mRNA_F-distichus_contig106219.530.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106219.530.1
Unique NamemRNA_F-distichus_contig106219.530.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig106219.530.1 vs. uniprot
Match: D8LGI7_ECTSI (TIP120 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI7_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.590e-48
Identity = 81/91 (89.01%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:   10 VQTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLSQIINVALQYIKYDPNYSYGDE 282
            +QTIGTISRTVGYRLGRHLDSIVPLF +FCGDP+DES HTEAADELRENCFQGFESFV+RCPREVTPHLS II+V+LQYIKYDPNYSYGD+
Sbjct:  128 IQTIGTISRTVGYRLGRHLDSIVPLFFQFCGDPEDESLHTEAADELRENCFQGFESFVMRCPREVTPHLSGIISVSLQYIKYDPNYSYGDD 218
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BLAST of mRNA_F-distichus_contig106219.530.1 vs. uniprot
Match: A0A835Z0R5_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R5_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.760e-41
Identity = 68/91 (74.73%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:   10 VQTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLSQIINVALQYIKYDPNYSYGDE 282
            +Q IGTISRTVG+RLGRHLD+IVPLFLKF GD DDE  HTEAA ELR+NCFQGFESFV+RCPREVTPHL +I++V L++ +YDPNYSY  +
Sbjct:  227 IQAIGTISRTVGFRLGRHLDAIVPLFLKFIGDMDDEDMHTEAASELRDNCFQGFESFVLRCPREVTPHLDKILDVVLRFARYDPNYSYDSD 317
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BLAST of mRNA_F-distichus_contig106219.530.1 vs. uniprot
Match: A0A7S2CTN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTN9_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.910e-36
Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:   10 VQTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLSQIINVALQYIKYDPNYSYGDE 282
            +QT+GT+SRTVGYRLGRHLDSIVPLFLKF GDP+DE+  TE  +ELRE C QGFESFV+RC RE+ PHL  I   +L ++K+DPNY+YGD+
Sbjct:   20 IQTVGTVSRTVGYRLGRHLDSIVPLFLKFVGDPEDEATQTEQHNELRETCLQGFESFVLRCNREIQPHLESITTTSLLFMKFDPNYNYGDD 110
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BLAST of mRNA_F-distichus_contig106219.530.1 vs. uniprot
Match: A0A485LBH5_9STRA (Aste57867_18631 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBH5_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.780e-36
Identity = 62/91 (68.13%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:   10 VQTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLSQIINVALQYIKYDPNYSYGDE 282
            +QTIGT+SRTVG+RLGRHL +IVPLFL FCG PDDES   +A++ELRENCFQG E+FV+RC  E+TPH + I++VA+ + KYDPNY YGDE
Sbjct:  229 IQTIGTLSRTVGHRLGRHLPTIVPLFLTFCGTPDDESLQNDASNELRENCFQGLEAFVLRCHAEITPHTTDILSVAMAFAKYDPNYMYGDE 319
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BLAST of mRNA_F-distichus_contig106219.530.1 vs. uniprot
Match: A0A7S2FNG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FNG9_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.660e-35
Identity = 60/91 (65.93%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:   10 VQTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLSQIINVALQYIKYDPNYSYGDE 282
            +QT+GTISR VGYRLGRHL+++VPLF+ F GDP+DESQ T+   ELRE C QGFESFV+RC RE+TPH++ II VA+ ++KYDPNY+YG +
Sbjct:  226 IQTVGTISRVVGYRLGRHLNTVVPLFVTFLGDPEDESQQTDTYHELRETCLQGFESFVLRCNREITPHVTNIITVAMAFMKYDPNYNYGSD 316
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BLAST of mRNA_F-distichus_contig106219.530.1 vs. uniprot
Match: A0A6G0WW89_9STRA (TIP120 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW89_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.080e-35
Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:   10 VQTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLSQIINVALQYIKYDPNYSYGDE 282
            +QTIGT+SR VG+RLGRHL +IVPLFLKFCG  DDES   +A++ELRENCFQG E+FV+RC  E+TPH + I+ VA+ + KYDPNY YGDE
Sbjct:  229 IQTIGTLSRAVGHRLGRHLPTIVPLFLKFCGSTDDESMQNDASNELRENCFQGLEAFVLRCHAEITPHTTDILAVAMSFAKYDPNYMYGDE 319
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BLAST of mRNA_F-distichus_contig106219.530.1 vs. uniprot
Match: A0A024TMU3_9STRA (TIP120 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TMU3_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.200e-35
