mRNA_F-distichus_contig10639.545.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10639.545.1 vs. uniprot
Match: D8LPQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPQ5_ECTSI) HSP 1 Score: 1286 bits (3328), Expect = 0.000e+0 Identity = 1029/2476 (41.56%), Postives = 1284/2476 (51.86%), Query Frame = 1
Query: 1 KATGRGDLQGRAASLCISEVRMCLAASLGDERADPWGDSIRSGQAADRRIPFGHLRELAGVCLSYSIDFSSAFGSATAGAANRGSNGRGDTVSERARGGEANNRRILMLDALPAVLGACYTAAAADEETDQSTASSSECDSSDCGDGYQASFL----------------------------ELQQADG---GGDRDRDKRSSAAKKL-EKKKGKYRGEHGGERAVAFGRGGLRG------LPEQGKALLSEVIDTILDRPWPPELALPLLVMFEEIRPLVEVL---------------GYQRSDEDQVWMRVRSRLMECAWMGGLDGADFTGILRQVCIMCEIDYRPRYEQPSEDSTLDALDYVED-------AKEVETSGQL--SRGWPTTAKQVDGKCGSRS---------------WLACLRQLHAAVPPQWLSTAELVLEQILHQMPDVADSLLNAIRDASSRKV----VEVPDRERRSLGPGPEDPT--------------------TSIDDDLGLLLLLLREASPLRACSLPLLPHGADRGRRAEESLQIVLLLGAR-----RCVV---SGANREVSGRQGREEALSGVRGLLQRVLCSRRGVMFRTGGRLSSGAGSSSDVSG-----------AGGVW-SGEEYGGVASERASQLLELALRWLEESKGGAGFECNGVASSGPFGRGGCNTADLTAEDLASETISAVFDTVAGARPRLLRALLGGVFDQSQGGATCGPSYLRAWEALMAQEAQQQCRRLTPYSQVFSDALGRLTLIPRSRARRVVESMLPLADACPAHASALMSLCRKLAARGETKGRLLALHALACILVWNARRLRRGGCGGCLDQEGMREDLVAMFRKALEGGLQTATRADTLHLLASKVAVPAPAEIP------RAATVSGAVVGKATATAPRGALDVEPPPAVDFSVLRGLRELLTTRLFRFFAHKDELLDTTSTSGTFSSVIDNLGGRADERGCPGDEGGGGCTGGRYRGKGKQRAARRRRRAGNFRLVPLRLLDDGGATNG-------LGLGRGPHDARPIRGRGRVIPRDAIGHLLKCCWALVPQSENSFDAAATAGSGHGRVVVGPGKRAEAEAIARTILGVTVGGLCEGRGESVGGGSGVR-----TREGEALVAVVEFLEGGGSMETNRLIAPSGPRAPVRLEGFDNYGSGELPAPSPPPACHPGLVGSLPALAVVVTLAEALVDCLLSGVSCPPVRPFLRPTPRYATTLGIAANGQKASNEGGSGRIAPRNGS-DGTLVLWAVADVFTVLAAAARAAEGFAGTEGFGSAGGQPPKGHSAENLSEIVVSLPAEILGLSRRSDFDASAAGATAKDDDEL--LDGARGGAADAVQV---------QCPLLSASSALVLAKEFLLWAATEKG-SPARAAAEGWDAGVGVWLGLTHSVRTLAAALEFARVRGGEVEEGREDDEHFASVAGWEAHDGSPSSEAIALAVFELRAIVGTPSAALSVMDP-----------------ICSMRINSGESAARTDSSAPATTRPSSRRPPPGSMVTGFLKRMSERWKTHLDWGIPGAAPPRRNSARLRMGDSRDIRHNEGYLAHCRGDNAAQNLRAESEDSFFALRYELLRTERLALSTLLFGPSADASTRRWVTRAALLSAQRKSSHKEGGGDGAVPSRGFSSSTPAPAERRGERGAPAEGQKHSGGAESEPEAKSCLVLVGRNSKRGKVRRS--RRHASMSGETRDSAGKAGSAAPRRDSKEGKSCLGTGTSNGDFGLRGGGKVPGRFRQATGCESMEKNEWEAVGRLCRLVALEMREGLENGLTVKLTQAYLDLIELLGNAALEHRHPNERAPAFAAVGDAAPSIAAD---EEGLVQ----RADDHKWPED---EDAGGVLLSITTCHCIGQVTLFKRLLRGALRFDGIGAVRGHFGQHMSSVATVIELEARNREIS---RDKTFGETGGGFDKTGGEAVVG-RVAAQSPSRRAPKRCYRMLVHCIRWVQVRNGGRNYCDGSTALPDVEKDVRESNEKTGVGEN--------PAGFHDLGNDNGSRDGDAGCGKKRHDYPSHGFRDTGGCYSFCPDEVKFATSRECYAAMHVTLLEIETVLVAAGSLGGGVSEGVDSNAATAPNTDDADLANIVMAVSHGLRNFFKPIETVSTRWPPSNTKTNQPSGTSAAPPESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPVPADLVPEHIKLLLLRVLERVYLVGRACALNAAGGLSKSPSAATLTPLRSSSLPPSTSSPLLAPATSTKIRRQSRAAGNI--GRPGDQAGGGPATRGKVVADADAS--SGNKRGLQQ--ITTGRR---ASTICPSSPLSGAPANDLPVGAGNKFLKRSRNSPGGETEALKSPRSRIMEMSTMTTTTNAAVSDEHQESHLLLATLLPAVAISSGDCLRLMAQARAWAEARRAESRRPGEDLCRKRVS 6822
+A GRGDLQGRAASLCISEVRMCL+A + GD S RR+P LRELAGVCLS+S+D SA S G G R +ANNRR+LML A PAVLGAC ++++ G G + D +RSS + + RG + ++ GRG G LP++G+A+L +V D +LDRPWP LALPLLVMFEEI LVE+L G ++ VW RVRSRLME WMGGLDGADFTG++RQVC++C+ D R YE + S+ + V A E +L G + DG G R W++CLRQL+AAVPP+W+ST ELVLEQ LHQMP VA+SLL+AI+D SS V + LG + TSI DL LL+LLLREASPLRACSLPLLP G DRGRRAEE ++ +LL AR R V S N +++ +GRE AL R LL+ VLCS G G+G +GGV+ +G E GV SERASQLLELALRWLEE GG+G + S F G T +L +D+ASETISAVFD V ARPRLLRALL G++DQSQGGA C +Y+RAWEALMAQE ++CRRL P+SQ SDALG+LTL+PR RARRVVESMLPLAD CP ASA++SLCRK + +GE+KGRLL LHA+ CIL WNARR G GGCLDQEGM+EDLV MFR+A EGGLQT RAD LHLLA+K+A I RA +S + R + V+PPPA+D + L GLR L+ RLFRFFAHKDE+L S + DN GG A G D R KGK +A RRRR G F+LVPLRLL++ GA+ G G+GP R RGRG V+PRDAIG LLKCCWALVP + G+ HG ++ P KRAEAEAIAR +LG EG G GG V TREGEALVAVVEFL+GGG+MET R++ PS + P + E D+ E PAP+PP ACHPG+V L L VVVTLAEAL DCLL+G+SCP F R R + A+G + G G P +G + LVLWA+ADVFT+LAAA R A+G A G S + P+ + E LSEI+ SLPAE LGLSR S+ +A+ G DD + G RG Q LLSA+SALV +EFL WA EKG SPA AEGWD G+GVWLGL HSV+TL+ AL+ RG +G SV G + P +EAIALAVF+LR +VGTPSAA+SV+DP S + G + ++ +P + +SRRPPPG M+TGFL +MS RWKT L WG+P APPRR S G C G A ++AE+ED FFAL+ ELLR+ERL LS LL GP+A + R W RAAL SA + E + P G S+++ A + +R + EP G S G+V R+ R+ A+++G G+ GS A + + G LG ++ G G RG + G G E +K W +G LCRL A EMREGLE GL+VKL+ AYLDLIELLG+AALEHR R P A A + AAD E+G +ADD D EDAGGVLLSI TCH + Q LF RL+RGA+R DGIG ++ A++ EL AR+REIS G+ GGG G V G R A SP + +R R+LVHC+RW++ R+G + G TA+ E+D ES+E+ GV P H G G D A G++ YS CP++VKFA+SREC+AAM L+E ET L S GGV G A++ N LA+++ V+ LR FF P T STR LLL+RVLERV+LVG+ +A+ L+K S AT T + + P RR+ + A + G+PGDQAGG P +++ SG R + +GRR + ++ SS G A AG+ A S SR+ + S MT A+ +LA +LPAVA++SGDCLRLM AR WAEA R +SRR G+D CRKR S
