mRNA_F-distichus_contig106228.531.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106228.531.1
Unique NamemRNA_F-distichus_contig106228.531.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106228.531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106228contigF-distichus_contig106228:596..945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size352
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.8539934-CDS-F-distichus_contig106228:595..9431622928989.8539934-CDS-F-distichus_contig106228:595..943Fucus distichus monoicousCDSF-distichus_contig106228 596..943 +
1690885094.1854768-CDS-F-distichus_contig106228:595..9431690885094.1854768-CDS-F-distichus_contig106228:595..943Fucus distichus monoicousCDSF-distichus_contig106228 596..943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106228.531.1prot_F-distichus_contig106228.531.1Fucus distichus monoicouspolypeptideF-distichus_contig106228 596..943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106228.531.1

>prot_F-distichus_contig106228.531.1 ID=prot_F-distichus_contig106228.531.1|Name=mRNA_F-distichus_contig106228.531.1|organism=Fucus distichus monoicous|type=polypeptide|length=116bp
CYRYSSGSSGTRELGARCTCACTNSWDASLLSANSRYEFAFYKVLGTNRG
CRFVRETRRVWGTERTEAGSRRSSENFNSGRRNGTIIKREVSRRKERGFG
ALTARIRNSQEPTSNR
back to top

mRNA from alignment at F-distichus_contig106228:596..945+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106228.531.1 ID=mRNA_F-distichus_contig106228.531.1|Name=mRNA_F-distichus_contig106228.531.1|organism=Fucus distichus monoicous|type=mRNA|length=350bp|location=Sequence derived from alignment at F-distichus_contig106228:596..945+ (Fucus distichus monoicous)
TGTTATCGGTATTCGAGTGGGTCATCTGGAACGAGAGAGCTTGGGGCAAG
ATGCACGTGTGCTTGTACGAATTCGTGGGATGCAAGTTTACTGAGTGCTA
ATTCGCGGTACGAATTCGCGTTTTACAAGGTACTCGGGACTAATCGAGGA
TGTAGGTTTGTACGAGAAACGCGCCGCGTGTGGGGAACGGAGAGAACAGA
GGCTGGTAGTCGTCGAAGCAGTGAGAATTTCAACTCAGGGCGAAGAAATG
GTACTATCATCAAACGAGAGGTCAGTAGAAGAAAGGAACGAGGTTTTGGA
GCCCTGACAGCGAGAATTCGCAATTCACAGGAACCCACAAGCAACCGAAC
back to top

Coding sequence (CDS) from alignment at F-distichus_contig106228:596..945+

>mRNA_F-distichus_contig106228.531.1 ID=mRNA_F-distichus_contig106228.531.1|Name=mRNA_F-distichus_contig106228.531.1|organism=Fucus distichus monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at F-distichus_contig106228:596..945+ (Fucus distichus monoicous)
TGTTATCGGTATTCGAGTGGGTCATCTGGAACGAGAGAGCTTGGGGCAAG
ATGCACGTGTGCTTGTACGAATTCGTGGGATGCAAGTTTACTGAGTGCTA
ATTCGCGGTACGAATTCGCGTTTTACAAGGTACTCGGGACTAATCGAGGA
TGTAGGTTTGTACGAGAAACGCGCCGCGTGTGGGGAACGGAGAGAACAGA
GGCTGGTAGTCGTCGAAGCAGTGAGAATTTCAACTCAGGGCGAAGAAATG
GTACTATCATCAAACGAGAGGTCAGTAGAAGAAAGGAACGAGGTTTTGGA
GCCCTGACAGCGAGAATTCGCAATTCACAGGAACCCACAAGCAACCGATG
TTATCGGTATTCGAGTGGGTCATCTGGAACGAGAGAGCTTGGGGCAAGAT
GCACGTGTGCTTGTACGAATTCGTGGGATGCAAGTTTACTGAGTGCTAAT
TCGCGGTACGAATTCGCGTTTTACAAGGTACTCGGGACTAATCGAGGATG
TAGGTTTGTACGAGAAACGCGCCGCGTGTGGGGAACGGAGAGAACAGAGG
CTGGTAGTCGTCGAAGCAGTGAGAATTTCAACTCAGGGCGAAGAAATGGT
ACTATCATCAAACGAGAGGTCAGTAGAAGAAAGGAACGAGGTTTTGGAGC
CCTGACAGCGAGAATTCGCAATTCACAGGAACCCACAAGCAACCGA
back to top