mRNA_F-distichus_contig105976.509.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105976.509.1
Unique NamemRNA_F-distichus_contig105976.509.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105976.509.1 vs. uniprot
Match: UPI000C776F1F (phospholipase B1, membrane-associated-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C776F1F)

HSP 1 Score: 64.7 bits (156), Expect = 9.640e-11
Identity = 41/85 (48.24%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:   25 ISFIFLCQCFG-QSKDFLCKCRGP-----SYSTPHDVNKLRLEDIEIIGANGDSDKAAFAANSGVALTYFTEYWGASFATGTDGS 261
            I F FL   FG  + D+L   R P     S   P +VN +R  DI+IIGA GDSD AAFAA S   L Y  EY G S+ATG D +
Sbjct:    7 ILFCFLFSWFGFVNTDYLLPVRFPCKAERSKVKPKNVNLVRPSDIDIIGALGDSDTAAFAARSNSLLDYMNEYPGVSYATGVDAN 91
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105976.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000C776F1F9.640e-1148.24phospholipase B1, membrane-associated-like n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105976contigF-distichus_contig105976:1515..1793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size279
Cds size279
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928986.2182543-CDS-F-distichus_contig105976:1514..17931622928986.2182543-CDS-F-distichus_contig105976:1514..1793Fucus distichus monoicousCDSF-distichus_contig105976 1515..1793 +
1690885092.4693377-CDS-F-distichus_contig105976:1514..17931690885092.4693377-CDS-F-distichus_contig105976:1514..1793Fucus distichus monoicousCDSF-distichus_contig105976 1515..1793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105976.509.1prot_F-distichus_contig105976.509.1Fucus distichus monoicouspolypeptideF-distichus_contig105976 1515..1793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105976.509.1

>prot_F-distichus_contig105976.509.1 ID=prot_F-distichus_contig105976.509.1|Name=mRNA_F-distichus_contig105976.509.1|organism=Fucus distichus monoicous|type=polypeptide|length=93bp
MQLQHLVLISFIFLCQCFGQSKDFLCKCRGPSYSTPHDVNKLRLEDIEII
GANGDSDKAAFAANSGVALTYFTEYWGASFATGTDGSWRQIC*
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mRNA from alignment at F-distichus_contig105976:1515..1793+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105976.509.1 ID=mRNA_F-distichus_contig105976.509.1|Name=mRNA_F-distichus_contig105976.509.1|organism=Fucus distichus monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at F-distichus_contig105976:1515..1793+ (Fucus distichus monoicous)
ATGCAGCTTCAACATCTTGTTCTTATATCTTTCATTTTTCTGTGTCAATG
TTTTGGGCAATCAAAAGATTTCCTGTGCAAGTGTCGCGGGCCTTCTTATT
CTACTCCTCATGATGTGAACAAGTTAAGGCTGGAGGATATTGAGATCATT
GGAGCTAATGGTGATTCAGACAAGGCGGCATTTGCAGCTAATAGTGGGGT
AGCTCTCACATATTTTACCGAATACTGGGGAGCATCATTTGCTACGGGTA
CTGATGGTAGTTGGAGGCAAATCTGCTGA
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Coding sequence (CDS) from alignment at F-distichus_contig105976:1515..1793+

>mRNA_F-distichus_contig105976.509.1 ID=mRNA_F-distichus_contig105976.509.1|Name=mRNA_F-distichus_contig105976.509.1|organism=Fucus distichus monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at F-distichus_contig105976:1515..1793+ (Fucus distichus monoicous)
ATGCAGCTTCAACATCTTGTTCTTATATCTTTCATTTTTCTGTGTCAATG
TTTTGGGCAATCAAAAGATTTCCTGTGCAAGTGTCGCGGGCCTTCTTATT
CTACTCCTCATGATGTGAACAAGTTAAGGCTGGAGGATATTGAGATCATT
GGAGCTAATGGTGATTCAGACAAGGCGGCATTTGCAGCTAATAGTGGGGT
AGCTCTCACATATTTTACCGAATACTGGGGAGCATCATTTGCTACGGGTA
CTGATGGTAGTTGGAGGCAAATCTGCTGAATGCAGCTTCAACATCTTGTT
CTTATATCTTTCATTTTTCTGTGTCAATGTTTTGGGCAATCAAAAGATTT
CCTGTGCAAGTGTCGCGGGCCTTCTTATTCTACTCCTCATGATGTGAACA
AGTTAAGGCTGGAGGATATTGAGATCATTGGAGCTAATGGTGATTCAGAC
AAGGCGGCATTTGCAGCTAATAGTGGGGTAGCTCTCACATATTTTACCGA
ATACTGGGGAGCATCATTTGCTACGGGTACTGATGGTAGTTGGAGGCAAA
TCTGCTGA
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