mRNA_F-distichus_contig10638.544.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10638.544.1
Unique NamemRNA_F-distichus_contig10638.544.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10638.544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10638contigF-distichus_contig10638:5582..7957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1739
Cds size1305
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10638.544.1prot_F-distichus_contig10638.544.1Fucus distichus monoicouspolypeptideF-distichus_contig10638 6366..7670 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.1177046-UTR-F-distichus_contig10638:5581..57241622928991.1177046-UTR-F-distichus_contig10638:5581..5724Fucus distichus monoicousUTRF-distichus_contig10638 5582..5724 +
1690885094.9867551-UTR-F-distichus_contig10638:5581..57241690885094.9867551-UTR-F-distichus_contig10638:5581..5724Fucus distichus monoicousUTRF-distichus_contig10638 5582..5724 +
1622928991.1363196-UTR-F-distichus_contig10638:6361..63651622928991.1363196-UTR-F-distichus_contig10638:6361..6365Fucus distichus monoicousUTRF-distichus_contig10638 6362..6365 +
1690885094.996171-UTR-F-distichus_contig10638:6361..63651690885094.996171-UTR-F-distichus_contig10638:6361..6365Fucus distichus monoicousUTRF-distichus_contig10638 6362..6365 +
1622928991.171673-UTR-F-distichus_contig10638:7670..79571622928991.171673-UTR-F-distichus_contig10638:7670..7957Fucus distichus monoicousUTRF-distichus_contig10638 7671..7957 +
1690885095.1738079-UTR-F-distichus_contig10638:7670..79571690885095.1738079-UTR-F-distichus_contig10638:7670..7957Fucus distichus monoicousUTRF-distichus_contig10638 7671..7957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.1535056-CDS-F-distichus_contig10638:6365..76701622928991.1535056-CDS-F-distichus_contig10638:6365..7670Fucus distichus monoicousCDSF-distichus_contig10638 6366..7670 +
1690885095.0987995-CDS-F-distichus_contig10638:6365..76701690885095.0987995-CDS-F-distichus_contig10638:6365..7670Fucus distichus monoicousCDSF-distichus_contig10638 6366..7670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10638.544.1

