mRNA_F-distichus_contig106020.514.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106020.514.1
Unique NamemRNA_F-distichus_contig106020.514.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig106020.514.1 vs. uniprot
Match: D7G064_ECTSI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 6.750e-40
Identity = 87/134 (64.93%), Postives = 96/134 (71.64%), Query Frame = 1 
Query:    4 LQRAAISISAGVHNHPAASP--SXXXXXXXXXXARVVGGAI-------------GGEGSLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDEIQ 360
            L++AA+SISAGV    A SP  S            + GG++              GEG LDAQLFLIKHLLTLREQLTPFHIQFV AE KLNFGSTRMALRKFIRHTP+LFRLS KNAL+ELTVDSIPTIDE+Q
Sbjct:  700 LKKAAVSISAGVTAGSAPSPPVSSGGGGRGAPGGALAGGSVVPRXXXXXXXXXGSGEGGLDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTRMALRKFIRHTPALFRLSSKNALVELTVDSIPTIDEVQ 833
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BLAST of mRNA_F-distichus_contig106020.514.1 vs. uniprot
Match: A0A7S2SLN9_9STRA (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLN9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.720e-16
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:  130 GSLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 354
            GS D  LFLIKHLLTLREQLTPF I F + + +L+F STR AL +F+     +F ++R+NALL L  D +P +DE
Sbjct:   68 GSEDGDLFLIKHLLTLREQLTPFDINFSQLKRRLDFSSTRQALSRFMAERGRVFAMTRQNALLSLAKDGLPQVDE 142
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BLAST of mRNA_F-distichus_contig106020.514.1 vs. uniprot
Match: W7U7M5_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7M5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.480e-15
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:  127 EGSLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 354
            +G +DA LFL+KHLL LREQL PF I+F   E +L+F STR AL +F     +LFR+   NALL L + S+PT++E
Sbjct:  158 KGDMDADLFLVKHLLILREQLVPFDIEFAAIEKRLDFNSTRGALTRFFVDRHNLFRMGTDNALLSLALGSVPTVNE 233
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BLAST of mRNA_F-distichus_contig106020.514.1 vs. uniprot
Match: A0A835YUG6_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.270e-15
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:  133 SLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTP--SLFRLSRKNALLELTVDSIPTIDEIQ 360
            SLD  LFL+KHLLTLREQL PF I F+R + KLNF +T  ALR+  + +   +LFRLS +N L++   +S+P +DE++
Sbjct:  816 SLDGHLFLVKHLLTLREQLEPFDISFMRNDRKLNFSTTVSALRRLAQPSSGLALFRLSMQNVLIQTAKNSLPAVDEVE 893
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BLAST of mRNA_F-distichus_contig106020.514.1 vs. uniprot
Match: A0A7S2XY61_9STRA (Conserved oligomeric Golgi complex subunit 3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY61_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.080e-14
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  136 LDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 354
            LD  LFL+KHLL +REQLTPF IQF+  E KL+F  T  A   F++    LFR    NALL L  + IP++ E
Sbjct:    5 LDGNLFLVKHLLVMREQLTPFDIQFLAVEKKLDFTGTASAFYNFLQRRDRLFRFDGSNALLTLAKEGIPSVQE 77
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BLAST of mRNA_F-distichus_contig106020.514.1 vs. uniprot
Match: A0A482R5R2_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482R5R2_9ARCH)

HSP 1 Score: 72.4 bits (176), Expect = 1.560e-12
Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:  112 GAIGGEG-------SLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 354
            GA+GG         SLDA LFLIK+LL +REQL+PF +Q       L+F ST  A    + H P + RLSR NALL   ++ +PT+ E
Sbjct:  239 GALGGAAIAARHVTSLDADLFLIKNLLIVREQLSPFDVQTNATSKSLDFRSTSEAFSSLLAHLPQVLRLSRDNALLSFVMNGLPTVSE 326
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BLAST of mRNA_F-distichus_contig106020.514.1 vs. uniprot
Match: A0A3F2RQD8_9STRA (Conserved oligomeric Golgi complex subunit 3 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQD8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.610e-11
