mRNA_F-distichus_contig1066.562.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1066.562.1
Unique NamemRNA_F-distichus_contig1066.562.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1066.562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1066contigF-distichus_contig1066:14262..14775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size514
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1066.562.1prot_F-distichus_contig1066.562.1Fucus distichus monoicouspolypeptideF-distichus_contig1066 14282..14491 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.0465958-UTR-F-distichus_contig1066:14261..142811622928993.0465958-UTR-F-distichus_contig1066:14261..14281Fucus distichus monoicousUTRF-distichus_contig1066 14262..14281 +
1690885096.7292461-UTR-F-distichus_contig1066:14261..142811690885096.7292461-UTR-F-distichus_contig1066:14261..14281Fucus distichus monoicousUTRF-distichus_contig1066 14262..14281 +
1622928993.1302884-UTR-F-distichus_contig1066:14491..147751622928993.1302884-UTR-F-distichus_contig1066:14491..14775Fucus distichus monoicousUTRF-distichus_contig1066 14492..14775 +
1690885096.749508-UTR-F-distichus_contig1066:14491..147751690885096.749508-UTR-F-distichus_contig1066:14491..14775Fucus distichus monoicousUTRF-distichus_contig1066 14492..14775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.1178384-CDS-F-distichus_contig1066:14281..144911622928993.1178384-CDS-F-distichus_contig1066:14281..14491Fucus distichus monoicousCDSF-distichus_contig1066 14282..14491 +
1690885096.737964-CDS-F-distichus_contig1066:14281..144911690885096.737964-CDS-F-distichus_contig1066:14281..14491Fucus distichus monoicousCDSF-distichus_contig1066 14282..14491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1066.562.1

>prot_F-distichus_contig1066.562.1 ID=prot_F-distichus_contig1066.562.1|Name=mRNA_F-distichus_contig1066.562.1|organism=Fucus distichus monoicous|type=polypeptide|length=70bp
MDLANFMGLNASLEQVQEVQDRHRSNSSHGSFETYGLPRETIEFENETMI
RLLPQEMLARYGLSLNYVN*
back to top

mRNA from alignment at F-distichus_contig1066:14262..14775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1066.562.1 ID=mRNA_F-distichus_contig1066.562.1|Name=mRNA_F-distichus_contig1066.562.1|organism=Fucus distichus monoicous|type=mRNA|length=514bp|location=Sequence derived from alignment at F-distichus_contig1066:14262..14775+ (Fucus distichus monoicous)
AGACGAACCCTGAGAACCTGATGGACCTTGCTAACTTCATGGGGCTTAAC
GCTTCTTTGGAACAAGTGCAAGAAGTACAAGATCGCCATCGGTCGAATTC
TTCTCATGGAAGCTTTGAAACCTACGGGCTACCGAGAGAGACGATCGAGT
TTGAGAATGAGACTATGATAAGACTCTTGCCGCAGGAAATGCTTGCTCGC
TATGGACTTTCCTTGAATTATGTTAATTAACACATTTTTGTGTTTACGGC
TACCTGTGATAATGGTCAACTGACGTTTACTCCGAGATCTAGTGGTATAA
ACATTACATACGCGGCTAAGGAGTAGTTCGATTAAGTTTGAATCCTGCTG
AGCTAGCTTTATTTCCTCAACAAGCTATTAATATTACGACGGACAATATA
GAGTCGGTTGGAGATTAACATATTGAAGAAATAGTATGGCAACGAGTTAT
ATGATGCTCCTACAAGTTTGAACGGATGGATCTAATTTGATGTAATAATT
TCTACGCGTTAACG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig1066:14262..14775+

>mRNA_F-distichus_contig1066.562.1 ID=mRNA_F-distichus_contig1066.562.1|Name=mRNA_F-distichus_contig1066.562.1|organism=Fucus distichus monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at F-distichus_contig1066:14262..14775+ (Fucus distichus monoicous)
ATGGACCTTGCTAACTTCATGGGGCTTAACGCTTCTTTGGAACAAGTGCA
AGAAGTACAAGATCGCCATCGGTCGAATTCTTCTCATGGAAGCTTTGAAA
CCTACGGGCTACCGAGAGAGACGATCGAGTTTGAGAATGAGACTATGATA
AGACTCTTGCCGCAGGAAATGCTTGCTCGCTATGGACTTTCCTTGAATTA
TGTTAATTAAATGGACCTTGCTAACTTCATGGGGCTTAACGCTTCTTTGG
AACAAGTGCAAGAAGTACAAGATCGCCATCGGTCGAATTCTTCTCATGGA
AGCTTTGAAACCTACGGGCTACCGAGAGAGACGATCGAGTTTGAGAATGA
GACTATGATAAGACTCTTGCCGCAGGAAATGCTTGCTCGCTATGGACTTT
CCTTGAATTATGTTAATTAA
back to top