mRNA_F-distichus_contig106061.516.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106061.516.1
Unique NamemRNA_F-distichus_contig106061.516.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A6H5KCR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.930e-9
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   85 MYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFH------GKTDQRITLIDVAYVPDLGFNLYSLHAVQR 279
            MYN+ P+PPG+E I +G+   + VE + +++  FH      G+ D  + L DV  VP + FNLYSLH  Q+
Sbjct:    1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSGEVDFCVQLTDVYVVPGISFNLYSLHQTQK 71          
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.420e-8
Identity = 30/84 (35.71%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   43 DSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFH-----GKTDQRITLIDVAYVPDLGFNLYSLHAVQR 279
            DSGA+        +M+++RP+P G+E I +G+   + V+ +  ++  FH     G+ D R+ + DV  VP + FNL+SLH  QR
Sbjct:  643 DSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQR 726          
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A0D1DPX6_USTMA (Retrotransposon HobS hobase n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1DPX6_USTMA)

HSP 1 Score: 57.4 bits (137), Expect = 1.560e-7
Identity = 35/88 (39.77%), Postives = 46/88 (52.27%), Query Frame = 1
Query:   22 ENYVWIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFHGKTDQR--ITLIDVAYVPDLGFNLYSLHAVQR 279
            +N  WI+DSGAS HMT D T      P P   + + + D R + V  + N+  +       R  ITL DV +VP LG NL+S   VQR
Sbjct:  325 QNETWIIDSGASRHMTGDKTLFSTYGPSPV--QEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFSTPQVQR 410          
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: Q2EPY7_USTMD (Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2EPY7_USTMD)

HSP 1 Score: 57.4 bits (137), Expect = 1.570e-7
Identity = 35/88 (39.77%), Postives = 46/88 (52.27%), Query Frame = 1
Query:   22 ENYVWIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFHGKTDQR--ITLIDVAYVPDLGFNLYSLHAVQR 279
            +N  WI+DSGAS HMT D T      P P   + + + D R + V  + N+  +       R  ITL DV +VP LG NL+S   VQR
Sbjct:  324 QNETWIIDSGASRHMTGDKTLFSTYGPSPV--QEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFSTPQVQR 409          
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.150e-7
Identity = 32/91 (35.16%), Postives = 53/91 (58.24%), Query Frame = 1
Query:   22 ENYVWIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFH-----GKTDQRITLIDVAYVPDLGFNLYSLHAVQR 279
            EN+ W  DSGA+        +M+++RP+P G+E I +G+   + V+ +  ++  FH     G+ D  + + DV  VP + FNL+SLH +QR
Sbjct:  336 ENF-W-ADSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGAYLRVQCLGTVNMAFHMQDQGGERDFCVQMSDVYVVPGITFNLFSLHHMQR 424          
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.930e-7
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   85 MYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFH------GKTDQRITLIDVAYVPDLGFNLYSLHAVQR 279
            MYN+ P+PPG+E I +G+   + VE + +++  FH       + D  + L DV  VP + FNL+SLH  Q+
Sbjct:    1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSREVDFCVQLTDVYVVPGISFNLFSLHQTQK 71          
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: UPI001004D4DF (uncharacterized protein LOC114075566 n=1 Tax=Solanum pennellii TaxID=28526 RepID=UPI001004D4DF)

HSP 1 Score: 51.2 bits (121), Expect = 2.190e-5
Identity = 28/86 (32.56%), Postives = 47/86 (54.65%), Query Frame = 1
Query:   16 SSENYVWIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFHGKTDQRITLIDVAYVPDLGFNLYSLHAV 273
            SS++ +WI+DSGA  HMTHD   ++N+ PL      + + +  RI V    +++ +         T++DV +VP    NL S+H +
Sbjct:  368 SSKSIIWILDSGAFEHMTHDSKLLFNIHPLLTP-VFVNLPNSERIKVTQAGSVNIL------PNFTVVDVLFVPSFRCNLLSVHKI 446          
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 2.310e-5
Identity = 25/70 (35.71%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   85 MYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFH-----GKTDQRITLIDVAYVPDLGFNLYSLHAVQR 279
            M+++RP+P G+E I +G+   + V+ +  ++  FH     G+ D  + + DV  VP + FNL+SLH  QR
Sbjct:    1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQGGELDFCVQMSDVYVVPGITFNLFSLHHTQR 70          
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A1S3TA36_VIGRR (uncharacterized protein LOC106753340 n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A1S3TA36_VIGRR)

HSP 1 Score: 50.4 bits (119), Expect = 3.440e-5
Identity = 29/88 (32.95%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   16 SSENYVWIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFHGKTDQRITLIDVAYVPDLGFNLYSLHAVQR 279
            S++N  WIVDSGAS HMT + + +++         T+TI D  + S++ +  +      K  +++TL  V Y+PDL +NL S+  + +
Sbjct:  156 SADNLSWIVDSGASDHMTGNSS-LFSTLNSCNSSATVTIADGSKSSIKGVGTV------KLSEKLTLNQVFYIPDLKYNLLSVSKLNK 236          
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A5K1EHN1_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1EHN1_9MAGN)

