mRNA_F-distichus_contig105978.510.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105978.510.1
Unique NamemRNA_F-distichus_contig105978.510.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105978.510.1 vs. uniprot
Match: A0A6H5JFE9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.000e-24
Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 1 
Query:    1 LEGKRVRSSAYIKDENGVLVRDVELARERWVRWLHTLFNVKSPRLDPNIAEGLDKWPENMPLGVQPMMQELTDAICSLANGKAVGSGGVSIELFKITLNGDPSLRRRLLDVVVRIWM 351
            +EGKR  +S  IKDE+G ++RD  L R+RW RW H L N KSP +D + A+ + +WP  +PL   P + E+ +A+  +AN KAVG   +  EL K+ L+GD  L R    +VV +W+
Sbjct:   49 VEGKRSFTSRSIKDEDGKVLRDPTLIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDILPAELIKLFLDGDQGLLREFHGIVVDVWL 165
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BLAST of mRNA_F-distichus_contig105978.510.1 vs. uniprot
Match: A0A6H5JY74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY74_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.570e-22
Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:    1 LEGKRVRSSAYIKDENGVLVRDVELARERWVRWLHTLFNVKSPRLDPNIAEGLDKWPENMPLGVQPMMQELTDAICSLANGKAVGSGGVSIELFKITLNGDPSLRRRLLDVVVRIW 348
            +EGKR  +S  IKDE+G ++RD  L R+RW RW H L N KSP +D +  + + +WP  +PL   P + E+ +A+  +AN KAVG   +  EL K+ L+GD  L R    +VV +W
Sbjct:  302 VEGKRPFTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGLLREFHAIVVDVW 417
[Close]
BLAST of mRNA_F-distichus_contig105978.510.1 vs. uniprot
Match: A0A6H5KE31_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE31_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 3.930e-22
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:    1 LEGKRVRSSAYIKDENGVLVRDVELARERWVRWLHTLFNVKSPRLDPNIAEGLDKWPENMPLGVQPMMQELTDAICSLANGKAVGSGGVSIELFKITLNGDPSLRRRLLDVVVRIW 348
            +EGKR  +S  IKDE+G ++RD  L R+RW RW H L N KSP +D +  + + +WP  +PL   P + E+ +A+  +AN KAVG   +  EL K+ L+GD    R    +VV +W
Sbjct:    4 VEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVW 119
[Close]
BLAST of mRNA_F-distichus_contig105978.510.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.050e-22
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:    1 LEGKRVRSSAYIKDENGVLVRDVELARERWVRWLHTLFNVKSPRLDPNIAEGLDKWPENMPLGVQPMMQELTDAICSLANGKAVGSGGVSIELFKITLNGDPSLRRRLLDVVVRIW 348
            +EGKR  +S  IKDE+G ++RD  L R+RW RW H L N KSP +D +  + + +WP  +PL   P + E+ +A+  +AN KAVG   +  EL K+ L+GD    R    +VV +W
Sbjct:    4 VEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVW 119
[Close]
BLAST of mRNA_F-distichus_contig105978.510.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.200e-22
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:    1 LEGKRVRSSAYIKDENGVLVRDVELARERWVRWLHTLFNVKSPRLDPNIAEGLDKWPENMPLGVQPMMQELTDAICSLANGKAVGSGGVSIELFKITLNGDPSLRRRLLDVVVRIW 348
            +EGKR  +S  IKDE+G ++RD  L R+RW RW H L N KSP +D +  + + +WP  +PL   P + E+ +A+  +AN KAVG   +  EL K+ L+GD    R    +VV +W
Sbjct:  282 VEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVW 397
[Close]
BLAST of mRNA_F-distichus_contig105978.510.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.230e-22
