mRNA_F-distichus_contig106098.521.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106098.521.1
Unique NamemRNA_F-distichus_contig106098.521.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig106098.521.1 vs. uniprot
Match: A0A6H5KPF6_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPF6_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 3.770e-63
Identity = 107/141 (75.89%), Postives = 118/141 (83.69%), Query Frame = 1 
Query:    1 WDAWLADDLEGAQAVIRCACAASEPVLAEELVVKAGFSCGVANEPTGDHAKAAASVYPNLVTAFSRKGRRGDAMRLLEAIAQGRLQVETAAMNRLLESFHRRRDLEAVFKVLDAMAAGGVDGDDETYEWLANAAVRGVEFV 423
            WDAWLA DL+GAQAV+RCACAASE   AEELV KAGFSCG  +E   +   AA SVYPNL+TAFSR G+RGDAMRLLEA+A  RL V+T A NRLL+ FH+RRDLEAVFKVLD MAA GVDGDDETYEWLANAAVRGV+FV
Sbjct:  279 WDAWLASDLDGAQAVVRCACAASEAAFAEELVAKAGFSCGGGDELAEEFVSAATSVYPNLITAFSRNGKRGDAMRLLEAMANARLPVKTPAANRLLQGFHKRRDLEAVFKVLDVMAAAGVDGDDETYEWLANAAVRGVDFV 419
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BLAST of mRNA_F-distichus_contig106098.521.1 vs. uniprot
Match: A0A836C8M6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.120e-18
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:  148 AKAAASVYPNLVTAFSRKGRRGDAMRLLEAIAQGRLQVETAAMNRLLESFHRRRDLEAVFKVLDAMAAGGVDGDDETYEWLANAAVRGVEFV 423
            A+A A++YP+L +A  R G R  A+  LE +A+GR+ +   A NRL+ +  RRRDL AVF VLDAM A  V  +D+TYE +ANAAVR VEFV
Sbjct:    8 AEAQAALYPSLASALFRAGARRRALAALEDMARGRVAISIDAANRLIRAAQRRRDLRAVFAVLDAMTAARVAPNDDTYEAVANAAVRSVEFV 99
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106098.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPF6_9PHAE3.770e-6375.89EngB-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A836C8M6_9STRA2.120e-1853.26P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106098contigF-distichus_contig106098:361..1902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue3.4e-52
Seed eggNOG ortholog2880.D7G7B8
KEGG koko:K03978
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTP binding
EggNOG OGsCOG0218@1,KOG2486@2759
Ec32 ortholog descriptionYihA4, YihA/EngB-like GTPase
Ec32 orthologEc-04_003410.1
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons4
Model size423
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106098.521.1prot_F-distichus_contig106098.521.1Fucus distichus monoicouspolypeptideF-distichus_contig106098 361..1902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.618766-CDS-F-distichus_contig106098:360..5011622928987.618766-CDS-F-distichus_contig106098:360..501Fucus distichus monoicousCDSF-distichus_contig106098 361..501 +
1690885093.0850902-CDS-F-distichus_contig106098:360..5011690885093.0850902-CDS-F-distichus_contig106098:360..501Fucus distichus monoicousCDSF-distichus_contig106098 361..501 +
1622928987.6810248-CDS-F-distichus_contig106098:707..8181622928987.6810248-CDS-F-distichus_contig106098:707..818Fucus distichus monoicousCDSF-distichus_contig106098 708..818 +
1690885093.097606-CDS-F-distichus_contig106098:707..8181690885093.097606-CDS-F-distichus_contig106098:707..818Fucus distichus monoicousCDSF-distichus_contig106098 708..818 +
1622928987.6975656-CDS-F-distichus_contig106098:1059..11371622928987.6975656-CDS-F-distichus_contig106098:1059..1137Fucus distichus monoicousCDSF-distichus_contig106098 1060..1137 +
1690885093.1054745-CDS-F-distichus_contig106098:1059..11371690885093.1054745-CDS-F-distichus_contig106098:1059..1137Fucus distichus monoicousCDSF-distichus_contig106098 1060..1137 +
1622928987.7144637-CDS-F-distichus_contig106098:1809..19021622928987.7144637-CDS-F-distichus_contig106098:1809..1902Fucus distichus monoicousCDSF-distichus_contig106098 1810..1902 +
1690885093.1134167-CDS-F-distichus_contig106098:1809..19021690885093.1134167-CDS-F-distichus_contig106098:1809..1902Fucus distichus monoicousCDSF-distichus_contig106098 1810..1902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106098.521.1

