mRNA_F-distichus_contig106580.557.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106580.557.1
Unique NamemRNA_F-distichus_contig106580.557.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig106580.557.1 vs. uniprot
Match: D8LEV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV7_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 6.690e-20
Identity = 56/106 (52.83%), Postives = 65/106 (61.32%), Query Frame = 3 
Query:   36 DETKRWGKFLALSVDIPRGLCPGGDD-----CSRVWMYGSVAWGALMERCRL---------AAASKPPPGFLSAEALDVACAVGNRAERTSDVWGIRESHVCGAGP 311
            D  + WGKFLALSVD+P+G CP  D      CSR+WMYGS AWGAL ERCR          A   +  PG L  + L+VACAVG+ A R  D WG+   HVCGAGP
Sbjct: 1017 DVMQMWGKFLALSVDVPQGPCPDDDPGGPAGCSRMWMYGSEAWGALRERCRAGLAVAGAGEAGGERGRPGEL--QPLEVACAVGDVANRGDD-WGLEAVHVCGAGP 1119
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BLAST of mRNA_F-distichus_contig106580.557.1 vs. uniprot
Match: A0A6H5KSC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC9_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 9.200e-20
Identity = 59/106 (55.66%), Postives = 68/106 (64.15%), Query Frame = 3 
Query:   36 DETKRWGKFLALSVDIPRGLCPGGDD-----CSRVWMYGSVAWGALMERCR--LAAAS-------KPPPGFLSAEALDVACAVGNRAERTSDVWGIRESHVCGAGP 311
            D  + WGKFLALSVD+P+G C G D      CSR+WMYGS AWGAL ERCR  LA A        +  PG L  E L+VACAVG+ A+R  D WG+   HVCGAGP
Sbjct: 1106 DVMQMWGKFLALSVDVPQGPCLGDDPGAPAGCSRMWMYGSEAWGALRERCRAGLAVAGAGGXXXXRGRPGKL--EPLEVACAVGDVAKRGDD-WGLEAVHVCGAGP 1208
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106580.557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEV7_ECTSI6.690e-2052.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSC9_9PHAE9.200e-2055.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106580contigF-distichus_contig106580:244..1935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1632
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106580.557.1prot_F-distichus_contig106580.557.1Fucus distichus monoicouspolypeptideF-distichus_contig106580 1478..1807 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.510201-UTR-F-distichus_contig106580:243..14771622928992.510201-UTR-F-distichus_contig106580:243..1477Fucus distichus monoicousUTRF-distichus_contig106580 244..1477 -
1690885096.2140992-UTR-F-distichus_contig106580:243..14771690885096.2140992-UTR-F-distichus_contig106580:243..1477Fucus distichus monoicousUTRF-distichus_contig106580 244..1477 -
1622928992.5546482-UTR-F-distichus_contig106580:1807..19351622928992.5546482-UTR-F-distichus_contig106580:1807..1935Fucus distichus monoicousUTRF-distichus_contig106580 1808..1935 -
1690885096.3286088-UTR-F-distichus_contig106580:1807..19351690885096.3286088-UTR-F-distichus_contig106580:1807..1935Fucus distichus monoicousUTRF-distichus_contig106580 1808..1935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.528386-CDS-F-distichus_contig106580:1477..14831622928992.528386-CDS-F-distichus_contig106580:1477..1483Fucus distichus monoicousCDSF-distichus_contig106580 1478..1483 -
1690885096.232629-CDS-F-distichus_contig106580:1477..14831690885096.232629-CDS-F-distichus_contig106580:1477..1483Fucus distichus monoicousCDSF-distichus_contig106580 1478..1483 -
1622928992.5412679-CDS-F-distichus_contig106580:1543..18071622928992.5412679-CDS-F-distichus_contig106580:1543..1807Fucus distichus monoicousCDSF-distichus_contig106580 1544..1807 -
1690885096.2448156-CDS-F-distichus_contig106580:1543..18071690885096.2448156-CDS-F-distichus_contig106580:1543..1807Fucus distichus monoicousCDSF-distichus_contig106580 1544..1807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106580.557.1