Sbjct: 107 QAIGRGDLQGRAASLCISEVRMCLSAC-ANMTGVANGDR-GSTNPVHRRMPLAQLRELAGVCLSFSMDIHSATAS--------GRPAPGVYAGGRRGAEDANNRRVLMLQAFPAVLGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKMRKGKGKSVGTNEDERRRSSVGDHVGDGLSTGVRGRSRSGKVISNGRGASGGGWSEGGLPQRGEAILWDVTDALLDRPWPLRLALPLLVMFEEIFGLVELLERRGCEARHQAQESGGGAVPGKESVWTRVRSRLMELVWMGGLDGADFTGVIRQVCVLCDTDDRRNYEHDTRHSSPPLREEVSGCDVAPGAATSHEPQERLLPKNGHSERTEMRDGVDGVRKARRGEQTRVSSRGGGWISCLRQLYAAVPPEWVSTVELVLEQTLHQMPGVAESLLDAIQDTSSSSVNTGEADYGVMTGAGLGSSQAEXXXXXXXXXXXXXXXXXXXSTPTSISHDLALLILLLREASPLRACSLPLLPVGVDRGRRAEEGVRSLLLHAARSGFDGRAAVISRSSGNNQMNEYRGREGALDSTRALLRAVLCSEPGCK---------GSGXXXXXXXXXXXXXXXXXXSGGVFRNGGESSGVVSERASQLLELALRWLEEGDGGSGGD-----GSVAFDTEGVGT-ELNIQDIASETISAVFDAVVEARPRLLRALLSGIYDQSQGGAACAWNYMRAWEALMAQETGRECRRLVPHSQCVSDALGQLTLLPRGRARRVVESMLPLADVCPTQASAMISLCRKCSVQGESKGRLLTLHAVTCILAWNARRGHTGRNGGCLDQEGMQEDLVGMFRRAFEGGLQTVARADALHLLATKLATSVAGAITQGTQYNRAQLLSAMPCQMPQQSHARATIHVDPPPAIDRTALNGLRAFLSMRLFRFFAHKDEVLSADSNA---DGGGDNSGGPAPSGGYDADS--------LSRRKGKHKA--RRRRGGRFQLVPLRLLEERGASGGGHSFGGKSSRGKGPGIVRNGRGRG-VVPRDAIGQLLKCCWALVPAGGPTGTDVPDDGA-HGTIMPVPEKRAEAEAIARMLLGAGSRRRSEGGGRERGGRPSVGRVSVDTREGEALVAVVEFLQGGGTMETLRMVTPSNQQTPDQQEADDDVI--EPPAPAPP-ACHPGVVSPLTTLGVVVTLAEALADCLLTGISCPRAIHFSRKASRCEVSRVEPADGHHVGDGGDGG---PTSGKPEAPLVLWAIADVFTLLAAATRVADGIAAPLGGLS---KQPQTRAPEGLSEIISSLPAETLGLSRGSELNATVVGVEEGDDSDSGGAMGERGXXXXXXXXXXXXXXASGQSSLLSATSALVFVREFLGWAEKEKGKSPAALVAEGWDGGIGVWLGLVHSVQTLSRALK--TTRGNCSRDGA----GGVSVGGAATQNSDPCAEAIALAVFQLRTVVGTPSAAVSVVDPSAEASKTTVSSDERSAGAASPSVGHGTARGTHETDSPIMHQ-TSRRPPPGKMITGFLTKMSMRWKTALPWGLPSVAPPRRTSXXXXXXXXXXXXXXXG----CGGHAVAGGVKAEAEDLFFALQAELLRSERLVLSILLVGPNASLAQRGWTMRAALASACPRQL-AENVEEWRSPPPGTSAASSAATKCAPDR-------PRAFSRREEPPESGSGPARGAASSNGRVVRATLRKSATLAG------GRNGSDAAATEQEFGGK-LGRASNMGVGGRRG---LVGAKGVREGGEGGDK--WNGLGGLCRLAAAEMREGLETGLSVKLSHAYLDLIELLGSAALEHRSCARRTPKPNAAAGPAETSAADRSSEQGSAGACWGQADDAMNTGDGNKEDAGGVLLSIVTCHTVSQSKLFNRLVRGAVRLDGIGISHHPQPPRRTAAASLAELRARDREISCVANHPDGGQGGGGAGCNGANRVEGLRAVAVSPP--SLERSTRLLVHCVRWIRARHGNKR---GRTAILLSEEDGSESSEEEGVXXXXXXXXXXLPDAEHASGKGKGLSDLRARDGRQSR-------------YSLCPEKVKFASSRECFAAMRTALVECETSL----SSVGGVDVGGGGGASSTGN-----LADVLATVAFCLREFFTPGST-STR--------------------------------------------------------------------LLLMRVLERVFLVGKGALASASATLAKPSSTATATVVAVRAAPXXXXXXXXXXXXXXXKRRRQQHAATVENGKPGDQAGGAPCRTPAKCGGTNSTERSGGSRAAKDGDSGSGRRPPQSRSVSSSSGRQGKGAXXXXXRAGSDAAA-----------AAHSELSRLGQESGMTKAPEGALD-------AVLAPVLPAVALASGDCLRLMLAARTWAEALRLKSRRGGDDPCRKRAS 2388
BLAST of mRNA_F-distichus_contig10639.545.1 vs. uniprot
Match: A0A835YTT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT1_9STRA) HSP 1 Score: 176 bits (446), Expect = 3.520e-40 Identity = 254/986 (25.76%), Postives = 348/986 (35.29%), Query Frame = 1
Query: 622 KALLSEVIDTILDRPWPPELALPLLVMFEEIRPLVEVLGYQRSDEDQVWMRVRSRLMECAWMGGLDGADFTGILRQVCIMCEIDYRPRYEQPSEDSTLDALDYVEDAKEVETSGQLSRGWPTTAKQVDGKCGSRSWLACLRQLHAAVPPQWLSTAELVLEQILHQ-MPDVADSLLNAIRDASS--------------------RKVVEVPDRERRSLGPGPEDPTTSIDDDLGLLLLLLREASPLRACSLPLLPHG-ADRGRRAEESLQIVLLLGARRCVVSGANREVSGRQGREEALSGVRGLLQRVLCSRRGVMFRTGGRLSSGAGSSSDVSGAGGVWSGEEYGGVASERASQLLELALRWLEESKGGAGFEC-------NGVASSGPFGRGGCNTADLTAEDLASETISAVFDTVAGARPRLLRALLGGVFDQSQGGATCGPSYLRAWEALMAQEAQQQCRRLTPYSQVFSDALGRLTLIPRSR----------------ARRVVESMLPLADACPAHASALMSLCRKLAARGETKGRLLALHALACILVWNARRLRRGG--CGG------------------------------------------CLDQEGMREDLVAMFRKALEGGLQTATRADTLHLLASKVAVPAPAEIPRAATVSGAVVGKATATAPRGALDVEPPPAVDFSVLRGLRELLTTRLFRFFAHKDELLDTTSTSGTFSSVIDNLGGRADERGCPGDEGGGGCTGGRYRGKGKQRAARRRRRAGNFRLVPLRLLDDGGATNGLGLGRGPHDARPIRGRGRVIPRDAIGHLLKCCWALVPQSENSFDAAATAGSGHGRVVVGPGKRAEAEAIARTILGVTVGGL--CEGRGESVGGGSGVRTREGE--ALVAVVEFLEGG------------GSMETNRLIAPSGPRAPVRLEGFDNYGS-GELPAPSPPPACHPGLVGSLPALAVVVTLAEALVDCLLSG 3261
+ ++ V + + RPWPP LALPLLV+ E++ + R+ L+ C G+ +DF G+ +Q+ ++ S L A DA + WL L ++ A PP L+T ELVLEQ LHQ A +LL A+ D S P LLLLL R A+PLR C+LPLLP A G A+ +L+ +L A + SG G G E S+RA+QL + AL+WL+ S GG NGVA + + + VF V +RP +LR LLG + D+++ A YL AWEAL+A+EAQQ+C L P++ + DALG LTL P ARRV+++ PLA A A+A++ L RK A+ + +GRLLALHAL L GG CG L+ D++ + R L+GGL +A L+ + A P A ALDV + RL R FA + KGK+R A R G +LVPLRLL++ G RG AR R+ +GHLL C WAL Q+ + A A +G R V G A+A +AR ++G + G G+ + G R R A +A+V +L GG GS E A G L G ++G+ G A P P C VG+ AL V AE L+ CLL G
