mRNA_F-distichus_contig105959.508.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-distichus_contig105959.508.1
Unique Name	mRNA_F-distichus_contig105959.508.1
Type	mRNA
Organism	Fucus distichus monoicous (Fucus distichus monoicous)

Homology

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BLAST of mRNA_F-distichus_contig105959.508.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 9.790e-26
Identity = 61/124 (49.19%), Postives = 75/124 (60.48%), Query Frame = 1

Query:    7 TAQNSPAVATWTRANKNLFGILFFTTERSAHNVVKKHMGKTREDGVGNGQAAWNALETKYNSNTKEGRRAYHEYLHSIKMKSGDDPNDFLYTMDGYRERLEDMGQPVPDERYEDIILQALPAEY 378
            T+     VA W RAN   F I+FF TE SAH  VK   G   +   G+G  AW  LE  ++ +TKE RRA    L    MKSG+DP+DFL  MD  R RLEDMG+ +PDE YED++L+AL  EY
Sbjct:   14 TSATPAEVAKWQRANFQQFSIIFFGTEGSAHITVKPFTGT--KGNPGDGAGAWKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEY 135

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BLAST of mRNA_F-distichus_contig105959.508.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.600e-16
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1

Query:    7 TAQNSPAVATWTRANKNLFGILFFTTERSAHNVVKKHMGKTREDGVGNGQAAWNALETKYNSNTKEGRRAYHEYLHSIKMKSGDDPNDFLYTMDGYRERLEDMGQPVPDERYEDIILQAL 366
            TA N+  VA W +AN  LF +LF  T  SA   V+ H G    D +G+G AAW AL  ++++ T+E RRA H  L +++  +G DP DF       + RL+ +G+ V D  Y DI+L  L
Sbjct:   45 TAANAEDVAAWDKANGRLFSLLFVVTSESAQLTVRTHEGAADSD-MGDGTAAWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDLVYLDIMLSGL 163

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BLAST of mRNA_F-distichus_contig105959.508.1 vs. uniprot
Match: A0A6H5JH28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH28_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.860e-15
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1

Query:    7 TAQNSPAVATWTRANKNLFGILFFTTERSAHNVVKKHMGKTREDGVGNGQAAWNALETKYNSNTKEGRRAYHEYLHSIKMKSGDDPNDFLYTMDGYRERLEDMGQPVPDERYEDIILQAL 366
            TA N+  VA W +AN  LF +LFF T  SA   V+ + G    D +G+G AAW AL  ++++ T+E R A H  L +++  +G DP DF       + RL+ +G+ V D  Y DI+L  L
Sbjct:   56 TAANAEDVAAWDKANGRLFSLLFFVTSGSAQLTVRTNEGAADSD-MGDGTAAWRALNKRFDAQTQEARHACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDPVYLDILLSGL 174

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BLAST of mRNA_F-distichus_contig105959.508.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.160e-13
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 1

Query:    7 TAQNSPAVATWTRANKNLFGILFFTTERSAHNVVKKHMGKTREDGVGNGQAAWNALETKYNSNTKEGRRAYHEYLHSIKMKSGDDPNDFL 276
            TA N+  VA W +AN  LF +LFF T  SA   V+ H G    D +G+G AAW AL  ++++ T+E RRA H  L +++  +G DP DF 
Sbjct:   56 TAANAEDVAAWDKANGRLFSLLFFVTSGSAQLTVRTHEGAADSD-MGDGTAAWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFF 144

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BLAST of mRNA_F-distichus_contig105959.508.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.290e-13
Identity = 49/132 (37.12%), Postives = 68/132 (51.52%), Query Frame = 1

Query:    7 TAQNSPAVATWTRANKNLFGILFFTTERSAHNVVKKHMGKTREDGVGNGQAAWNALETKYNSNTKEGRRAYHEYLHS------------IKMKSGDDPNDFLYTMDGYRERLEDMGQPVPDERYEDIILQAL 366
            TA N+  VA W +AN  LF +LFF T  SA   V+ H G    D +G+G AAW AL  ++++ T E RRA H  L +            ++  +G DP DF       + RL+ +G+ V D  Y DI+L  L
Sbjct:   56 TAANAEDVAAWDKANGRLFSLLFFVTSGSAQLTVRTHGGAADSD-MGDGTAAWRALNERFDAQTLEARRACHNELFNEXXXXXXXXXXXLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDPVYLDIMLSGL 186

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BLAST of mRNA_F-distichus_contig105959.508.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.800e-13
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 1