>prot_F-distichus_contig106580.557.1 ID=prot_F-distichus_contig106580.557.1|Name=mRNA_F-distichus_contig106580.557.1|organism=Fucus distichus monoicous|type=polypeptide|length=90bp
MYGSVAWGALMERCRLAAASKPPPGFLSAEALDVACAVGNRAERTSDVWG
IRESHVCGAGPPLKTPVVYPERLEGWKAEEATRWQSAKA*
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mRNA from alignment at F-distichus_contig106580:244..1935-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106580.557.1 ID=mRNA_F-distichus_contig106580.557.1|Name=mRNA_F-distichus_contig106580.557.1|organism=Fucus distichus monoicous|type=mRNA|length=1692bp|location=Sequence derived from alignment at F-distichus_contig106580:244..1935- (Fucus distichus monoicous)
AGGACGAGGATAATGACGAGGACCATTACCACGACGACGAGACGAAGAGG
TGGGGAAAATTCCTGGCGCTTTCCGTGGACATTCCGCGGGGGCTGTGCCC
CGGCGGCGACGATTGCTCCCGCGTGTGGATGTATGGGAGCGTGGCGTGGG
GAGCCCTGATGGAGCGCTGTCGTCTCGCCGCTGCCTCGAAGCCACCGCCG
GGATTCCTATCGGCGGAGGCGTTGGACGTCGCCTGCGCGGTCGGCAACCG
GGCGGAGCGCACCAGCGATGTTTGGGGAATCAGGGAGAGCCACGTTTGCG
GGGCTGGCCCGCCCTTGAAGACCCCCGTGGTATATCCAGAGCGGCTTGAG
GGATGGAAGGCGGAGGAAGCTACTCGGTGGCAGTCTGCGAAGGTTTGGAA
TGTTCGCGGTCTAAGTGCTGCGGTGGAGACGTTTTCGTAGTTCTGTGTGG
AGGCGTGATGGTGATGTTGGTGTCGGTAGCTTTCTTCTCTCGTAATGTCG
CACTAATTGTTTCGATAGCTTGGTGTGCTGCACTTGTTGCACTTGTTGCT
TTCCGAGCGCGGGTGATTATTTTTTACCTTTTATTTGCAGTACGTTCGTG
GGCCTTTCGGCGTGAATTCTTTGTTGTAGGTGCTTGCTTGGGCTTGCTTT
GTCCCTGTGGTGGTTAATGTTTCTTCTTGAAAAAAATATGTGTTGTGTTG
CACGTGTCAGTGTGTCCACCATACGCATGTTACCATTTACTCGAGCTCGT
GTATTTTTGAGAGTGTTGTGTGAGGTGTCTGGACAGTGTACGGAGTGTTC
GAACCACAAAGCCAACACGCGGCGCACCCGTATTCCGCCAGTGGTCAGCA
CAAAATTTAGCTTTGATTGTTCGAAATAGAGAGGGCTTTGAGCGTTTGGA
AAAAAGCACCGGAAGATTCATCCCCGCCGTAGGTTTACCGAAATAGTTGG
GAGGTGGGCAGAGAGAGCTCTAAGAAATTCGAGCCGCCACGATCATGACT
TAGATTGCGCATCACGTTTTTTGCCGAACTTTCACTGTACCTATCCTATA
CACACACCTAATAATACTGGCTGTGTCCCCAAGCCCCGGATTTGCCATTT
TGAAGGCTTTAACTTGTCGTTGTTGTATGACCACGATGTGTGTGTATAAC
GAAATGTATGGGTCTCATGTTCATTTTTTCGCGACAAAAGTTGCCACTAG
TTTAGGGGAGCGTGCGGGCATTACAGTCATAGTCTACGCTATTCACGGGG
CATATTACCCGCGCCCCACTGTAAGCAAGTGCTGTCAGTAGTCTTTGATA
AAAATGTTAATAGTCGTTGACGACCGGTATGACGTTCAGCGGGTATAGTA
CTGCAGTGTGTGCGGTGTAGTGCGATAGGTGTATTATTCGAAGACGGGTG
CGCGCTGAGCCAAAAAACAGGGATAGCGTTGTGGCGCGTTTTGCCTCGGC
CGCATTCTGCGGTCAGCGACCTCTCGACGACAGTGGAGACTCTAGAGAAG
ATATCAACCGACAGGCAGATCAGGTGAGTCGTTTCATGGAATGTGGAATG
TGTGTAGAAAGCTCCGGTGAGGTGATGTATGAGATCAACCCGGAATAACG
TATGGGTGACCATGGTTCTATTCTGGCTAATATTTGCTGGCCTGCAGATA
GCTCCGTGATGTGGTACGGCAATTTACATGGCCGTTTGAATC
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Coding sequence (CDS) from alignment at F-distichus_contig106580:244..1935-

>mRNA_F-distichus_contig106580.557.1 ID=mRNA_F-distichus_contig106580.557.1|Name=mRNA_F-distichus_contig106580.557.1|organism=Fucus distichus monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at F-distichus_contig106580:244..1935- (Fucus distichus monoicous)
ATGTATGGGAGCGTGGCGTGGGGAGCCCTGATGGAGCGCTGTCGTCTCGC
CGCTGCCTCGAAGCCACCGCCGGGATTCCTATCGGCGGAGGCGTTGGACG
TCGCCTGCGCGGTCGGCAACCGGGCGGAGCGCACCAGCGATGTTTGGGGA
ATCAGGGAGAGCCACGTTTGCGGGGCTGGCCCGCCCTTGAAGACCCCCGT
GGTATATCCAGAGCGGCTTGAGGGATGGAAGGCGGAGGAAGCTACTCGGT
GGCAGTCTGCGAAGATGTATGGGAGCGTGGCGTGGGGAGCCCTGATGGAG
CGCTGTCGTCTCGCCGCTGCCTCGAAGCCACCGCCGGGATTCCTATCGGC
GGAGGCGTTGGACGTCGCCTGCGCGGTCGGCAACCGGGCGGAGCGCACCA
GCGATGTTTGGGGAATCAGGGAGAGCCACGTTTGCGGGGCTGGCCCGCCC
TTGAAGACCCCCGTGGTATATCCAGAGCGGCTTGAGGGATGGAAGGCGGA
GGAAGCTACTCGGTGGCAGTCTGCGAAGGCGTGAGCGTGA
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