mRNA_F-distichus_contig105939.506.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105939.506.1
Unique NamemRNA_F-distichus_contig105939.506.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig105939.506.1 vs. uniprot
Match: A0A6H5KYA6_9PHAE (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYA6_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 3.640e-71
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 1
Query:   16 IGQASMDAPKGENMDAGNLYGVMTIMATIFLAPFAVFVEGRQFKGLYDAAIAAGHTRAALLKGTFLSGIFFYMYNEVAFYCLNAIHPVTHAVANTLKRVFLIAVSIIVFGHKLTPLGSVGSAVAISGVLLYSLTKQKLSKK 438
            + +ASMD PKGENMDAGNLYGVMTI+ATI LAPFA  VEG+Q +GLYD AIAAGHT+  L KG  LSGIFFYMYNEVAFYCL+AIHPVTHAVANT+KRVFLIAVSI+VFGHKLTPLGS+GSAVAI+GVLLYSL KQK   K
Sbjct:  269 LAKASMDKPKGENMDAGNLYGVMTILATIMLAPFAWLVEGKQLQGLYDTAIAAGHTKKTLAKGALLSGIFFYMYNEVAFYCLDAIHPVTHAVANTVKRVFLIAVSILVFGHKLTPLGSIGSAVAIAGVLLYSLAKQKFPNK 409          
BLAST of mRNA_F-distichus_contig105939.506.1 vs. uniprot
Match: A0A835YPU6_9STRA (Triosephosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU6_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.380e-50
Identity = 84/135 (62.22%), Postives = 104/135 (77.04%), Query Frame = 1
Query:   16 IGQASMDAPKGENMDAGNLYGVMTIMATIFLAPFAVFVEGRQFKGLYDAAIAAGHTRAALLKGTFLSGIFFYMYNEVAFYCLNAIHPVTHAVANTLKRVFLIAVSIIVFGHKLTPLGSVGSAVAISGVLLYSLTK 420
            IG+ +M   KGENMDAGNLY VMT+MAT  L P A+ +EG + +GL+ AA+AAG +   L +   LSG+FFY+YNEVAFYCLNAIHP+TH + NT+KRV +IAVS+I F H+ TPLG VGSA AI GVLLYS+ K
Sbjct:  130 IGKRAMGRDKGENMDAGNLYAVMTMMATCVLTPLALVLEGPKLRGLWAAAVAAGASPGRLWRDIALSGVFFYLYNEVAFYCLNAIHPLTHGIGNTIKRVVMIAVSVIAFHHRFTPLGVVGSATAIGGVLLYSIVK 264          
BLAST of mRNA_F-distichus_contig105939.506.1 vs. uniprot
Match: A0A835ZDI5_9STRA (Triose-phosphate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI5_9STRA)

HSP 1 Score: 165 bits (417), Expect = 4.670e-47
Identity = 82/141 (58.16%), Postives = 105/141 (74.47%), Query Frame = 1
Query:   16 IGQASMDAPKGENMDAGNLYGVMTIMATIFLAPFAVFVEGRQFKGLYDAAIAAGHTRAALLKGTFLSGIFFYMYNEVAFYCLNAIHPVTHAVANTLKRVFLIAVSIIVFGHKLTPLGSVGSAVAISGVLLYSLTKQKLSKK 438
            + +  M   +  NMD GNLYGVMT++A   L P A+ VEG + K ++ AA AAGHT  A+ +G  LSG++FY+YNEVAFYCLN+I   THAV NT+KRV L+ VS++VFGH+LTPLG+ GSAVAI GVL+YSLTK   +KK
Sbjct:  181 LAKKQMGQVQAPNMDPGNLYGVMTLIAAAILFPAALVVEGPRIKAVWAAAQAAGHTSRAIWRGMILSGLYFYLYNEVAFYCLNSIDATTHAVGNTVKRVVLLGVSVLVFGHQLTPLGATGSAVAIGGVLVYSLTKNHYAKK 321          
BLAST of mRNA_F-distichus_contig105939.506.1 vs. uniprot
Match: A0A8J6C741_DIALT (TPT domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C741_DIALT)