>prot_F-distichus_contig106098.521.1 ID=prot_F-distichus_contig106098.521.1|Name=mRNA_F-distichus_contig106098.521.1|organism=Fucus distichus monoicous|type=polypeptide|length=141bp
WDAWLADDLEGAQAVIRCACAASEPVLAEELVVKAGFSCGVANEPTGDHA
KAAASVYPNLVTAFSRKGRRGDAMRLLEAIAQGRLQVETAAMNRLLESFH
RRRDLEAVFKVLDAMAAGGVDGDDETYEWLANAAVRGVEFV
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mRNA from alignment at F-distichus_contig106098:361..1902+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106098.521.1 ID=mRNA_F-distichus_contig106098.521.1|Name=mRNA_F-distichus_contig106098.521.1|organism=Fucus distichus monoicous|type=mRNA|length=1542bp|location=Sequence derived from alignment at F-distichus_contig106098:361..1902+ (Fucus distichus monoicous)
TGGGATGCATGGCTAGCGGACGATCTCGAGGGAGCACAGGCGGTCATCCG
GTGTGCGTGCGCCGCGAGCGAGCCCGTCTTGGCGGAGGAGTTGGTAGTCA
AGGCAGGGTTCTCGTGCGGGGTGGCGAACGAGCCGACCGGGGTGAGGCTG
GGAGCACACCAAGTATTCGCGGTGCTCGCGCGTGTTACGTGCGTCTTGGG
GGGGCATGAGATTATCTCATTGCCTCGTCGCCGGCGCCACCACGGCGATC
GAGACCCCTTAATCCGCGTTCCCAGACGGTTCTATTCGAACAACAATGTA
GTCGATCTTACCAACCGCTCGCCGCGCGTGCGCTCACGCACGGACAGGAT
CACGCGAAAGCTGCCGCATCGGTTTACCCCAACCTCGTGACGGCGTTCTC
TAGGAAGGGCAGGCGCGGCGACGCCATGCGGCTGCTGGAGGCAATTGCCC
AGGGGCGGGTAAGTAAAAGTCGCAAATAATTGGTAAAAAAAAAACTTTGG
CTGGGCCCTGCGGTTGCAAGCCGCGTGTCCGGCCTCTGCAGATATATCCG
CGCTCCTCAAGAGCTAAAGTTGTTGACACGCCCGCGCCCGTACTAATCTC
GTAGTGGTCGATAAACCAGGAGAGCAAGTCCACGATCTGAGCATTTCATA
ACGCAAATATTCGTCGTGTGTCCGCGGCCCGCGCATCTAATCCATCCAGT
TACAAGTGGAGACCGCGGCGATGAACCGGTTGCTGGAGAGCTTCCACCGC
AGGCGTGACCTGGAGGCCGTGTTCAAGGTGCCGGAAAGGGTTGATCAGAG
AATCTCGCAAAATATCGCCGTCTTATGGAGCTGTTATAGTGTCCTTGCTT
CGCCGCCACCTTGTAGATAAGCACTTGTAACGGACTTAACTTTTTTTTTT
TGAGCGGCAAGCCTCATCTTCGCTCCCTGCTGTTTTGGAGGGCGGCGACC
GGAGCTCGCTCTCCCGAAGGGTGGGTTTGTGTTATCTCCCTACCACGAAG
GCCGTCCATCGAAACAAGAGTCGAATATACTCGACTTTGAAGGCGTTGCT
GCTGCTGTAGCATCGCGATCTTCCCCCCCCCAAAAAAAAAAAAACGAAAC
GGCCCCGTTGTAACCGAGGAAATATGAAAAAATCCTGGGGGACAACGGGG
AGGGTGGGGACGGTNNNNNNNNNNCAAGAAAGCCGGCCAACGAAAAAAAG
AGAAAAAAAAACAAAAATTGAAAGGAATAGAAACACCAAAAAAAACCCAA
TTTACCCCCCCCAAAAAAAAAAAAACGAAACGGCTACGTTGTAACCGAGG
AAATATGAAAATATCCTTGGTGACCACAGACAGTGTGGCAACGTTACAAT
GGGTTGAGATCGGTAACGTACCACATTTGAGGCTCATCGGCCGTAAGTGA
GAGGCAAGATTCAAGTGTCGAGACAACCTATTTATCTCCATCCTTTCAGG
TACTGGACGCCATGGCGGCTGGGGGTGTGGATGGAGATGACGAGACGTAC
GAGTGGCTGGCGAACGCGGCCGTCAGGGGGGTAGAGTTCGTA
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Coding sequence (CDS) from alignment at F-distichus_contig106098:361..1902+

>mRNA_F-distichus_contig106098.521.1 ID=mRNA_F-distichus_contig106098.521.1|Name=mRNA_F-distichus_contig106098.521.1|organism=Fucus distichus monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at F-distichus_contig106098:361..1902+ (Fucus distichus monoicous)
TGGGATGCATGGCTAGCGGACGATCTCGAGGGAGCACAGGCGGTCATCCG
GTGTGCGTGCGCCGCGAGCGAGCCCGTCTTGGCGGAGGAGTTGGTAGTCA
AGGCAGGGTTCTCGTGCGGGGTGGCGAACGAGCCGACCGGGTGGGATGCA
TGGCTAGCGGACGATCTCGAGGGAGCACAGGCGGTCATCCGGTGTGCGTG
CGCCGCGAGCGAGCCCGTCTTGGCGGAGGAGTTGGTAGTCAAGGCAGGGT
TCTCGTGCGGGGTGGCGAACGAGCCGACCGGGGATCACGCGAAAGCTGCC
GCATCGGTTTACCCCAACCTCGTGACGGCGTTCTCTAGGAAGGGCAGGCG
CGGCGACGCCATGCGGCTGCTGGAGGCAATTGCCCAGGGGCGGGATCACG
CGAAAGCTGCCGCATCGGTTTACCCCAACCTCGTGACGGCGTTCTCTAGG
AAGGGCAGGCGCGGCGACGCCATGCGGCTGCTGGAGGCAATTGCCCAGGG
GCGGTTACAAGTGGAGACCGCGGCGATGAACCGGTTGCTGGAGAGCTTCC
ACCGCAGGCGTGACCTGGAGGCCGTGTTCAAGTTACAAGTGGAGACCGCG
GCGATGAACCGGTTGCTGGAGAGCTTCCACCGCAGGCGTGACCTGGAGGC
CGTGTTCAAGGTACTGGACGCCATGGCGGCTGGGGGTGTGGATGGAGATG
ACGAGACGTACGAGTGGCTGGCGAACGCGGCCGTCAGGGGGGTAGAGTTC
GTAGTACTGGACGCCATGGCGGCTGGGGGTGTGGATGGAGATGACGAGAC
GTACGAGTGGCTGGCGAACGCGGCCGTCAGGGGGGTAGAGTTCGTA
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