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:   10 VQTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLSQIINVALQYIKYDPNYSYGDE 282
            +QTIGT+SRTVG+RLGRHL +IVPLFL FCG PDDES   + A+ELRENCFQG E+FV RC  E+ PH + I++VA+ + KYDPNY YGD+
Sbjct:  231 IQTIGTLSRTVGHRLGRHLSTIVPLFLTFCGSPDDESMQNDTANELRENCFQGLEAFVTRCHTEIAPHTTDILSVAIAFSKYDPNYMYGDD 321
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BLAST of mRNA_F-distichus_contig106219.530.1 vs. uniprot
Match: A0A3R6ZTI8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZTI8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.300e-35
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:   10 VQTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLSQIINVALQYIKYDPNYSYGDE 282
            +QTIGT+SRTVG+RLGRHL +IVPLFL FCG PDDES   + A+ELRENCFQG E+FV RC  E+ PH + I++VA+ + KYDPNY YGD+
Sbjct:  235 IQTIGTLSRTVGHRLGRHLSTIVPLFLTFCGSPDDESMQNDTANELRENCFQGLEAFVTRCHTEIAPHTTDILSVAIAFSKYDPNYMYGDD 325
[Close]
BLAST of mRNA_F-distichus_contig106219.530.1 vs. uniprot
Match: K3X436_GLOUD (TIP120 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X436_GLOUD)

HSP 1 Score: 136 bits (343), Expect = 5.730e-35
Identity = 56/90 (62.22%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:   10 VQTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLSQIINVALQYIKYDPNYSYGD 279
            +QTIGT+SRT G+RLG HL++I+P+ +KFCGDP+DES   EA+ ELRENCFQ FESFV+RC  E+TPH+  I+ + +++IKYDPNY+YG+
Sbjct:  229 IQTIGTLSRTAGHRLGHHLNAIIPILVKFCGDPEDESLQNEASSELRENCFQAFESFVIRCHNEITPHVESILTLVMEFIKYDPNYNYGE 318
[Close]
BLAST of mRNA_F-distichus_contig106219.530.1 vs. uniprot
Match: A0A397B2C2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B2C2_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.440e-34
Identity = 59/91 (64.84%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:   10 VQTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLSQIINVALQYIKYDPNYSYGDE 282
            +QTIGT+SRTVG+RLGRHL +IVPLFL FCG PD+E+   + A+ELRENCFQG E+FV+RC  E+TPH + I++VA+ + KYDPNY YGD+
Sbjct:  193 IQTIGTLSRTVGHRLGRHLPTIVPLFLTFCGTPDNEAMQNDTANELRENCFQGLEAFVLRCHAEITPHTTDILSVAIAFSKYDPNYMYGDD 283
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106219.530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI7_ECTSI2.590e-4889.01TIP120 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z0R5_9STRA1.760e-4174.73Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
A0A7S2CTN9_9STRA1.910e-3668.13Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A485LBH5_9STRA4.780e-3668.13Aste57867_18631 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2FNG9_9STRA1.660e-3565.93Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6G0WW89_9STRA3.080e-3567.03TIP120 domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A024TMU3_9STRA4.200e-3565.93TIP120 domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A3R6ZTI8_9STRA4.300e-3565.93Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
K3X436_GLOUD5.730e-3562.22TIP120 domain-containing protein n=1 Tax=Globispor... [more]
A0A397B2C2_9STRA1.440e-3464.84Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106219contigF-distichus_contig106219:719..1654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.6
Seed ortholog evalue3.4e-42
Seed eggNOG ortholog2880.D8LGI7
Preferred nameCAND1
KEGG koko:K09490,ko:K17263
KEGG TC1.A.33
KEGG Pathwayko03060,ko04141,ko04918,ko05020,map03060,map04141,map04918,map05020
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000909,GO:0003002,GO:0003006,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009404,GO:0009653,GO:0009712,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009987,GO:0010033,GO:0010051,GO:0010228,GO:0010265,GO:0016020,GO:0016043,GO:0016567,GO:0016999,GO:0017144,GO:0018904,GO:0018940,GO:0018958,GO:0019538,GO:0019748,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0030312,GO:0030435,GO:0030582,GO:0030584,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034293,GO:0036211,GO:0042221,GO:0042537,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043385,GO:0043412,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050790,GO:0050896,GO:0051321,GO:0051704,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0072490,GO:0075259,GO:1900570,GO:1900588,GO:1900591,GO:1900797,GO:1901360,GO:1901564,GO:1901615,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc.SCF complex assembly