HSP 1 Score: 165 bits (417), Expect = 5.000e-47
Identity = 79/132 (59.85%), Postives = 105/132 (79.55%), Query Frame = 1
Query:   28 SMDAPKGENMDAGNLYGVMTIMATIFLAPFAVFVEGRQFKGLYDAAIAAGHTRAALLKGTFLSGIFFYMYNEVAFYCLNAIHPVTHAVANTLKRVFLIAVSIIVFGHKLTPLGSVGSAVAISGVLLYSLTKQ 423
            +M+ P+GENM A NLYGV+TIM+ + L PFA+ +EG + KG + AAIAAGHT   LLK + +SG+F+Y+YNEVAF CL+ +HP+THAV NT+KRV +I  S++VFG K+TPL  +GS++AI GVLLYSL KQ
Sbjct:  236 AMEKPQGENMGAANLYGVLTIMSFLMLLPFALVLEGAKLKGGWAAAIAAGHTANYLLKTSLVSGLFYYLYNEVAFLCLDNVHPITHAVGNTIKRVVIILASVVVFGTKMTPLNQIGSSLAIFGVLLYSLAKQ 367          
BLAST of mRNA_F-distichus_contig105939.506.1 vs. uniprot
Match: A0A836CHH7_9STRA (Plastidic triose-phosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH7_9STRA)

HSP 1 Score: 159 bits (403), Expect = 8.840e-45
Identity = 78/141 (55.32%), Postives = 106/141 (75.18%), Query Frame = 1
Query:   16 IGQASMDAPKGENMDAGNLYGVMTIMATIFLAPFAVFVEGRQFKGLYDAAIAAGHTRAALLKGTFLSGIFFYMYNEVAFYCLNAIHPVTHAVANTLKRVFLIAVSIIVFGHKLTPLGSVGSAVAISGVLLYSLTKQKLSKK 438
            + + SM  PKG NM A NLYGV+TI+AT  L P A  +EG +F   +DAA+  G+++ A+ K   LSG++FY+YNEVAF  L+A+HPV HAV NTLKRVF+IA  +I+FG+K+TPLG VGS++AI GVL++SL K+  S+K
Sbjct:  245 LAKRSMGRPKGTNMGAANLYGVLTILATAMLVPVAGVLEGPKFSAKWDAALLKGYSQDAITKHALLSGLYFYLYNEVAFLALDAVHPVVHAVGNTLKRVFIIASGVILFGNKITPLGMVGSSLAIVGVLIFSLVKEYYSRK 385          
BLAST of mRNA_F-distichus_contig105939.506.1 vs. uniprot
Match: D8LKK2_ECTSI (Triosephosphate/phosphate translocator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK2_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.380e-40
Identity = 70/130 (53.85%), Postives = 96/130 (73.85%), Query Frame = 1
Query:   46 GENMDAGNLYGVMTIMATIFLAPFAVFVEGRQFKGLYDAAIAAGHTRAALLKGTFLSGIFFYMYNEVAFYCLNAIHPVTHAVANTLKRVFLIAVSIIVFGHKLTPLGSVGSAVAISGVLLYSLTKQKLSK 435
            G  M AGNLY VMT++  + L P A++VEG +   +++AA++AGH++ +L+K   LSG+FFY+YNEV+FY LN IHPVTHA+ NTLKRV +I VS++V  H+ TPLG  G   AI GV+ YSLTK +L +
Sbjct:  131 GGAMCAGNLYAVMTMLGCLVLTPAALWVEGPRVASVWNAALSAGHSQRSLVKNVLLSGVFFYLYNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTKARLEQ 260          
BLAST of mRNA_F-distichus_contig105939.506.1 vs. uniprot
Match: A0A835Z581_9STRA (TPT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z581_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.340e-39
Identity = 70/141 (49.65%), Postives = 95/141 (67.38%), Query Frame = 1
Query:   16 IGQASMDAPKGENMDAGNLYGVMTIMATIFLAPFAVFVEGRQFKGLYDAAIAAGHTRAALLKGTFLSGIFFYMYNEVAFYCLNAIHPVTHAVANTLKRVFLIAVSIIVFGHKLTPLGSVGSAVAISGVLLYSLTKQKLSKK 438
