mRNA_F-distichus_contig106174.523.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106174.523.1
Unique NamemRNA_F-distichus_contig106174.523.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig106174.523.1 vs. uniprot
Match: A0A6H5KWJ9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWJ9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.170e-14
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:    1 NDLDHVLVFRGTKDWGDGLSDINLLSG-CAQHEYMFEAAVWSSQVMLFLDGK---------------GLKRFRVAGHSLGGAVAISVIILLHDISAT 243
            N +D+VL FRGT D  D L+D+ L+ G   QH+YM  A VW+ +V+LFL  +               GL RF V GHSLGG VA+ V++LLHDI  T
Sbjct:  112 NQVDYVLAFRGTADRRDALNDVLLVHGDFDQHKYMLNATVWALRVILFLSKQHDNGXXXXXXXXXXXGL-RFSVTGHSLGGTVAMGVMVLLHDIPTT 207
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106174.523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWJ9_9PHAE1.170e-1446.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106174contigF-distichus_contig106174:78..320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.8552675-CDS-F-distichus_contig106174:77..3201622928987.8552675-CDS-F-distichus_contig106174:77..320Fucus distichus monoicousCDSF-distichus_contig106174 78..320 +
1690885093.1845984-CDS-F-distichus_contig106174:77..3201690885093.1845984-CDS-F-distichus_contig106174:77..320Fucus distichus monoicousCDSF-distichus_contig106174 78..320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106174.523.1prot_F-distichus_contig106174.523.1Fucus distichus monoicouspolypeptideF-distichus_contig106174 78..320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106174.523.1

>prot_F-distichus_contig106174.523.1 ID=prot_F-distichus_contig106174.523.1|Name=mRNA_F-distichus_contig106174.523.1|organism=Fucus distichus monoicous|type=polypeptide|length=81bp
NDLDHVLVFRGTKDWGDGLSDINLLSGCAQHEYMFEAAVWSSQVMLFLDG
KGLKRFRVAGHSLGGAVAISVIILLHDISAT
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mRNA from alignment at F-distichus_contig106174:78..320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106174.523.1 ID=mRNA_F-distichus_contig106174.523.1|Name=mRNA_F-distichus_contig106174.523.1|organism=Fucus distichus monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at F-distichus_contig106174:78..320+ (Fucus distichus monoicous)
AATGACCTTGACCATGTTCTCGTCTTTCGGGGCACAAAGGATTGGGGAGA
CGGTCTCTCTGACATCAACCTCCTGTCTGGCTGCGCCCAACACGAGTACA
TGTTTGAAGCCGCGGTATGGTCGTCCCAGGTGATGCTTTTCTTGGACGGC
AAAGGGCTTAAGAGGTTTCGGGTTGCGGGGCACTCACTGGGCGGCGCTGT
GGCAATATCTGTAATCATCCTTCTCCATGATATCAGCGCCACC
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Coding sequence (CDS) from alignment at F-distichus_contig106174:78..320+

>mRNA_F-distichus_contig106174.523.1 ID=mRNA_F-distichus_contig106174.523.1|Name=mRNA_F-distichus_contig106174.523.1|organism=Fucus distichus monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at F-distichus_contig106174:78..320+ (Fucus distichus monoicous)
AATGACCTTGACCATGTTCTCGTCTTTCGGGGCACAAAGGATTGGGGAGA
CGGTCTCTCTGACATCAACCTCCTGTCTGGCTGCGCCCAACACGAGTACA
TGTTTGAAGCCGCGGTATGGTCGTCCCAGGTGATGCTTTTCTTGGACGGC
AAAGGGCTTAAGAGGTTTCGGGTTGCGGGGCACTCACTGGGCGGCGCTGT
GGCAATATCTGTAATCATCCTTCTCCATGATATCAGCGCCACCAATGACC
TTGACCATGTTCTCGTCTTTCGGGGCACAAAGGATTGGGGAGACGGTCTC
TCTGACATCAACCTCCTGTCTGGCTGCGCCCAACACGAGTACATGTTTGA
AGCCGCGGTATGGTCGTCCCAGGTGATGCTTTTCTTGGACGGCAAAGGGC
TTAAGAGGTTTCGGGTTGCGGGGCACTCACTGGGCGGCGCTGTGGCAATA
TCTGTAATCATCCTTCTCCATGATATCAGCGCCACC
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