGG
ACACGTCAACGGCCTTCTTACGACAGATTCAAAGCATGCAGGCAAACCCG
GAGCCCTCGTCACGGGTGATGGAAAACTTGTTCGAGGAGATACTGACGGA
GCAGCATGCCGCGCCGATCACGGGGGTGCTGATCATCCAGAGGGAGAGCG
TAGTCCATCTCGTGGAAACTTCAATGGACACGTCAACGGCCTTCTTACGA
CAGATTCAAAGCATGCAGGCAAACCCGGAGCCCTCGTCACGGGTGATGGA
AAACGTCAAGATACTGATATCGAGTGAGGATTGCCCCTCTCCGTTCTTTA
CGAAATGGTTTCACTACGACTTGCAGCTTAACGAAGAAAATAATGTCGAC
ATCAACAACGAAGATCCGATCGAGGCATCGTGGGGAGTTCACGAGTCAAG
ATACTGATATCGAGTGAGGATTGCCCCTCTCCGTTCTTTACGAAATGGTT
TCACTACGACTTGCAGCTTAACGAAGAAAATAATGTCGACATCAACAACG
AAGATCCGATCGAGGCATCGTGGGGAGTTCACGACAAGCTAGTGGAGCTA
GCGTCAGAGATGCGTCAACATTCAGGCACGTCGGTATCCGAGTTGAAGCG
TAAGTACAACCATCTTGTCCCGTCGAACGAGCGAGTGCTGGGACTGGCAG
AATCAGAGAACGTCATGAGCTTGTCCGAGCAAGCTAGTGGAGCTAGCGTC
AGAGATGCGTCAACATTCAGGCACGTCGGTATCCGAGTTGAAGCGTAAGT
ACAACCATCTTGTCCCGTCGAACGAGCGAGTGCTGGGACTGGCAGAATCA
GAGAACGTCATGAGCTTGTCCGAGTACCTCCACGTGTACGACACGCCAAT
TTCAGCCACGCTGGAGTCGGAACGCGTGTGGCCGATCCCGGCTCTTATAC
GGTATTGATACCTCCACGTGTACGACACGCCAATTTCAGCCACGCTGGAG
TCGGAACGCGTGTGGCCGATCCCGGCTCTTATACGGTATTGA
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