>prot_F-distichus_contig10638.544.1 ID=prot_F-distichus_contig10638.544.1|Name=mRNA_F-distichus_contig10638.544.1|organism=Fucus distichus monoicous|type=polypeptide|length=435bp
MTLQRRQEMQDRRVSPWRSSVSATQCSPFSSMPPPPPSSPSPPSPPSLLP
GTPNAASRERSLGYGDGTGVLPSSSSPSPIPRTGQAEQPVLTAVPPPAET
SDCNDNGGGVRGYSGSGAVGTAITIAVHNAGRDGLSSKGDGGGGGVHVSS
MSGGASSSITDMVDAATANLTKSSTIVGYSSMISGLARKPVNVSGGVLGS
GCGVGVCGERADEERAQISSPSWSPSAVRLDGGVDASAAKSDRSLASSVV
CDTKRANVGDDNGGGPELSSSEMIADDGFACAAPNSSSPSSSGEVVGGEV
FVGGLRLGDHPTTDRGADRRGLQHTSGYPMAMSSTSFVAGHAAAVSAVHA
RAGVEIGGRGETGGEIQGTPQQSPLSVEAELGAVESSISAPWQARYEQEN
LPSQRKYPVVCQVPDGRDRAAAASREDRREMDTD*
back to top

mRNA from alignment at F-distichus_contig10638:5582..7957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10638.544.1 ID=mRNA_F-distichus_contig10638.544.1|Name=mRNA_F-distichus_contig10638.544.1|organism=Fucus distichus monoicous|type=mRNA|length=2376bp|location=Sequence derived from alignment at F-distichus_contig10638:5582..7957+ (Fucus distichus monoicous)
GCAACTGGAGGCAGAGATGGGCTTGATGAAGCAGAGGCATGACACGCTCA
GGCTGGAGAATCAAGTCCTTTGGAGCATAATGTGGGATGAGGGGGGAGAG
GTTTTTGTCCAACGGGCCACGGACGAGCTGGAGCGAGTCGTGAGTTGTCG
CACGACAAGCCCAGTCTAAGCTTTTTGAAATCGTGTCTATCGTCGAAGCG
CGATTCATCGGTGTGGTCGACTGCGTCTGAATGCGGTTATCGTGAATTTG
AGAAATATATCATGGGGATCATTTGGGTAAACATTTCTGAACCCTCTGGT
AGGGCAGGGCCTCACAAATGACTGGCATGGTATGGACGCCAAGCGTCTTT
CTCCTTTGGCTGGCGGTGAAACATTAATCCTGTTTATTTCCGTGCTCATA
CGTGTTCCTGGTCCTGCAAAAAACACTGAAGCTATCATCCGTCCTTCGCT
TTCCTCGCGACGATATTTTATGCGAGGGTCTCGCTTAGGCATTCACAACA
CGCTTTTGACTACTGTACACCCTGCTGCACGCGTGTCGTATTCTTGCCGT
GGAAGAGTTGCACGCCTTTCGTTGAGTGAACGACACACAATCGACTCGCC
TTAAACCTACGTGTCTAAACCTTGTTCGTCTAAGACTAACGGGGGTGCCT
CACCTATATTGCCCCCATTTGCCTCCCTACCCCCCCTCCTTTGCCCCGCA
AACGGGCATACCTTCGTGCATCGATTTGCTTCCCGCGATCGCTCTCGATA
CCTGTCGTGCCGTAAGTCAACTGGGTTCAGAGAGATGACATTGCAGCGTC
GTCAGGAGATGCAAGATCGGCGCGTTTCACCCTGGCGATCGTCCGTGTCG
GCGACGCAATGCAGCCCCTTTTCGTCTATGCCTCCGCCACCGCCATCGTC
GCCGTCGCCGCCATCGCCGCCATCGCTACTGCCTGGAACGCCGAATGCCG
CATCAAGAGAAAGGTCCCTCGGGTACGGGGATGGCACTGGTGTTCTTCCA
TCGTCGTCGTCCCCCTCTCCCATTCCGAGAACCGGACAAGCCGAACAACC
GGTGTTAACCGCTGTCCCTCCTCCAGCTGAAACCAGCGACTGTAACGATA
ACGGCGGTGGCGTTCGAGGTTATTCAGGGAGTGGCGCGGTTGGAACGGCA