Query:    7 TAQNSPAVATWTRANKNLFGILFFTTERSAHNVVKKHMGKTREDGVGNGQAAWNALETKYNSNTKEGRRAYHEYLHSIKMKSGDDPNDFLYTMDGYRERLEDMGQPVPDERYEDIILQAL 366
            TA N+  VA   +AN  L+ +LFF T  SA   V+   G    D +G+G AAW AL  ++++ T+E RRA H  L +++  +G DP DF       + RL+ +G+   D  Y DI+L  L
Sbjct:   38 TAANAEDVAACDKANGRLYSLLFFVTSGSAQLTVRNQGGAADSD-MGDGTAAWRALNDRFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEASDPVYLDIMLSGL 156

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BLAST of mRNA_F-distichus_contig105959.508.1 vs. uniprot
Match: A0A6H5KDC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.400e-11
Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = 1

Query:   16 NSPAVATWTRANKNLFGILFFTTERSAHNVVKKHMGKTREDGV-GNGQAAWNALETKYNSNTKEGRRAYHEYLHSIKMKSGDDPNDFLYTMDGYRERLEDMGQPVPDERYEDIILQALPAEY 378
            ++ A  ++TRAN++L+ ILF   E  A   ++KH   T   G+ G+GQAA+  L   Y+  T E  RA  E L +  M  G++P+D+       R +L+ MG+P+ D R++DI +Q    EY
Sbjct:   29 DTAAFDSYTRANEDLYAILFLLVELPAALSIQKHENDT---GISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDIRVQGFSDEY 147

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BLAST of mRNA_F-distichus_contig105959.508.1 vs. uniprot
Match: A0A6H5L2I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.280e-11
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 1

Query:   16 NSPAVATWTRANKNLFGILFFTTERSAHNVVKKHMGKTREDGV--GNGQAAWNALETKYNSNTKEGRRAYHEYLHSIKMKSGDDPNDFLYTMDGYRERLEDMGQPVPDERYEDIILQALPAEY 378
            ++ A  ++TRAN++L+ ILF   E  A   ++KH    ++D V  G+GQA++  L   Y+  T E  RA  E L +  M  G++P+D+       R +L+ MG+P+ D R++DI +Q    EY
Sbjct:   29 DTAAFDSYTRANEDLYAILFLLVELPAAVSIQKH----KDDTVIRGDGQASFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEY 147

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BLAST of mRNA_F-distichus_contig105959.508.1 vs. uniprot
Match: A0A6H5K0G3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.050e-11
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 1

Query:   13 QNSPAVATWTRANKNLFGILFFTTERSAHNVVKKHMGKTREDGV-GNGQAAWNALETKYNSNTKEGRRAYHEYLHSIKMKSGDDPNDFLYTMDGYRERLEDMGQPVPDERYEDIILQALPAEY 378
            +++ A  ++TRAN++L+ ILF   E  A   ++KH   T   G+ G+GQAA   L   Y+  T E  RA  E L +  M  G+DP+D+       R +L+ MG+P+ D R++DI +Q +  E+
Sbjct:    7 RDTAAFDSYTRANEDLYAILFLLVELPAALSIQKHKDDT---GISGDGQAACEELCNNYDRVTDEVIRAKMEELENNPMNPGEDPDDYCNQKHLLRTQLDTMGEPISDRRFKDICVQGISDEH 126

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BLAST of mRNA_F-distichus_contig105959.508.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.460e-10
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 1

Query:   16 NSPAVATWTRANKNLFGILFFTTERSAHNVVKKHMGKTREDGV-GNGQAAWNALETKYNSNTKEGRRAYHEYLHSIKMKSGDDPNDFLYTMDGYRERLEDMGQPVPDERYEDIILQALPAEY 378
            ++ A  ++TRAN++L+ ILF   E  A   ++KH   T   G+ G+GQAA+  L   Y+  T E  RA  E L +  M  G++P+D+       R +L+ MG+P+ D R +DI +Q    EY
Sbjct:   30 DTAAFDSYTRANEDLYAILFLLVELPAALSIQKHEDDT---GISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEY 148

The following BLAST results are available for this feature:

BLAST of mRNA_F-distichus_contig105959.508.1 vs. uniprot

BLAST of mRNA_F-distichus_contig105959.508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17


