mRNA_F-distichus_contig106092.519.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106092.519.1
Unique NamemRNA_F-distichus_contig106092.519.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig106092.519.1 vs. uniprot
Match: D8LD53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD53_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 8.270e-16
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 AEKAESRLATSMSTRGKRKLMGDTQWIRCQNCGKWRALLRSMDPSTYVGPG 153
            AEKA+S+LA SMSTRGKRK     QW+RCQNCGKWRALLR MD S ++G G
Sbjct:  173 AEKAKSKLAPSMSTRGKRKAPSQAQWVRCQNCGKWRALLRCMDASLFLGHG 223
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BLAST of mRNA_F-distichus_contig106092.519.1 vs. uniprot
Match: A0A6H5K0G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.260e-15
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 AEKAESRLATSMSTRGKRKLMGDTQWIRCQNCGKWRALLRSMDPSTYVGPG 153
            AEKA+S+LA SMSTRGKRK     QW+RCQNCGKWRALLR MD S ++G G
Sbjct:  359 AEKAKSKLAPSMSTRGKRKAPSQAQWVRCQNCGKWRALLRCMDASLFLGHG 409
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BLAST of mRNA_F-distichus_contig106092.519.1 vs. uniprot
Match: A0A7S2SHF1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHF1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.010e-7
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    4 EKAESRLATSMSTRGKRKLMGDTQWIRC--QNCGKWRALLRSMDPSTYV 144
            E AE+RL TS +TRGK++ + + +WI+C   NCGKWRAL RSMD ++ +
Sbjct:  157 EDAETRLPTSHATRGKKRPLSEQEWIQCCDPNCGKWRALHRSMDVNSLL 205
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BLAST of mRNA_F-distichus_contig106092.519.1 vs. uniprot
Match: A0A7S2B7X4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B7X4_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 7.270e-6
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   10 AESRLATSMSTRGKRKLMGDTQWIRC--QNCGKWRALLRSMDPSTYV 144
            AE RL TS STRGK++ + + ++I+C   NCGKWRAL RS+D  T  
Sbjct:   71 AEVRLPTSSSTRGKKRPLHEQEYIQCCDPNCGKWRALHRSLDSKTLA 117
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106092.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LD53_ECTSI8.270e-1670.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0G2_9PHAE1.260e-1570.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SHF1_9STRA2.010e-753.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2B7X4_9STRA7.270e-653.19Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106092contigF-distichus_contig106092:1195..1347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue5.6e-13
Seed eggNOG ortholog2880.D8LD53
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043565,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.CW-type Zinc Finger
EggNOG OGs2E11X@1,2S8EJ@2759
Ec32 ortholog descriptionCW-type zinc finger protein
Ec32 orthologEc-11_000500.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.472097-CDS-F-distichus_contig106092:1194..13471622928987.472097-CDS-F-distichus_contig106092:1194..1347Fucus distichus monoicousCDSF-distichus_contig106092 1195..1347 -
1690885092.9805808-CDS-F-distichus_contig106092:1194..13471690885092.9805808-CDS-F-distichus_contig106092:1194..1347Fucus distichus monoicousCDSF-distichus_contig106092 1195..1347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106092.519.1prot_F-distichus_contig106092.519.1Fucus distichus monoicouspolypeptideF-distichus_contig106092 1195..1347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106092.519.1

>prot_F-distichus_contig106092.519.1 ID=prot_F-distichus_contig106092.519.1|Name=mRNA_F-distichus_contig106092.519.1|organism=Fucus distichus monoicous|type=polypeptide|length=51bp
AEKAESRLATSMSTRGKRKLMGDTQWIRCQNCGKWRALLRSMDPSTYVGP
G
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mRNA from alignment at F-distichus_contig106092:1195..1347-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106092.519.1 ID=mRNA_F-distichus_contig106092.519.1|Name=mRNA_F-distichus_contig106092.519.1|organism=Fucus distichus monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at F-distichus_contig106092:1195..1347- (Fucus distichus monoicous)
GCGGAAAAGGCGGAATCGAGGCTGGCAACGTCCATGTCGACTCGTGGGAA
GCGCAAGCTGATGGGGGATACCCAATGGATACGTTGCCAGAACTGCGGAA
AGTGGAGGGCGCTGCTGAGGTCCATGGATCCTTCGACCTACGTTGGCCCC
GGC
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Coding sequence (CDS) from alignment at F-distichus_contig106092:1195..1347-

>mRNA_F-distichus_contig106092.519.1 ID=mRNA_F-distichus_contig106092.519.1|Name=mRNA_F-distichus_contig106092.519.1|organism=Fucus distichus monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at F-distichus_contig106092:1195..1347- (Fucus distichus monoicous)
GCGGAAAAGGCGGAATCGAGGCTGGCAACGTCCATGTCGACTCGTGGGAA
GCGCAAGCTGATGGGGGATACCCAATGGATACGTTGCCAGAACTGCGGAA
AGTGGAGGGCGCTGCTGAGGTCCATGGATCCTTCGACCTACGTTGGCCCC
GGCGCGGAAAAGGCGGAATCGAGGCTGGCAACGTCCATGTCGACTCGTGG
GAAGCGCAAGCTGATGGGGGATACCCAATGGATACGTTGCCAGAACTGCG
GAAAGTGGAGGGCGCTGCTGAGGTCCATGGATCCTTCGACCTACGTTGGC
CCCGGC
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