ATTACGATCGCGGTGCACAACGCTGGGAGGGACGGGCTTAGCAGTAAAGG
CGATGGCGGTGGAGGCGGCGTCCATGTTTCGAGCATGTCAGGGGGCGCTT
CAAGCTCCATAACAGACATGGTGGACGCCGCTACGGCGAACCTCACGAAA
TCGTCCACAATAGTGGGATACTCGAGCATGATTTCTGGGTTGGCAAGGAA
ACCGGTGAATGTCAGTGGTGGCGTTCTTGGCAGCGGTTGTGGGGTAGGAG
TATGCGGCGAGCGGGCAGACGAAGAGAGGGCGCAGATATCCTCTCCGTCA
TGGTCACCCTCTGCTGTGCGGCTAGACGGAGGAGTGGATGCGAGCGCTGC
CAAATCTGATAGAAGCCTTGCTTCCTCGGTTGTGTGTGACACTAAGCGGG
CGAACGTGGGCGACGACAACGGTGGTGGTCCTGAGCTGTCTTCGAGCGAG
ATGATAGCCGACGATGGCTTTGCGTGTGCTGCCCCCAATTCTTCAAGTCC
TTCATCATCGGGAGAAGTTGTTGGAGGCGAGGTTTTTGTGGGTGGTCTTC
GGCTAGGGGACCACCCCACGACCGACAGAGGTGCGGACCGGCGAGGTCTG
CAGCACACTTCAGGGTATCCGATGGCGATGTCATCAACTTCGTTTGTTGC
GGGGCATGCGGCGGCCGTTTCTGCGGTTCACGCAAGGGCAGGCGTGGAGA
TCGGTGGAAGAGGGGAAACCGGGGGCGAAATCCAGGGTACTCCGCAACAA
TCTCCATTGTCAGTGGAGGCGGAGTTGGGTGCGGTGGAATCATCAATCTC
TGCGCCGTGGCAAGCGAGGTATGAACAGGAAAATCTTCCGTCGCAGAGAA
AATATCCTGTTGTTTGCCAGGTCCCGGACGGTCGAGACCGTGCGGCTGCA
GCGTCGAGGGAAGATCGAAGAGAGATGGATACGGATTGATTTTGTATTCT
CAGTCGTGGGGTCATAATAGACGTTGGACAAGGCATTTCTCGGGGAAGAA
TCTTGCTTCTGGCCACGATGCGCGTCTTGTCTGAGCAAACAGTGTCAGAA
GCAACTGTGTGAGCTCAACCGGTAGCGAAGAACCAGTCTAGACGTTTCAA
TGTGCATACATTTGTGTGTATGTCATGACCGCTAGTTTTGACAAACCTCG
TTCCACAAACTGTTCAAACTACCTTTCCTACTGAAGTAAACACGATACAG
TGCCTGCGTACAAGTCCGCATATTTA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig10638:5582..7957+

>mRNA_F-distichus_contig10638.544.1 ID=mRNA_F-distichus_contig10638.544.1|Name=mRNA_F-distichus_contig10638.544.1|organism=Fucus distichus monoicous|type=CDS|length=2610bp|location=Sequence derived from alignment at F-distichus_contig10638:5582..7957+ (Fucus distichus monoicous)
ATGACATTGCAGCGTCGTCAGGAGATGCAAGATCGGCGCGTTTCACCCTG
GCGATCGTCCGTGTCGGCGACGCAATGCAGCCCCTTTTCGTCTATGCCTC
CGCCACCGCCATCGTCGCCGTCGCCGCCATCGCCGCCATCGCTACTGCCT
GGAACGCCGAATGCCGCATCAAGAGAAAGGTCCCTCGGGTACGGGGATGG
CACTGGTGTTCTTCCATCGTCGTCGTCCCCCTCTCCCATTCCGAGAACCG
GACAAGCCGAACAACCGGTGTTAACCGCTGTCCCTCCTCCAGCTGAAACC
AGCGACTGTAACGATAACGGCGGTGGCGTTCGAGGTTATTCAGGGAGTGG
CGCGGTTGGAACGGCAATTACGATCGCGGTGCACAACGCTGGGAGGGACG
GGCTTAGCAGTAAAGGCGATGGCGGTGGAGGCGGCGTCCATGTTTCGAGC
ATGTCAGGGGGCGCTTCAAGCTCCATAACAGACATGGTGGACGCCGCTAC
