mRNA_F-distichus_contig106403.547.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106403.547.1
Unique NamemRNA_F-distichus_contig106403.547.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106403.547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106403contigF-distichus_contig106403:123..290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.5986567-CDS-F-distichus_contig106403:122..2901622928991.5986567-CDS-F-distichus_contig106403:122..290Fucus distichus monoicousCDSF-distichus_contig106403 123..290 -
1690885095.5074773-CDS-F-distichus_contig106403:122..2901690885095.5074773-CDS-F-distichus_contig106403:122..290Fucus distichus monoicousCDSF-distichus_contig106403 123..290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106403.547.1prot_F-distichus_contig106403.547.1Fucus distichus monoicouspolypeptideF-distichus_contig106403 123..290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106403.547.1

>prot_F-distichus_contig106403.547.1 ID=prot_F-distichus_contig106403.547.1|Name=mRNA_F-distichus_contig106403.547.1|organism=Fucus distichus monoicous|type=polypeptide|length=56bp
AERKALLTLFWCTAGPGWIQKFGWQDGDSDLAEWWGIGVDPSDKGVTLVD
LRRNGL
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mRNA from alignment at F-distichus_contig106403:123..290-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106403.547.1 ID=mRNA_F-distichus_contig106403.547.1|Name=mRNA_F-distichus_contig106403.547.1|organism=Fucus distichus monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at F-distichus_contig106403:123..290- (Fucus distichus monoicous)
GCGGAGAGAAAGGCTCTCCTGACTCTATTTTGGTGCACAGCTGGCCCCGG
GTGGATACAAAAGTTTGGATGGCAAGACGGTGATAGCGATCTCGCAGAAT
GGTGGGGCATCGGCGTCGATCCCAGCGATAAAGGAGTGACTTTGGTAGAC
CTCCGTCGAAACGGTCTC
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Coding sequence (CDS) from alignment at F-distichus_contig106403:123..290-

>mRNA_F-distichus_contig106403.547.1 ID=mRNA_F-distichus_contig106403.547.1|Name=mRNA_F-distichus_contig106403.547.1|organism=Fucus distichus monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at F-distichus_contig106403:123..290- (Fucus distichus monoicous)
GCGGAGAGAAAGGCTCTCCTGACTCTATTTTGGTGCACAGCTGGCCCCGG
GTGGATACAAAAGTTTGGATGGCAAGACGGTGATAGCGATCTCGCAGAAT
GGTGGGGCATCGGCGTCGATCCCAGCGATAAAGGAGTGACTTTGGTAGAC
CTCCGTCGAAACGGTCTCGCGGAGAGAAAGGCTCTCCTGACTCTATTTTG
GTGCACAGCTGGCCCCGGGTGGATACAAAAGTTTGGATGGCAAGACGGTG
ATAGCGATCTCGCAGAATGGTGGGGCATCGGCGTCGATCCCAGCGATAAA
GGAGTGACTTTGGTAGACCTCCGTCGAAACGGTCTC
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