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:  118 IGGEGSLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 354
            +  +G L   LFL+KHLLTLREQ+TPF IQF +    L+F S+  A+ + +    +LFRLS  N ++ L    IP I E
Sbjct:  596 VAAQGGLHGSLFLVKHLLTLREQITPFEIQFAQTSKALDFTSSGDAMNQLLADASTLFRLSGPNGIVGLFTRGIPQIQE 674
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BLAST of mRNA_F-distichus_contig106020.514.1 vs. uniprot
Match: A0A225WRW3_9STRA (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WRW3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.530e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  127 EGSLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 354
            +G L   LFL+KHLLTLREQ+TPF IQF +    L+F S+  A+ + +  T +LFRLS  N ++ L    IP I E
Sbjct:  529 QGGLHGSLFLVKHLLTLREQITPFEIQFSQTSKALDFTSSADAMNELLVDTSTLFRLSGPNGIVGLFTRGIPQIQE 604
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BLAST of mRNA_F-distichus_contig106020.514.1 vs. uniprot
Match: A0A3M6VIY3_9STRA (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIY3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.610e-11
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:  127 EGSLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLSRKNALLELTVDSIPTIDE 354
            +G L   LFL+KHLL LREQ+TPF IQF +    L+F S+  A+ + +  T +LFR S  N ++ L V  IP I E
Sbjct:  591 QGGLHGSLFLVKHLLILREQITPFEIQFAQTSKALDFTSSADAMNELLADTSTLFRFSGPNGIMGLFVRGIPHIQE 666
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BLAST of mRNA_F-distichus_contig106020.514.1 vs. uniprot
Match: A0A401Q3P5_SCYTO (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401Q3P5_SCYTO)

HSP 1 Score: 66.6 bits (161), Expect = 2.320e-10
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:  127 EGSLDAQLFLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFI--RHTPSLFRLSRKNALLELTVDSIPTIDE 354
            +   D QLFLIKHLL LREQ+ PFH  F   E  L+   TR A  K +  R  P LFRLS  N++LE  ++  P I E
Sbjct:  746 DAQTDGQLFLIKHLLILREQIAPFHTDFAIKEISLDLKKTREAAFKMLNPRSVPRLFRLSSNNSILEFLLEGSPVIKE 823
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106020.514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G064_ECTSI6.750e-4064.93Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A7S2SLN9_9STRA4.720e-1654.67Conserved oligomeric Golgi complex subunit 3 n=2 T... [more]
W7U7M5_9STRA1.480e-1552.63Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A835YUG6_9STRA8.270e-1551.28Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A7S2XY61_9STRA1.080e-1450.68Conserved oligomeric Golgi complex subunit 3 (Frag... [more]
A0A482R5R2_9ARCH1.560e-1245.45Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A3F2RQD8_9STRA2.610e-1144.30Conserved oligomeric Golgi complex subunit 3 n=4 T... [more]
A0A225WRW3_9STRA3.530e-1147.37Conserved oligomeric Golgi complex subunit 3 n=2 T... [more]
A0A3M6VIY3_9STRA6.610e-1146.05Conserved oligomeric Golgi complex subunit 3 n=2 T... [more]
A0A401Q3P5_SCYTO2.320e-1047.44Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106020contigF-distichus_contig106020:226..1491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue2.7e-34
Seed eggNOG ortholog2880.D7G064
Preferred nameCOG3
KEGG koko:K20290
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006403,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008565,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030334,GO:0031090,GO:0031647,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033206,GO:0033227,GO:0033365,GO:0034613,GO:0034645,GO:0035262,GO:0036211,GO:0040012,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048513,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050821,GO:0051179,GO:0051234,GO:0051236,GO:0051270,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046,GO:2000145
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2604@1,KOG2604@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928986.8647845-CDS-F-distichus_contig106020:225..4731622928986.8647845-CDS-F-distichus_contig106020:225..473Fucus distichus monoicousCDSF-distichus_contig106020 226..473 +
