mRNA_F-distichus_contig106405.548.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106405.548.1
Unique NamemRNA_F-distichus_contig106405.548.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106405.548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106405contigF-distichus_contig106405:949..1656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size708
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106405.548.1prot_F-distichus_contig106405.548.1Fucus distichus monoicouspolypeptideF-distichus_contig106405 994..1479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.6412487-UTR-F-distichus_contig106405:948..9931622928991.6412487-UTR-F-distichus_contig106405:948..993Fucus distichus monoicousUTRF-distichus_contig106405 949..993 +
1690885095.521996-UTR-F-distichus_contig106405:948..9931690885095.521996-UTR-F-distichus_contig106405:948..993Fucus distichus monoicousUTRF-distichus_contig106405 949..993 +
1622928991.666932-UTR-F-distichus_contig106405:1479..16561622928991.666932-UTR-F-distichus_contig106405:1479..1656Fucus distichus monoicousUTRF-distichus_contig106405 1480..1656 +
1690885095.5389082-UTR-F-distichus_contig106405:1479..16561690885095.5389082-UTR-F-distichus_contig106405:1479..1656Fucus distichus monoicousUTRF-distichus_contig106405 1480..1656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.6525762-CDS-F-distichus_contig106405:993..14791622928991.6525762-CDS-F-distichus_contig106405:993..1479Fucus distichus monoicousCDSF-distichus_contig106405 994..1479 +
1690885095.5307238-CDS-F-distichus_contig106405:993..14791690885095.5307238-CDS-F-distichus_contig106405:993..1479Fucus distichus monoicousCDSF-distichus_contig106405 994..1479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106405.548.1

>prot_F-distichus_contig106405.548.1 ID=prot_F-distichus_contig106405.548.1|Name=mRNA_F-distichus_contig106405.548.1|organism=Fucus distichus monoicous|type=polypeptide|length=162bp
MDSSRLYLIVCTSIYISLYIIGRRHCYCERVNLQIAYALILWWKVSFINV
CVFWCGRALVVPDLLFVTLCNIIWHHTIPQGQRSKILDVVWVFRSVRPLP
TLFGIVFYLSKNPSPLSTRGCTGDFYLFSDRPYTLCPCPRVRSCVWYLHG
TCFVCAGSNHK*
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mRNA from alignment at F-distichus_contig106405:949..1656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106405.548.1 ID=mRNA_F-distichus_contig106405.548.1|Name=mRNA_F-distichus_contig106405.548.1|organism=Fucus distichus monoicous|type=mRNA|length=708bp|location=Sequence derived from alignment at F-distichus_contig106405:949..1656+ (Fucus distichus monoicous)
GTGTGTGTGTTTTGTCGTCGTCGTGGTCGTTCGTTCGACTTTTTGATGGA
CTCTTCTAGACTGTATTTGATTGTATGTACATCTATATATATATCGCTAT
ATATAATTGGTAGGCGACATTGTTACTGTGAGAGAGTGAATCTACAGATT
GCATATGCACTTATTTTATGGTGGAAGGTTTCTTTTATAAATGTTTGTGT
CTTCTGGTGCGGCCGGGCCTTGGTCGTTCCGGACCTGTTATTTGTCACGC
TATGTAACATAATATGGCACCATACTATTCCACAAGGCCAAAGGAGTAAA
ATACTTGATGTGGTCTGGGTCTTTCGTTCCGTTCGCCCCCTTCCAACATT
ATTCGGAATTGTATTTTATCTATCTAAAAATCCAAGTCCCTTGAGTACAA
GGGGATGTACTGGGGATTTTTATTTATTTTCCGATCGACCGTACACCCTC
TGTCCATGCCCTCGGGTGAGGTCTTGTGTGTGGTATTTGCATGGCACTTG
TTTTGTGTGTGCGGGGAGTAATCACAAGTGACCCTGTAAATCCATGCGGA
TGATGACGATCTTCGCTGTAATATCCAAAACTACTCGTGTCTACGGAGCA
GCACTGCTGCTGCGTCTACGTCGCGTACTTGGGTAATATAGAGGTGGCCA
AATTGCGGTGTTTTTAGCTGTGGGCTACAGGATAATAGCGGTCAGCTTGG
GATGGGAG
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Coding sequence (CDS) from alignment at F-distichus_contig106405:949..1656+

>mRNA_F-distichus_contig106405.548.1 ID=mRNA_F-distichus_contig106405.548.1|Name=mRNA_F-distichus_contig106405.548.1|organism=Fucus distichus monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at F-distichus_contig106405:949..1656+ (Fucus distichus monoicous)
ATGGACTCTTCTAGACTGTATTTGATTGTATGTACATCTATATATATATC
GCTATATATAATTGGTAGGCGACATTGTTACTGTGAGAGAGTGAATCTAC
AGATTGCATATGCACTTATTTTATGGTGGAAGGTTTCTTTTATAAATGTT
TGTGTCTTCTGGTGCGGCCGGGCCTTGGTCGTTCCGGACCTGTTATTTGT
CACGCTATGTAACATAATATGGCACCATACTATTCCACAAGGCCAAAGGA
GTAAAATACTTGATGTGGTCTGGGTCTTTCGTTCCGTTCGCCCCCTTCCA
ACATTATTCGGAATTGTATTTTATCTATCTAAAAATCCAAGTCCCTTGAG
TACAAGGGGATGTACTGGGGATTTTTATTTATTTTCCGATCGACCGTACA
CCCTCTGTCCATGCCCTCGGGTGAGGTCTTGTGTGTGGTATTTGCATGGC
ACTTGTTTTGTGTGTGCGGGGAGTAATCACAAGTGAATGGACTCTTCTAG
ACTGTATTTGATTGTATGTACATCTATATATATATCGCTATATATAATTG
GTAGGCGACATTGTTACTGTGAGAGAGTGAATCTACAGATTGCATATGCA
CTTATTTTATGGTGGAAGGTTTCTTTTATAAATGTTTGTGTCTTCTGGTG
CGGCCGGGCCTTGGTCGTTCCGGACCTGTTATTTGTCACGCTATGTAACA
TAATATGGCACCATACTATTCCACAAGGCCAAAGGAGTAAAATACTTGAT
GTGGTCTGGGTCTTTCGTTCCGTTCGCCCCCTTCCAACATTATTCGGAAT
TGTATTTTATCTATCTAAAAATCCAAGTCCCTTGAGTACAAGGGGATGTA
CTGGGGATTTTTATTTATTTTCCGATCGACCGTACACCCTCTGTCCATGC
CCTCGGGTGAGGTCTTGTGTGTGGTATTTGCATGGCACTTGTTTTGTGTG
TGCGGGGAGTAATCACAAGTGA
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