EggNOG OGsKOG1824@1,KOG1824@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131,ko04147
Exons2
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.7750602-CDS-F-distichus_contig106219:718..9011622928989.7750602-CDS-F-distichus_contig106219:718..901Fucus distichus monoicousCDSF-distichus_contig106219 719..901 -
1690885094.1561162-CDS-F-distichus_contig106219:718..9011690885094.1561162-CDS-F-distichus_contig106219:718..901Fucus distichus monoicousCDSF-distichus_contig106219 719..901 -
1622928989.7904205-CDS-F-distichus_contig106219:1489..16541622928989.7904205-CDS-F-distichus_contig106219:1489..1654Fucus distichus monoicousCDSF-distichus_contig106219 1490..1654 -
1690885094.1747353-CDS-F-distichus_contig106219:1489..16541690885094.1747353-CDS-F-distichus_contig106219:1489..1654Fucus distichus monoicousCDSF-distichus_contig106219 1490..1654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106219.530.1prot_F-distichus_contig106219.530.1Fucus distichus monoicouspolypeptideF-distichus_contig106219 719..1654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106219.530.1

>prot_F-distichus_contig106219.530.1 ID=prot_F-distichus_contig106219.530.1|Name=mRNA_F-distichus_contig106219.530.1|organism=Fucus distichus monoicous|type=polypeptide|length=116bp
RCRVQTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELR
ENCFQGFESFVVRCPREVTPHLSQIINVALQYIKYDPNYSYGDEDEGNGD
EDVDMDAEEEEEVHDA
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mRNA from alignment at F-distichus_contig106219:719..1654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106219.530.1 ID=mRNA_F-distichus_contig106219.530.1|Name=mRNA_F-distichus_contig106219.530.1|organism=Fucus distichus monoicous|type=mRNA|length=936bp|location=Sequence derived from alignment at F-distichus_contig106219:719..1654- (Fucus distichus monoicous)
CGCTGTCGTGTGCAGACCATAGGCACAATCAGCCGCACCGTGGGGTACCG
TCTGGGGAGGCACCTGGACTCCATCGTTCCGCTGTTCCTGAAGTTCTGCG
GCGATCCTGATGACGAGAGCCAGCACACGGAAGCCGCCGATGAGCTCAGG
GAGAACTGCTTCCAGGTGCCTTGTTTTGCTGCGTGTTTTTGTTTTTTTTT
CGAGACACGGGGAGTGGCAAAGTATAGTAGAGCGTTCTTTAGGGCTATTT
AGGTAGGTTTAGTTTTGGACGGGGGTGGTGATGAAATATCCAAATATTCC
TAAGCTTTTGAAAGCAAAGTTCCCTCTTTTTCGATGAAAGCCTCGAGATT
TTTTTTTAATAGAAAAAACGACGGTATTCGCATCAAAAGAAGTTCTCGAG
AACCGTAATCGCGCAGCGTTCTGTCATCGCCAACCTGTTATCCCCCCCTT
GGTCACCACGCTTGCAATCGTCGCGTCCTTTGGACTGCCAAGGTCAACAT
CCTCAGCCCGGCACGCGTCCGTGATTTTGCTGCTGTTTTAACACACACAC
AAACACACACATAAACACGTAAGATATATTTAGAAAATTACTTACGGCTG
TCGCTGTGACACCGATCCCGTCGTGTCATGACTGACGCATCCGTTCTTGA
TGCTCTAATTTTTAATTTTTCAACATACATAAATCTACACATATATATAT
ATATATATACATATATAATGTACGTTTTCGTGTTTGCCCTACCCAACCCA
CAGGGCTTCGAGTCCTTCGTGGTGAGGTGCCCCCGCGAGGTCACCCCGCA
CTTGAGCCAGATCATCAATGTAGCCCTACAGTATATCAAGTACGACCCCA
ACTACAGCTACGGCGACGAAGACGAGGGGAACGGTGACGAGGACGTGGAC
ATGGACGCCGAGGAGGAGGAAGAGGTACACGATGCC
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Coding sequence (CDS) from alignment at F-distichus_contig106219:719..1654-

>mRNA_F-distichus_contig106219.530.1 ID=mRNA_F-distichus_contig106219.530.1|Name=mRNA_F-distichus_contig106219.530.1|organism=Fucus distichus monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at F-distichus_contig106219:719..1654- (Fucus distichus monoicous)
CGCTGTCGTGTGCAGACCATAGGCACAATCAGCCGCACCGTGGGGTACCG
TCTGGGGAGGCACCTGGACTCCATCGTTCCGCTGTTCCTGAAGTTCTGCG
GCGATCCTGATGACGAGAGCCAGCACACGGAAGCCGCCGATGAGCTCAGG
GAGAACTGCTTCCAGCGCTGTCGTGTGCAGACCATAGGCACAATCAGCCG
CACCGTGGGGTACCGTCTGGGGAGGCACCTGGACTCCATCGTTCCGCTGT
TCCTGAAGTTCTGCGGCGATCCTGATGACGAGAGCCAGCACACGGAAGCC
GCCGATGAGCTCAGGGAGAACTGCTTCCAGGGCTTCGAGTCCTTCGTGGT
GAGGTGCCCCCGCGAGGTCACCCCGCACTTGAGCCAGATCATCAATGTAG
CCCTACAGTATATCAAGTACGACCCCAACTACAGCTACGGCGACGAAGAC
GAGGGGAACGGTGACGAGGACGTGGACATGGACGCCGAGGAGGAGGAAGA
GGTACACGATGCCGGCTTCGAGTCCTTCGTGGTGAGGTGCCCCCGCGAGG
TCACCCCGCACTTGAGCCAGATCATCAATGTAGCCCTACAGTATATCAAG
TACGACCCCAACTACAGCTACGGCGACGAAGACGAGGGGAACGGTGACGA
GGACGTGGACATGGACGCCGAGGAGGAGGAAGAGGTACACGATGCC
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