mRNA_F-distichus_contig1063.536.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1063.536.1
Unique NamemRNA_F-distichus_contig1063.536.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1063.536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1063contigF-distichus_contig1063:9921..11707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size527
Cds size525
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1063.536.1prot_F-distichus_contig1063.536.1Fucus distichus monoicouspolypeptideF-distichus_contig1063 9922..11707 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928990.2974765-UTR-F-distichus_contig1063:9920..99211622928990.2974765-UTR-F-distichus_contig1063:9920..9921Fucus distichus monoicousUTRF-distichus_contig1063 9921..9921 +
1690885094.4084964-UTR-F-distichus_contig1063:9920..99211690885094.4084964-UTR-F-distichus_contig1063:9920..9921Fucus distichus monoicousUTRF-distichus_contig1063 9921..9921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928990.3259342-CDS-F-distichus_contig1063:9921..99721622928990.3259342-CDS-F-distichus_contig1063:9921..9972Fucus distichus monoicousCDSF-distichus_contig1063 9922..9972 +
1690885094.4187593-CDS-F-distichus_contig1063:9921..99721690885094.4187593-CDS-F-distichus_contig1063:9921..9972Fucus distichus monoicousCDSF-distichus_contig1063 9922..9972 +
1622928990.3479393-CDS-F-distichus_contig1063:10981..114251622928990.3479393-CDS-F-distichus_contig1063:10981..11425Fucus distichus monoicousCDSF-distichus_contig1063 10982..11425 +
1690885094.4383175-CDS-F-distichus_contig1063:10981..114251690885094.4383175-CDS-F-distichus_contig1063:10981..11425Fucus distichus monoicousCDSF-distichus_contig1063 10982..11425 +
1622928990.3837252-CDS-F-distichus_contig1063:11677..117071622928990.3837252-CDS-F-distichus_contig1063:11677..11707Fucus distichus monoicousCDSF-distichus_contig1063 11678..11707 +
1690885094.450418-CDS-F-distichus_contig1063:11677..117071690885094.450418-CDS-F-distichus_contig1063:11677..11707Fucus distichus monoicousCDSF-distichus_contig1063 11678..11707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1063.536.1

>prot_F-distichus_contig1063.536.1 ID=prot_F-distichus_contig1063.536.1|Name=mRNA_F-distichus_contig1063.536.1|organism=Fucus distichus monoicous|type=polypeptide|length=175bp
MVTSERIQARELKKREVTERTAKEDLDRCTEKERERERCGRQQQGRDAKS
GEIKKLKRSSSEPPASSKAVGPCEFRASHAKRPKSGASTREKVKTHNPSL
KKVSKFPSIRAINNNIMASSDKTRKPVSNLNQKSRGNLGLRPPMKAESKF
GGKATKLKSSRKPKKVQLTKNPKVV
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mRNA from alignment at F-distichus_contig1063:9921..11707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1063.536.1 ID=mRNA_F-distichus_contig1063.536.1|Name=mRNA_F-distichus_contig1063.536.1|organism=Fucus distichus monoicous|type=mRNA|length=1787bp|location=Sequence derived from alignment at F-distichus_contig1063:9921..11707+ (Fucus distichus monoicous)
GATGGTCACATCGGAAAGGATACAAGCCAGAGAGCTTAAAAAACGAGAAG
TGGTGAGCTCCTTAACCCGTTGTCGTGACCGATTTTGCTGACACTGGAGG
TTTGAGGCAGTTCGAGTTTAAGAGATCGGCGGTGGTCAGCCAGTGGCAAG
TCAAAACTACCACTGTAAAGCATTATAGTATAGCTACTCGTACAGAATGC