HSP 1 Score: 48.9 bits (115), Expect = 5.850e-5
Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 1
Query:   34 WIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFHGKTDQRITLIDVAYVPDLGFNLYS 261
            W+VD GA+ HMT D  ++ N+ P   G +T+ +G+R+RI + +I   D          ++L DV YVP L   L S
Sbjct:   94 WLVDIGATTHMTGDAGKLKNISPYF-GSDTVVVGNRQRIPITHIGQADIY------PNLSLKDVLYVPCLTKGLIS 162          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KCR3_9PHAE6.930e-940.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3I1_9PHAE2.420e-835.71Integrase catalytic domain-containing protein n=5 ... [more]
A0A0D1DPX6_USTMA1.560e-739.77Retrotransposon HobS hobase n=1 Tax=Ustilago maydi... [more]
Q2EPY7_USTMD1.570e-739.77Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2... [more]
A0A6H5JCK7_9PHAE2.150e-735.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKY9_9PHAE2.930e-738.03Integrase catalytic domain-containing protein n=1 ... [more]
UPI001004D4DF2.190e-532.56uncharacterized protein LOC114075566 n=1 Tax=Solan... [more]
A0A6H5JU31_9PHAE2.310e-535.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A1S3TA36_VIGRR3.440e-532.95uncharacterized protein LOC106753340 n=1 Tax=Vigna... [more]
A0A5K1EHN1_9MAGN5.850e-536.84Uncharacterized protein (Fragment) n=1 Tax=Nymphae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106061contigF-distichus_contig106061:1412..1690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.0894766-CDS-F-distichus_contig106061:1411..16901622928987.0894766-CDS-F-distichus_contig106061:1411..1690Fucus distichus monoicousCDSF-distichus_contig106061 1412..1690 +
1690885092.7711163-CDS-F-distichus_contig106061:1411..16901690885092.7711163-CDS-F-distichus_contig106061:1411..1690Fucus distichus monoicousCDSF-distichus_contig106061 1412..1690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106061.516.1prot_F-distichus_contig106061.516.1Fucus distichus monoicouspolypeptideF-distichus_contig106061 1412..1690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106061.516.1

>prot_F-distichus_contig106061.516.1 ID=prot_F-distichus_contig106061.516.1|Name=mRNA_F-distichus_contig106061.516.1|organism=Fucus distichus monoicous|type=polypeptide|length=93bp
VVQSSSSENYVWIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRI
SVEYIRNMDAIFHGKTDQRITLIDVAYVPDLGFNLYSLHAVQR
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mRNA from alignment at F-distichus_contig106061:1412..1690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106061.516.1 ID=mRNA_F-distichus_contig106061.516.1|Name=mRNA_F-distichus_contig106061.516.1|organism=Fucus distichus monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at F-distichus_contig106061:1412..1690+ (Fucus distichus monoicous)
GTAGTACAGTCGAGCAGCAGTGAGAATTATGTTTGGATTGTCGACAGCGG CGCGTCGTGTCATATGACACATGACGGGACAAGGATGTATAATGTGAGGC CCCTTCCGCCCGGTCGCGAAACAATCACGATCGGGGACCGTCGGAGAATC AGTGTAGAGTACATCAGGAACATGGATGCCATTTTCCACGGAAAGACTGA CCAGAGGATAACGTTAATTGATGTCGCGTACGTACCAGATTTAGGGTTTA ACCTATACTCACTGCACGCTGTCCAGAGG
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Coding sequence (CDS) from alignment at F-distichus_contig106061:1412..1690+

>mRNA_F-distichus_contig106061.516.1 ID=mRNA_F-distichus_contig106061.516.1|Name=mRNA_F-distichus_contig106061.516.1|organism=Fucus distichus monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at F-distichus_contig106061:1412..1690+ (Fucus distichus monoicous)
GTAGTACAGTCGAGCAGCAGTGAGAATTATGTTTGGATTGTCGACAGCGG
CGCGTCGTGTCATATGACACATGACGGGACAAGGATGTATAATGTGAGGC
CCCTTCCGCCCGGTCGCGAAACAATCACGATCGGGGACCGTCGGAGAATC
AGTGTAGAGTACATCAGGAACATGGATGCCATTTTCCACGGAAAGACTGA
CCAGAGGATAACGTTAATTGATGTCGCGTACGTACCAGATTTAGGGTTTA
ACCTATACTCACTGCACGCTGTCCAGAGGGTAGTACAGTCGAGCAGCAGT
GAGAATTATGTTTGGATTGTCGACAGCGGCGCGTCGTGTCATATGACACA
TGACGGGACAAGGATGTATAATGTGAGGCCCCTTCCGCCCGGTCGCGAAA
CAATCACGATCGGGGACCGTCGGAGAATCAGTGTAGAGTACATCAGGAAC
ATGGATGCCATTTTCCACGGAAAGACTGACCAGAGGATAACGTTAATTGA
TGTCGCGTACGTACCAGATTTAGGGTTTAACCTATACTCACTGCACGCTG
TCCAGAGG
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