Match Name	E-value	Identity	Description
A0A6H5K1J1_9PHAE	9.790e-26	49.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KC00_9PHAE	8.600e-16	40.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JH28_9PHAE	2.860e-15	39.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J9Q7_9PHAE	4.160e-13	43.33	gag_pre-integrs domain-containing protein n=1 Tax=...	[more]
A0A6H5JIN1_9PHAE	4.290e-13	37.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKW9_9PHAE	5.800e-13	37.50	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KDC9_9PHAE	1.400e-11	36.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L2I7_9PHAE	2.280e-11	34.96	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0G3_9PHAE	6.050e-11	35.77	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KXR7_9PHAE	4.460e-10	36.07	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-distichus_contig105959	contig	F-distichus_contig105959:1560..1937 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	378
Cds size	378
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928986.1125636-CDS-F-distichus_contig105959:1559..1937	1622928986.1125636-CDS-F-distichus_contig105959:1559..1937	Fucus distichus monoicous	CDS	F-distichus_contig105959 1560..1937 -
1690885092.4542067-CDS-F-distichus_contig105959:1559..1937	1690885092.4542067-CDS-F-distichus_contig105959:1559..1937	Fucus distichus monoicous	CDS	F-distichus_contig105959 1560..1937 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-distichus_contig105959.508.1	prot_F-distichus_contig105959.508.1	Fucus distichus monoicous	polypeptide	F-distichus_contig105959 1560..1937 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-distichus_contig105959:1560..1937-
coding sequence from alignment at F-distichus_contig105959:1560..1937-

protein sequence of mRNA_F-distichus_contig105959.508.1

>prot_F-distichus_contig105959.508.1 ID=prot_F-distichus_contig105959.508.1|Name=mRNA_F-distichus_contig105959.508.1|organism=Fucus distichus monoicous|type=polypeptide|length=126bp
ATTAQNSPAVATWTRANKNLFGILFFTTERSAHNVVKKHMGKTREDGVGN
GQAAWNALETKYNSNTKEGRRAYHEYLHSIKMKSGDDPNDFLYTMDGYRE
RLEDMGQPVPDERYEDIILQALPAEY

mRNA from alignment at F-distichus_contig105959:1560..1937-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-distichus_contig105959.508.1 ID=mRNA_F-distichus_contig105959.508.1|Name=mRNA_F-distichus_contig105959.508.1|organism=Fucus distichus monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at F-distichus_contig105959:1560..1937- (Fucus distichus monoicous)
GCGACAACCGCACAAAATTCGCCGGCCGTGGCGACTTGGACGCGTGCGAA
CAAGAACCTTTTCGGCATCTTGTTCTTCACGACGGAGCGTTCTGCCCACA
ATGTCGTGAAAAAGCACATGGGAAAGACCCGGGAGGATGGGGTCGGTAAC
GGGCAAGCGGCGTGGAATGCCCTGGAAACGAAGTACAATAGTAACACAAA
GGAGGGTAGGAGGGCGTATCACGAATATTTGCACAGTATCAAGATGAAGT
CCGGCGATGATCCCAATGATTTTCTGTACACCATGGACGGCTATCGCGAG
CGTCTGGAAGATATGGGCCAGCCAGTACCCGACGAGCGGTACGAAGACAT
CATTCTTCAGGCCCTTCCTGCCGAGTAT

Coding sequence (CDS) from alignment at F-distichus_contig105959:1560..1937-

>mRNA_F-distichus_contig105959.508.1 ID=mRNA_F-distichus_contig105959.508.1|Name=mRNA_F-distichus_contig105959.508.1|organism=Fucus distichus monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at F-distichus_contig105959:1560..1937- (Fucus distichus monoicous)
GCGACAACCGCACAAAATTCGCCGGCCGTGGCGACTTGGACGCGTGCGAA
CAAGAACCTTTTCGGCATCTTGTTCTTCACGACGGAGCGTTCTGCCCACA
ATGTCGTGAAAAAGCACATGGGAAAGACCCGGGAGGATGGGGTCGGTAAC
GGGCAAGCGGCGTGGAATGCCCTGGAAACGAAGTACAATAGTAACACAAA
GGAGGGTAGGAGGGCGTATCACGAATATTTGCACAGTATCAAGATGAAGT
CCGGCGATGATCCCAATGATTTTCTGTACACCATGGACGGCTATCGCGAG
CGTCTGGAAGATATGGGCCAGCCAGTACCCGACGAGCGGTACGAAGACAT
CATTCTTCAGGCCCTTCCTGCCGAGTATGCGACAACCGCACAAAATTCGC
CGGCCGTGGCGACTTGGACGCGTGCGAACAAGAACCTTTTCGGCATCTTG
TTCTTCACGACGGAGCGTTCTGCCCACAATGTCGTGAAAAAGCACATGGG
AAAGACCCGGGAGGATGGGGTCGGTAACGGGCAAGCGGCGTGGAATGCCC
TGGAAACGAAGTACAATAGTAACACAAAGGAGGGTAGGAGGGCGTATCAC
GAATATTTGCACAGTATCAAGATGAAGTCCGGCGATGATCCCAATGATTT
TCTGTACACCATGGACGGCTATCGCGAGCGTCTGGAAGATATGGGCCAGC
CAGTACCCGACGAGCGGTACGAAGACATCATTCTTCAGGCCCTTCCTGCC
GAGTAT