mRNA_F-distichus_contig106061.516.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A6H5KCR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR3_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 6.930e-9 Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 85 MYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFH------GKTDQRITLIDVAYVPDLGFNLYSLHAVQR 279
MYN+ P+PPG+E I +G+ + VE + +++ FH G+ D + L DV VP + FNLYSLH Q+
Sbjct: 1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSGEVDFCVQLTDVYVVPGISFNLYSLHQTQK 71
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 2.420e-8 Identity = 30/84 (35.71%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 43 DSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFH-----GKTDQRITLIDVAYVPDLGFNLYSLHAVQR 279
DSGA+ +M+++RP+P G+E I +G+ + V+ + ++ FH G+ D R+ + DV VP + FNL+SLH QR
Sbjct: 643 DSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQR 726
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A0D1DPX6_USTMA (Retrotransposon HobS hobase n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1DPX6_USTMA) HSP 1 Score: 57.4 bits (137), Expect = 1.560e-7 Identity = 35/88 (39.77%), Postives = 46/88 (52.27%), Query Frame = 1
Query: 22 ENYVWIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFHGKTDQR--ITLIDVAYVPDLGFNLYSLHAVQR 279
+N WI+DSGAS HMT D T P P + + + D R + V + N+ + R ITL DV +VP LG NL+S VQR
Sbjct: 325 QNETWIIDSGASRHMTGDKTLFSTYGPSPV--QEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFSTPQVQR 410
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: Q2EPY7_USTMD (Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2EPY7_USTMD) HSP 1 Score: 57.4 bits (137), Expect = 1.570e-7 Identity = 35/88 (39.77%), Postives = 46/88 (52.27%), Query Frame = 1
Query: 22 ENYVWIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFHGKTDQR--ITLIDVAYVPDLGFNLYSLHAVQR 279
+N WI+DSGAS HMT D T P P + + + D R + V + N+ + R ITL DV +VP LG NL+S VQR
Sbjct: 324 QNETWIIDSGASRHMTGDKTLFSTYGPSPV--QEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFSTPQVQR 409
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 2.150e-7 Identity = 32/91 (35.16%), Postives = 53/91 (58.24%), Query Frame = 1
Query: 22 ENYVWIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFH-----GKTDQRITLIDVAYVPDLGFNLYSLHAVQR 279
EN+ W DSGA+ +M+++RP+P G+E I +G+ + V+ + ++ FH G+ D + + DV VP + FNL+SLH +QR
Sbjct: 336 ENF-W-ADSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGAYLRVQCLGTVNMAFHMQDQGGERDFCVQMSDVYVVPGITFNLFSLHHMQR 424
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 2.930e-7 Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 85 MYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFH------GKTDQRITLIDVAYVPDLGFNLYSLHAVQR 279
MYN+ P+PPG+E I +G+ + VE + +++ FH + D + L DV VP + FNL+SLH Q+
Sbjct: 1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSREVDFCVQLTDVYVVPGISFNLFSLHQTQK 71
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: UPI001004D4DF (uncharacterized protein LOC114075566 n=1 Tax=Solanum pennellii TaxID=28526 RepID=UPI001004D4DF) HSP 1 Score: 51.2 bits (121), Expect = 2.190e-5 Identity = 28/86 (32.56%), Postives = 47/86 (54.65%), Query Frame = 1
Query: 16 SSENYVWIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFHGKTDQRITLIDVAYVPDLGFNLYSLHAV 273
SS++ +WI+DSGA HMTHD ++N+ PL + + + RI V +++ + T++DV +VP NL S+H +
Sbjct: 368 SSKSIIWILDSGAFEHMTHDSKLLFNIHPLLTP-VFVNLPNSERIKVTQAGSVNIL------PNFTVVDVLFVPSFRCNLLSVHKI 446
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE) HSP 1 Score: 51.2 bits (121), Expect = 2.310e-5 Identity = 25/70 (35.71%), Postives = 42/70 (60.00%), Query Frame = 1
Query: 85 MYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFH-----GKTDQRITLIDVAYVPDLGFNLYSLHAVQR 279
M+++RP+P G+E I +G+ + V+ + ++ FH G+ D + + DV VP + FNL+SLH QR
Sbjct: 1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQGGELDFCVQMSDVYVVPGITFNLFSLHHTQR 70
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A1S3TA36_VIGRR (uncharacterized protein LOC106753340 n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A1S3TA36_VIGRR) HSP 1 Score: 50.4 bits (119), Expect = 3.440e-5 Identity = 29/88 (32.95%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 16 SSENYVWIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFHGKTDQRITLIDVAYVPDLGFNLYSLHAVQR 279
S++N WIVDSGAS HMT + + +++ T+TI D + S++ + + K +++TL V Y+PDL +NL S+ + +
Sbjct: 156 SADNLSWIVDSGASDHMTGNSS-LFSTLNSCNSSATVTIADGSKSSIKGVGTV------KLSEKLTLNQVFYIPDLKYNLLSVSKLNK 236
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Match: A0A5K1EHN1_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1EHN1_9MAGN) HSP 1 Score: 48.9 bits (115), Expect = 5.850e-5 Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 1
Query: 34 WIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRISVEYIRNMDAIFHGKTDQRITLIDVAYVPDLGFNLYS 261
W+VD GA+ HMT D ++ N+ P G +T+ +G+R+RI + +I D ++L DV YVP L L S
Sbjct: 94 WLVDIGATTHMTGDAGKLKNISPYF-GSDTVVVGNRQRIPITHIGQADIY------PNLSLKDVLYVPCLTKGLIS 162 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106061.516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig106061.516.1 >prot_F-distichus_contig106061.516.1 ID=prot_F-distichus_contig106061.516.1|Name=mRNA_F-distichus_contig106061.516.1|organism=Fucus distichus monoicous|type=polypeptide|length=93bp VVQSSSSENYVWIVDSGASCHMTHDGTRMYNVRPLPPGRETITIGDRRRIback to top mRNA from alignment at F-distichus_contig106061:1412..1690+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig106061.516.1 ID=mRNA_F-distichus_contig106061.516.1|Name=mRNA_F-distichus_contig106061.516.1|organism=Fucus distichus monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at F-distichus_contig106061:1412..1690+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig106061:1412..1690+ >mRNA_F-distichus_contig106061.516.1 ID=mRNA_F-distichus_contig106061.516.1|Name=mRNA_F-distichus_contig106061.516.1|organism=Fucus distichus monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at F-distichus_contig106061:1412..1690+ (Fucus distichus monoicous)back to top |