            +G+  M  P GENM+A NLY V+T++A   L P A+ VEG +F G++ AA+AAGHT+  L     +SG+F+Y+YNEVAF  L ++HPVTHAV NT+KRV +I  S++ F   ++     GSA+AI G L YSL KQ   KK
Sbjct:   19 MGKKQMGKPVGENMNAANLYAVLTVIAFCVLTPVALLVEGGKFGGVWKAALAAGHTKKILYTNILMSGLFYYLYNEVAFLALESVHPVTHAVGNTIKRVVIIVSSVLFFRTPMSRQSVAGSAIAILGTLGYSLVKQAYDKK 159          
BLAST of mRNA_F-distichus_contig105939.506.1 vs. uniprot
Match: A0A6H5L1D6_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D6_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 7.930e-39
Identity = 70/130 (53.85%), Postives = 96/130 (73.85%), Query Frame = 1
Query:   46 GENMDAGNLYGVMTIMATIFLAPFAVFVEGRQFKGLYDAAIAAGHTRAALLKGTFLSGIFFYMYNEVAFYCLNAIHPVTHAVANTLKRVFLIAVSIIVFGHKLTPLGSVGSAVAISGVLLYSLTKQKLSK 435
            G  M AGNLY VMT++  + L P A++VEG +   +++AA++AGH++ +L+K   LSG+FFY+YNEV+FY LN IHPVTHA+ NTLKRV +I VS++V  H+ TPLG  G   AI GV+ YSLTK +L +
Sbjct:  326 GGAMCAGNLYAVMTMLGCLVLTPAALWVEGPRVASVWNAALSAGHSQRSLVKNVLLSGVFFYLYNEVSFYALNIIHPVTHALGNTLKRVVMIIVSVLVLNHRFTPLGLAGCTTAIGGVMAYSLTKARLEQ 455          
BLAST of mRNA_F-distichus_contig105939.506.1 vs. uniprot
Match: A0A6H5KC08_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC08_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 8.750e-39
Identity = 73/141 (51.77%), Postives = 97/141 (68.79%), Query Frame = 1
Query:   16 IGQASMDAPKGENMDAGNLYGVMTIMATIFLAPFAVFVEGRQFKGLYDAAIAAGHTRAALLKGTFLSGIFFYMYNEVAFYCLNAIHPVTHAVANTLKRVFLIAVSIIVFGHKLTPLGSVGSAVAISGVLLYSLTKQKLSKK 438
            + + SM    G+NM   NLY V+TIMA+  L P +  VEG + + L+++ +        ++  T  SG+FFY+YNEVAF CL  +HPVTHAV NT KRVFLIA SIIVF  KLTPL ++GS +AI+GVLLYSLTK+  +K+
Sbjct:  247 LSKRSMGMDMGKNMSPANLYAVLTIMASAMLLPLSAIVEGPKIQELWESTVTTPEKGNEIIYNTVASGVFFYLYNEVAFRCLGVVHPVTHAVGNTFKRVFLIATSIIVFKSKLTPLAAMGSFMAIAGVLLYSLTKEWCAKQ 387          
BLAST of mRNA_F-distichus_contig105939.506.1 vs. uniprot
Match: D8LC95_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC95_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.020e-38
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = 1
Query:   16 IGQASMDAPKGENMDAGNLYGVMTIMATIFLAPFAVFVEGRQFKGLYDAAIAAGHTRAALLKGTFLSGIFFYMYNEVAFYCLNAIHPVTHAVANTLKRVFLIAVSIIVFGHKLTPLGSVGSAVAISGVLLYSLTKQKLSKK 438
            +G+  M  P GENM   NLY V+T++A  FL+P A+ VEGR+ K  +DAAIAAG T   L     LSG+F+Y+YNEVAF  L++++PVTHAV NT+KRV +I  + I F   +TPL   GS +A++G LLYSL K    KK
Sbjct:  267 LGKKQMGKPVGENMSPANLYAVLTVLAFCFLSPVALLVEGRKAKPAWDAAIAAGATAKGLSSTILLSGLFYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVAACIAFRTPMTPLSIAGSTIAVAGTLLYSLVKAHYEKK 407          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105939.506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYA6_9PHAE3.640e-7180.85TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YPU6_9STRA3.380e-5062.22Triosephosphate/phosphate translocator n=1 Tax=Tri... [more]