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:    1 LEGKRVRSSAYIKDENGVLVRDVELARERWVRWLHTLFNVKSPRLDPNIAEGLDKWPENMPLGVQPMMQELTDAICSLANGKAVGSGGVSIELFKITLNGDPSLRRRLLDVVVRIW 348
            +EGKR  +S  IKDE+G ++RD  L R+RW RW H L N KSP +D +  + + +WP  +PL   P + E+ +A+  +AN KAVG   +  EL K+ L+GD    R    +VV +W
Sbjct:   67 VEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVW 182
[Close]
BLAST of mRNA_F-distichus_contig105978.510.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.240e-22
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:    1 LEGKRVRSSAYIKDENGVLVRDVELARERWVRWLHTLFNVKSPRLDPNIAEGLDKWPENMPLGVQPMMQELTDAICSLANGKAVGSGGVSIELFKITLNGDPSLRRRLLDVVVRIW 348
            +EGKR  +S  IKDE+G ++RD  L R+RW RW H L N KSP +D +  + + +WP  +PL   P + E+ +A+  +AN KAVG   +  EL K+ L+GD    R    +VV +W
Sbjct:  420 VEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVW 535
[Close]
BLAST of mRNA_F-distichus_contig105978.510.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.270e-22
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:    1 LEGKRVRSSAYIKDENGVLVRDVELARERWVRWLHTLFNVKSPRLDPNIAEGLDKWPENMPLGVQPMMQELTDAICSLANGKAVGSGGVSIELFKITLNGDPSLRRRLLDVVVRIW 348
            +EGKR  +S  IKDE+G ++RD  L R+RW RW H L N KSP +D +  + + +WP  +PL   P + E+ +A+  +AN KAVG   +  EL K+ L+GD    R    +VV +W
Sbjct:  532 VEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVW 647
[Close]
BLAST of mRNA_F-distichus_contig105978.510.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.300e-22
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:    1 LEGKRVRSSAYIKDENGVLVRDVELARERWVRWLHTLFNVKSPRLDPNIAEGLDKWPENMPLGVQPMMQELTDAICSLANGKAVGSGGVSIELFKITLNGDPSLRRRLLDVVVRIW 348
            +EGKR  +S  IKDE+G ++RD  L R+RW RW H L N KSP +D +  + + +WP  +PL   P + E+ +A+  +AN KAVG   +  EL K+ L+GD    R    +VV +W
Sbjct:  653 VEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVW 768
[Close]
BLAST of mRNA_F-distichus_contig105978.510.1 vs. uniprot
Match: A0A6H5L6U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.920e-21
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 1 
Query:    1 LEGKRVRSSAYIKDENGVLVRDVELARERWVRWLHTLFNVKSPRLDPNIAEGLDKWPENMPLGVQPMMQELTDAICSLANGKAVGSGGVSIELFKITLNGDPSLRRRLLDVVVRIW 348
            +EGKR  +S  IKDE+G ++ D  + R+RW RW   L N KSP +D + A+ + +WP  +PL   P + E+ +A+  +AN KAVG   +  EL K+ L+GD    R    +VV +W
Sbjct:  107 VEGKRSFTSQNIKDEDGKVLGDPTIIRQRWARWFPKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGFLREFHAIVVDVW 222
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105978.510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JFE9_9PHAE3.000e-2442.74Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JY74_9PHAE1.570e-2242.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE31_9PHAE3.930e-2241.38Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KKB2_9PHAE5.050e-2241.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8Z5_9PHAE5.200e-2241.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUB0_9PHAE5.230e-2241.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC90_9PHAE5.240e-2241.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE5.270e-2241.