Sbjct: 303 EGIMRMVHEALSARPWPPPLALPLLVLCEDV--MAAXXXXXXXXXXXXXXGARALLLRCVGGAGMAPSDFAGVAKQLLVL---------------SQLSAASAAADA------------------------ATAPWLQALIAVYCAAPPPALATLELVLEQALHQDSSGSARALLRAVTDDGSDGGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPICHAWQRANLLLLLRRGATPLRECALPLLPPALAAGGAAADAALRDLLFSAAAASLGSGG-----GSSGVEXXXXXXXXXXXXXXXXXXXXXX------------------------------XXSDRAAQLFDAALKWLDVSGGGXXXXXXXXXXXXNGVART-----------------VVESVVLQVFALVPDSRPHVLRRLLGALLDRTRAAAV-REGYLGAWEALLAREAQQRCAALQPHAALVGDALGALTLQPPQATRSLPMTPPSTSILHVARRVLDACAPLAHASAPLAAAVVGLARKCLAQADARGRLLALHALTAALGTPPEAWGGGGGPCGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACVTALNNPERLHDIIELLRWGLDGGLPCGMKAAAYQRLSVRRAAP---------------------HAAAAALDV-----------------IQRRLLRLFARAPPPQSS---------------------------------------KGKKRGAMER---GALQLVPLRLLEEWAPREGGERQRGHVLAR-------CCAREPLGHLLGCAWALEVQA-GGYAAGDAAAAGGNRGVSAQGGLADALLLARAVVGGSASAAERAGGAGDELQLGEAGRQRAAHVRAALALVRYLRGGALPHRVDDEDPDGSAEDAAEAAVQGS---AELLGGGSFGARGGGAAALPLPQCDARAVGTQQALGVAAMAAEGLLSCLLLG 1103 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10639.545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10639.545.1 >prot_F-distichus_contig10639.545.1 ID=prot_F-distichus_contig10639.545.1|Name=mRNA_F-distichus_contig10639.545.1|organism=Fucus distichus monoicous|type=polypeptide|length=2274bp KATGRGDLQGRAASLCISEVRMCLAASLGDERADPWGDSIRSGQAADRRIback to top mRNA from alignment at F-distichus_contig10639:418..10547+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10639.545.1 ID=mRNA_F-distichus_contig10639.545.1|Name=mRNA_F-distichus_contig10639.545.1|organism=Fucus distichus monoicous|type=mRNA|length=10130bp|location=Sequence derived from alignment at F-distichus_contig10639:418..10547+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10639:418..10547+ >mRNA_F-distichus_contig10639.545.1 ID=mRNA_F-distichus_contig10639.545.1|Name=mRNA_F-distichus_contig10639.545.1|organism=Fucus distichus monoicous|type=CDS|length=13644bp|location=Sequence derived from alignment at F-distichus_contig10639:418..10547+ (Fucus distichus monoicous)back to top |