A0A835ZDI5_9STRA4.670e-4758.16Triose-phosphate transporter family-domain-contain... [more]
A0A8J6C741_DIALT5.000e-4759.85TPT domain-containing protein n=2 Tax=Diacronema l... [more]
A0A836CHH7_9STRA8.840e-4555.32Plastidic triose-phosphate/phosphate translocator ... [more]
D8LKK2_ECTSI2.380e-4053.85Triosephosphate/phosphate translocator n=1 Tax=Ect... [more]
A0A835Z581_9STRA1.340e-3949.65TPT domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5L1D6_9PHAE7.930e-3953.85TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KC08_9PHAE8.750e-3951.77TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LC95_ECTSI3.020e-3851.06TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105939contigF-distichus_contig105939:226..1102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.8
Seed ortholog evalue1.7e-57
Seed eggNOG ortholog2880.D8LJY5
Preferred nameSLC35E3
KEGG koko:K06643,ko:K15285
KEGG Pathwayko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
EC2.3.2.27
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04121,ko04131
Exons2
Model size441
Cds size441
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.708021-CDS-F-distichus_contig105939:225..4641622928985.708021-CDS-F-distichus_contig105939:225..464Fucus distichus monoicousCDSF-distichus_contig105939 226..464 +
1690885092.410009-CDS-F-distichus_contig105939:225..4641690885092.410009-CDS-F-distichus_contig105939:225..464Fucus distichus monoicousCDSF-distichus_contig105939 226..464 +
1622928985.8120754-CDS-F-distichus_contig105939:900..11021622928985.8120754-CDS-F-distichus_contig105939:900..1102Fucus distichus monoicousCDSF-distichus_contig105939 901..1102 +
1690885092.421023-CDS-F-distichus_contig105939:900..11021690885092.421023-CDS-F-distichus_contig105939:900..1102Fucus distichus monoicousCDSF-distichus_contig105939 901..1102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105939.506.1prot_F-distichus_contig105939.506.1Fucus distichus monoicouspolypeptideF-distichus_contig105939 226..1102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105939.506.1

>prot_F-distichus_contig105939.506.1 ID=prot_F-distichus_contig105939.506.1|Name=mRNA_F-distichus_contig105939.506.1|organism=Fucus distichus monoicous|type=polypeptide|length=147bp
MANNNIGQASMDAPKGENMDAGNLYGVMTIMATIFLAPFAVFVEGRQFKG
LYDAAIAAGHTRAALLKGTFLSGIFFYMYNEVAFYCLNAIHPVTHAVANT