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDI8_9PHAE5.300e-2241.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6U9_9PHAE3.920e-2139.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105978contigF-distichus_contig105978:53..403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928986.3017378-CDS-F-distichus_contig105978:52..4031622928986.3017378-CDS-F-distichus_contig105978:52..403Fucus distichus monoicousCDSF-distichus_contig105978 53..403 -
1690885092.4836059-CDS-F-distichus_contig105978:52..4031690885092.4836059-CDS-F-distichus_contig105978:52..403Fucus distichus monoicousCDSF-distichus_contig105978 53..403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105978.510.1prot_F-distichus_contig105978.510.1Fucus distichus monoicouspolypeptideF-distichus_contig105978 53..403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105978.510.1

>prot_F-distichus_contig105978.510.1 ID=prot_F-distichus_contig105978.510.1|Name=mRNA_F-distichus_contig105978.510.1|organism=Fucus distichus monoicous|type=polypeptide|length=117bp
LEGKRVRSSAYIKDENGVLVRDVELARERWVRWLHTLFNVKSPRLDPNIA
EGLDKWPENMPLGVQPMMQELTDAICSLANGKAVGSGGVSIELFKITLNG
DPSLRRRLLDVVVRIWM
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mRNA from alignment at F-distichus_contig105978:53..403-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105978.510.1 ID=mRNA_F-distichus_contig105978.510.1|Name=mRNA_F-distichus_contig105978.510.1|organism=Fucus distichus monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at F-distichus_contig105978:53..403- (Fucus distichus monoicous)
CTGGAAGGGAAGCGAGTCCGCAGCTCGGCGTACATCAAAGACGAGAACGG
CGTACTCGTGAGGGACGTTGAACTCGCCCGCGAACGATGGGTCCGGTGGC
TCCACACTCTCTTCAACGTCAAGTCACCGAGGCTTGACCCGAACATCGCA
GAAGGCCTTGACAAGTGGCCCGAAAACATGCCGCTAGGAGTTCAGCCCAT
GATGCAGGAGCTGACAGACGCCATCTGCTCGTTGGCGAACGGAAAGGCTG
TCGGATCGGGCGGAGTCTCCATCGAGCTGTTCAAGATCACCCTCAACGGC
GATCCCTCCCTGCGGCGGAGACTGCTCGATGTTGTCGTCCGTATTTGGAT
G
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Coding sequence (CDS) from alignment at F-distichus_contig105978:53..403-

>mRNA_F-distichus_contig105978.510.1 ID=mRNA_F-distichus_contig105978.510.1|Name=mRNA_F-distichus_contig105978.510.1|organism=Fucus distichus monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at F-distichus_contig105978:53..403- (Fucus distichus monoicous)
CTGGAAGGGAAGCGAGTCCGCAGCTCGGCGTACATCAAAGACGAGAACGG
CGTACTCGTGAGGGACGTTGAACTCGCCCGCGAACGATGGGTCCGGTGGC
TCCACACTCTCTTCAACGTCAAGTCACCGAGGCTTGACCCGAACATCGCA
GAAGGCCTTGACAAGTGGCCCGAAAACATGCCGCTAGGAGTTCAGCCCAT
GATGCAGGAGCTGACAGACGCCATCTGCTCGTTGGCGAACGGAAAGGCTG
TCGGATCGGGCGGAGTCTCCATCGAGCTGTTCAAGATCACCCTCAACGGC
GATCCCTCCCTGCGGCGGAGACTGCTCGATGTTGTCGTCCGTATTTGGAT
GCTGGAAGGGAAGCGAGTCCGCAGCTCGGCGTACATCAAAGACGAGAACG
GCGTACTCGTGAGGGACGTTGAACTCGCCCGCGAACGATGGGTCCGGTGG
CTCCACACTCTCTTCAACGTCAAGTCACCGAGGCTTGACCCGAACATCGC
AGAAGGCCTTGACAAGTGGCCCGAAAACATGCCGCTAGGAGTTCAGCCCA
TGATGCAGGAGCTGACAGACGCCATCTGCTCGTTGGCGAACGGAAAGGCT
GTCGGATCGGGCGGAGTCTCCATCGAGCTGTTCAAGATCACCCTCAACGG
CGATCCCTCCCTGCGGCGGAGACTGCTCGATGTTGTCGTCCGTATTTGGA
TG
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