ACTGCTGCAGTAGAGGTATCCAATGTCATCACGTTCACGTTCAGCAGAAT
ACCCAAGAAAGAAGAATTTGCCCACCACTACTAATACTTGTCCACCAGTG
CTTGTGCACCAGTAGAGCCTGGTACATTAGTCTACAACGCGCAAATAAAT
CTCTCTCAACGGAAAGTCCCCGAAGCGAGACCTGGGTCGCTTTTGTATGA
TACTGGCAGCTTCTGGCTGGTCCGCGCACATCCGGTCTAAGGACAATGGA
TACAGTATGCCGCCGGGGCATCTCTTTGTGAGCTATTAATCTATATGGGT
ATAGCTACTTCGTTATAGAACGTTCTGAGAGTATCACATGCCTGGTATTC
GAGTTTCGAGTTCTAACTGTCTGTATCTGTGATGAGCGTGGTCACACTAG
TGCTACGGAAGTTCAACGCGGAGGTTTACACCGCAGAAGGAAGGTGGAGA
AATCCTGTTTGACCTTCCTCCTGTGTGGCCCCGGCTGGTGCGTCCACAAG
TCTGACGTCTAAAATAAATGGGATGACAACACACACACACACACACACAC
ACACACATACACTGGGCCTCGCAGATATATCGTCCAGAATCAGTAATGAT
TCCCCCCTTTCTTTCTACTTGTAGGCTCACGGACCTCTAGCAAACCAACT
AATATACTGCAGCTACAGCAGTACGTGTACAGCTGAGAGATATCAGACTC
GGACGTGGGTGCCAGACACCGTCAGGGTTGCCCTAAACTACTCGAAATTT
TTCGAGGGGGGGGAGCTTGCCCGCTGCAACATGCTACCTCATCTGTTCTG
GTACATGTTGGATATCATTCGACTTCGACAATGATAATTCGGTAAACTCA
TCCGCCAACAGACTGAGCGAACAGCAAAGGAGGACCTTGATCGCTGCACG
GAGAAGGAGCGCGAGCGTGAGAGGTGTGGTCGTCAGCAACAGGGCCGGGA
CGCCAAGTCCGGAGAGATCAAGAAGCTTAAGCGATCTTCCTCAGAACCGC
CTGCTTCGTCAAAAGCGGTCGGTCCGTGCGAGTTTAGAGCTTCGCATGCC
AAGCGGCCGAAATCGGGTGCCAGTACCCGCGAGAAGGTAAAAACGCACAA
TCCAAGTCTCAAGAAAGTATCCAAGTTTCCTTCTATTCGTGCTATTAATA
ATAACATTATGGCCAGCAGTGACAAGACCAGAAAGCCGGTCTCAAATTTG
AATCAGAAGTCTCGAGGCAACCTCGGGCTACGGCCTCCAATGAAGGCCGA
AAGCAAATTTGGCGGGAAGGCCACGAAACTGAAGTCCTCGAGGAAACCGA
AAAAGGTGCGCATTCTCCTGCTTTATACTGTATGTATGTCTCTTTTTGCC
CAACTGCCAAGGTTACAGCAATAGGCTCTAGAACTCTACTGGTACAAGAT
ACTCAGTGCTTTGTCTTTTGTCTATTAATAGTGCGATCCTGCATTCTGTT
TTTTACCACAACCAGCAGGTACTGTACTGCACTATAATAGAGCACTACTG
TTTTTAGCGCCAGTACAACAAAACCTCTCGATGCACGTCGGGAAATACTG
GCTATAGGTACAGCTGACGAAGAATCCCAAGGTTGTT
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Coding sequence (CDS) from alignment at F-distichus_contig1063:9921..11707+

>mRNA_F-distichus_contig1063.536.1 ID=mRNA_F-distichus_contig1063.536.1|Name=mRNA_F-distichus_contig1063.536.1|organism=Fucus distichus monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at F-distichus_contig1063:9921..11707+ (Fucus distichus monoicous)
ATGGTCACATCGGAAAGGATACAAGCCAGAGAGCTTAAAAAACGAGAAGT
GATGGTCACATCGGAAAGGATACAAGCCAGAGAGCTTAAAAAACGAGAAG
TGACTGAGCGAACAGCAAAGGAGGACCTTGATCGCTGCACGGAGAAGGAG
CGCGAGCGTGAGAGGTGTGGTCGTCAGCAACAGGGCCGGGACGCCAAGTC
CGGAGAGATCAAGAAGCTTAAGCGATCTTCCTCAGAACCGCCTGCTTCGT
CAAAAGCGGTCGGTCCGTGCGAGTTTAGAGCTTCGCATGCCAAGCGGCCG
AAATCGGGTGCCAGTACCCGCGAGAAGGTAAAAACGCACAATCCAAGTCT
CAAGAAAGTATCCAAGTTTCCTTCTATTCGTGCTATTAATAATAACATTA
TGGCCAGCAGTGACAAGACCAGAAAGCCGGTCTCAAATTTGAATCAGAAG
TCTCGAGGCAACCTCGGGCTACGGCCTCCAATGAAGGCCGAAAGCAAATT
TGGCGGGAAGGCCACGAAACTGAAGTCCTCGAGGAAACCGAAAAAGACTG
AGCGAACAGCAAAGGAGGACCTTGATCGCTGCACGGAGAAGGAGCGCGAG
CGTGAGAGGTGTGGTCGTCAGCAACAGGGCCGGGACGCCAAGTCCGGAGA
GATCAAGAAGCTTAAGCGATCTTCCTCAGAACCGCCTGCTTCGTCAAAAG
CGGTCGGTCCGTGCGAGTTTAGAGCTTCGCATGCCAAGCGGCCGAAATCG
GGTGCCAGTACCCGCGAGAAGGTAAAAACGCACAATCCAAGTCTCAAGAA
AGTATCCAAGTTTCCTTCTATTCGTGCTATTAATAATAACATTATGGCCA
GCAGTGACAAGACCAGAAAGCCGGTCTCAAATTTGAATCAGAAGTCTCGA
GGCAACCTCGGGCTACGGCCTCCAATGAAGGCCGAAAGCAAATTTGGCGG
GAAGGCCACGAAACTGAAGTCCTCGAGGAAACCGAAAAAGGTACAGCTGA
CGAAGAATCCCAAGGTTGTTGTACAGCTGACGAAGAATCCCAAGGTTGTT
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