GGCGAACCTCACGAAATCGTCCACAATAGTGGGATACTCGAGCATGATTT
CTGGGTTGGCAAGGAAACCGGTGAATGTCAGTGGTGGCGTTCTTGGCAGC
GGTTGTGGGGTAGGAGTATGCGGCGAGCGGGCAGACGAAGAGAGGGCGCA
GATATCCTCTCCGTCATGGTCACCCTCTGCTGTGCGGCTAGACGGAGGAG
TGGATGCGAGCGCTGCCAAATCTGATAGAAGCCTTGCTTCCTCGGTTGTG
TGTGACACTAAGCGGGCGAACGTGGGCGACGACAACGGTGGTGGTCCTGA
GCTGTCTTCGAGCGAGATGATAGCCGACGATGGCTTTGCGTGTGCTGCCC
CCAATTCTTCAAGTCCTTCATCATCGGGAGAAGTTGTTGGAGGCGAGGTT
TTTGTGGGTGGTCTTCGGCTAGGGGACCACCCCACGACCGACAGAGGTGC
GGACCGGCGAGGTCTGCAGCACACTTCAGGGTATCCGATGGCGATGTCAT
CAACTTCGTTTGTTGCGGGGCATGCGGCGGCCGTTTCTGCGGTTCACGCA
AGGGCAGGCGTGGAGATCGGTGGAAGAGGGGAAACCGGGGGCGAAATCCA
GGGTACTCCGCAACAATCTCCATTGTCAGTGGAGGCGGAGTTGGGTGCGG
TGGAATCATCAATCTCTGCGCCGTGGCAAGCGAGGTATGAACAGGAAAAT
CTTCCGTCGCAGAGAAAATATCCTGTTGTTTGCCAGGTCCCGGACGGTCG
AGACCGTGCGGCTGCAGCGTCGAGGGAAGATCGAAGAGAGATGGATACGG
ATTGAATGACATTGCAGCGTCGTCAGGAGATGCAAGATCGGCGCGTTTCA
CCCTGGCGATCGTCCGTGTCGGCGACGCAATGCAGCCCCTTTTCGTCTAT
GCCTCCGCCACCGCCATCGTCGCCGTCGCCGCCATCGCCGCCATCGCTAC
TGCCTGGAACGCCGAATGCCGCATCAAGAGAAAGGTCCCTCGGGTACGGG
GATGGCACTGGTGTTCTTCCATCGTCGTCGTCCCCCTCTCCCATTCCGAG
AACCGGACAAGCCGAACAACCGGTGTTAACCGCTGTCCCTCCTCCAGCTG
AAACCAGCGACTGTAACGATAACGGCGGTGGCGTTCGAGGTTATTCAGGG
AGTGGCGCGGTTGGAACGGCAATTACGATCGCGGTGCACAACGCTGGGAG
GGACGGGCTTAGCAGTAAAGGCGATGGCGGTGGAGGCGGCGTCCATGTTT
CGAGCATGTCAGGGGGCGCTTCAAGCTCCATAACAGACATGGTGGACGCC
GCTACGGCGAACCTCACGAAATCGTCCACAATAGTGGGATACTCGAGCAT
GATTTCTGGGTTGGCAAGGAAACCGGTGAATGTCAGTGGTGGCGTTCTTG
GCAGCGGTTGTGGGGTAGGAGTATGCGGCGAGCGGGCAGACGAAGAGAGG
GCGCAGATATCCTCTCCGTCATGGTCACCCTCTGCTGTGCGGCTAGACGG
AGGAGTGGATGCGAGCGCTGCCAAATCTGATAGAAGCCTTGCTTCCTCGG
TTGTGTGTGACACTAAGCGGGCGAACGTGGGCGACGACAACGGTGGTGGT
CCTGAGCTGTCTTCGAGCGAGATGATAGCCGACGATGGCTTTGCGTGTGC
TGCCCCCAATTCTTCAAGTCCTTCATCATCGGGAGAAGTTGTTGGAGGCG
AGGTTTTTGTGGGTGGTCTTCGGCTAGGGGACCACCCCACGACCGACAGA
GGTGCGGACCGGCGAGGTCTGCAGCACACTTCAGGGTATCCGATGGCGAT
GTCATCAACTTCGTTTGTTGCGGGGCATGCGGCGGCCGTTTCTGCGGTTC
ACGCAAGGGCAGGCGTGGAGATCGGTGGAAGAGGGGAAACCGGGGGCGAA
ATCCAGGGTACTCCGCAACAATCTCCATTGTCAGTGGAGGCGGAGTTGGG
TGCGGTGGAATCATCAATCTCTGCGCCGTGGCAAGCGAGGTATGAACAGG
AAAATCTTCCGTCGCAGAGAAAATATCCTGTTGTTTGCCAGGTCCCGGAC
GGTCGAGACCGTGCGGCTGCAGCGTCGAGGGAAGATCGAAGAGAGATGGA
TACGGATTGA
back to top