1690885092.6634583-CDS-F-distichus_contig106020:225..4731690885092.6634583-CDS-F-distichus_contig106020:225..473Fucus distichus monoicousCDSF-distichus_contig106020 226..473 +
1622928986.8805447-CDS-F-distichus_contig106020:1379..14911622928986.8805447-CDS-F-distichus_contig106020:1379..1491Fucus distichus monoicousCDSF-distichus_contig106020 1380..1491 +
1690885092.6805074-CDS-F-distichus_contig106020:1379..14911690885092.6805074-CDS-F-distichus_contig106020:1379..1491Fucus distichus monoicousCDSF-distichus_contig106020 1380..1491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106020.514.1prot_F-distichus_contig106020.514.1Fucus distichus monoicouspolypeptideF-distichus_contig106020 226..1491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106020.514.1

>prot_F-distichus_contig106020.514.1 ID=prot_F-distichus_contig106020.514.1|Name=mRNA_F-distichus_contig106020.514.1|organism=Fucus distichus monoicous|type=polypeptide|length=120bp
ALQRAAISISAGVHNHPAASPSSGGGGGGGGGARVVGGAIGGEGSLDAQL
FLIKHLLTLREQLTPFHIQFVRAEHKLNFGSTRMALRKFIRHTPSLFRLS
RKNALLELTVDSIPTIDEIQ
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mRNA from alignment at F-distichus_contig106020:226..1491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106020.514.1 ID=mRNA_F-distichus_contig106020.514.1|Name=mRNA_F-distichus_contig106020.514.1|organism=Fucus distichus monoicous|type=mRNA|length=1266bp|location=Sequence derived from alignment at F-distichus_contig106020:226..1491+ (Fucus distichus monoicous)
GCCTTGCAGCGTGCAGCCATCTCAATTAGCGCAGGAGTTCACAATCATCC
CGCGGCGTCGCCCTCCAGCGGAGGAGGAGGAGGAGGAGGCGGAGGAGCAA
GGGTCGTTGGAGGTGCAATTGGGGGAGAAGGAAGTCTCGACGCCCAGCTT
TTCTTGATTAAGCACCTGCTGACTCTGAGGGAGCAGCTGACCCCCTTTCA
CATACAGTTCGTCAGGGCGGAGCACAAACTTAACTTTGGCTCTACTAGGT
GTGTGTGTGTGTGTGTGTGTGTGTGTCGAAAGTCAATTCGGACGAAAGTA
TGTCCAGCTGCAAATCCTATGGGCGGAAGCATAACCGGATCTAATCAATC
ACTTGGACGAAATGAGATCGATCCCAATGGGCGTAACCGAACCAGTTTTA
TAGCTCGGAACCAAATTAGAATTACTCCACGGCGCGAGAACCGAGGGGAC
TCAACGATCGGAATCAAACCGAACCGAACCGAACCAAAATCAACTGACCG
GGACCGATTCTACCAAATAAGTGGAACTGAAGCGATCTTGAGTTGTACGT
ACGGAATTGGACCGACTCGATGTGTCTGAACTGATCGAAATTCCACCAGC
TGAAATGGGTTTAACGATGGAACAAAACGGAAGTGTGATTACACTATCCA
TTTTTTTTTCTATCTCACTTATTAATAGTATAGCCGATGGACCTCAACGT
TGCCACCCTGCCTACAGTATCTATGATCTCTAAAAATCTTCCCATCTTTA
CTCAGTTCACGCCTTACAATTTTTTTCAACGCGATGCAAGTTCAGCACTC
TTGCAACTCGTCAACTAATGGCTGAAGTTTAACTTACTCACGTACTCACG
CTTTCCGCTGTTATTAAGGACGCTAGAATAAAAATCCTGCTTTGACAAGA
ATCAGACTCACAACTTCCGCACACTAGCAGGTGTGCAGGTTAGCTTGTAG
ATCACTCGGGCGACGTGAGGGCAGTGGAGCTGAGTAATTCCTGAACCGAT
TTTATTAACCGAACGAGATCAATCCTGAACCATCCAAGTAAAAGGAACCC
GGAGAAATTTAATCAACAGCGGGCTCTGTCGAACCGAACCGAACCGAATC
GAACCGAATCGAACCGAATCGAACCGAACCGAACCGATCCCATCCAAACC
GCAGGATGGCTCTGAGGAAGTTCATCCGGCACACGCCGTCCCTTTTCCGG
CTCTCTCGCAAGAACGCACTGCTGGAGCTCACGGTGGACAGCATCCCTAC
GATCGACGAGATACAG
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Coding sequence (CDS) from alignment at F-distichus_contig106020:226..1491+

>mRNA_F-distichus_contig106020.514.1 ID=mRNA_F-distichus_contig106020.514.1|Name=mRNA_F-distichus_contig106020.514.1|organism=Fucus distichus monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at F-distichus_contig106020:226..1491+ (Fucus distichus monoicous)
GCCTTGCAGCGTGCAGCCATCTCAATTAGCGCAGGAGTTCACAATCATCC
CGCGGCGTCGCCCTCCAGCGGAGGAGGAGGAGGAGGAGGCGGAGGAGCAA
GGGTCGTTGGAGGTGCAATTGGGGGAGAAGGAAGTCTCGACGCCCAGCTT
TTCTTGATTAAGCACCTGCTGACTCTGAGGGAGCAGCTGACCCCCTTTCA
CATACAGTTCGTCAGGGCGGAGCACAAACTTAACTTTGGCTCTACTAGGC
CTTGCAGCGTGCAGCCATCTCAATTAGCGCAGGAGTTCACAATCATCCCG
CGGCGTCGCCCTCCAGCGGAGGAGGAGGAGGAGGAGGCGGAGGAGCAAGG
GTCGTTGGAGGTGCAATTGGGGGAGAAGGAAGTCTCGACGCCCAGCTTTT
CTTGATTAAGCACCTGCTGACTCTGAGGGAGCAGCTGACCCCCTTTCACA
TACAGTTCGTCAGGGCGGAGCACAAACTTAACTTTGGCTCTACTAGGATG
GCTCTGAGGAAGTTCATCCGGCACACGCCGTCCCTTTTCCGGCTCTCTCG
CAAGAACGCACTGCTGGAGCTCACGGTGGACAGCATCCCTACGATCGACG
AGATACAGGATGGCTCTGAGGAAGTTCATCCGGCACACGCCGTCCCTTTT
CCGGCTCTCTCGCAAGAACGCACTGCTGGAGCTCACGGTGGACAGCATCC
CTACGATCGACGAGATACAG
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