LKRVFLIAVSIIVFGHKLTPLGSVGSAVAISGVLLYSLTKQKLSKK*
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mRNA from alignment at F-distichus_contig105939:226..1102+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105939.506.1 ID=mRNA_F-distichus_contig105939.506.1|Name=mRNA_F-distichus_contig105939.506.1|organism=Fucus distichus monoicous|type=mRNA|length=877bp|location=Sequence derived from alignment at F-distichus_contig105939:226..1102+ (Fucus distichus monoicous)
ATGGCGAATAATAATATCGGGCAGGCTTCTATGGACGCACCGAAGGGCGA GAACATGGACGCCGGTAACCTCTACGGCGTAATGACCATTATGGCAACGA TCTTCCTGGCTCCATTCGCCGTCTTTGTGGAAGGCCGCCAGTTCAAGGGC CTGTACGATGCCGCCATCGCCGCGGGGCACACAAGGGCTGCGCTGCTCAA GGGTACTTTTTTGAGCGGGATCTTCTTTTATATGTACAAGTGAGAGCGGT GTTGGATCATCAACCAGGGAGAGATCCCTCAGGATTCCACTCTCGTGTTC GTATGCCGAAACGTCTAACGGGGCGTACTAAGAATAACTGCTGTAGCATC ATCTCGTCTCATCTCGTCTTTAGAGGGAATCCGGGCAGAGTGGCTCTTTT GTTTTGCCAGGGGATGTCGTCGACGAAATCCCCACAACCAAGAACCGTTC GTATCCGAATGTCATGTTTCTATCGCAAGCAAATATATGACAGAGAACAA GGCCCGCATTTCTCCCTTCGTGGTTCTCGGAAGGGTGGCGATGGTGGAGG TATTCGTGATGCATCGGTGTTTTTTACTTAACGACATACAGTTTGTATAA CGCAAGTCCCGCGGTAACCCGCGTTGCGCACACCTTGCCCACTTTCCGCG TCGCCGCCACCCGTGGGTCTACCAGCGAGGTGGCCTTCTATTGCCTGAAC GCTATCCATCCAGTCACGCACGCGGTGGCCAACACGCTCAAGCGCGTATT CCTCATCGCCGTGAGCATCATCGTGTTCGGTCACAAGCTCACCCCGCTTG GTAGCGTAGGGTCCGCGGTGGCGATTAGCGGAGTGCTTCTCTATTCTCTC ACCAAGCAGAAGTTGTCCAAGAAGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig105939:226..1102+

>mRNA_F-distichus_contig105939.506.1 ID=mRNA_F-distichus_contig105939.506.1|Name=mRNA_F-distichus_contig105939.506.1|organism=Fucus distichus monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at F-distichus_contig105939:226..1102+ (Fucus distichus monoicous)
ATGGCGAATAATAATATCGGGCAGGCTTCTATGGACGCACCGAAGGGCGA
GAACATGGACGCCGGTAACCTCTACGGCGTAATGACCATTATGGCAACGA
TCTTCCTGGCTCCATTCGCCGTCTTTGTGGAAGGCCGCCAGTTCAAGGGC
CTGTACGATGCCGCCATCGCCGCGGGGCACACAAGGGCTGCGCTGCTCAA
GGGTACTTTTTTGAGCGGGATCTTCTTTTATATGTACAAATGGCGAATAA
TAATATCGGGCAGGCTTCTATGGACGCACCGAAGGGCGAGAACATGGACG
CCGGTAACCTCTACGGCGTAATGACCATTATGGCAACGATCTTCCTGGCT
CCATTCGCCGTCTTTGTGGAAGGCCGCCAGTTCAAGGGCCTGTACGATGC
CGCCATCGCCGCGGGGCACACAAGGGCTGCGCTGCTCAAGGGTACTTTTT
TGAGCGGGATCTTCTTTTATATGTACAACGAGGTGGCCTTCTATTGCCTG
AACGCTATCCATCCAGTCACGCACGCGGTGGCCAACACGCTCAAGCGCGT
ATTCCTCATCGCCGTGAGCATCATCGTGTTCGGTCACAAGCTCACCCCGC
TTGGTAGCGTAGGGTCCGCGGTGGCGATTAGCGGAGTGCTTCTCTATTCT
CTCACCAAGCAGAAGTTGTCCAAGAAGTGACGAGGTGGCCTTCTATTGCC
TGAACGCTATCCATCCAGTCACGCACGCGGTGGCCAACACGCTCAAGCGC
GTATTCCTCATCGCCGTGAGCATCATCGTGTTCGGTCACAAGCTCACCCC
GCTTGGTAGCGTAGGGTCCGCGGTGGCGATTAGCGGAGTGCTTCTCTATT
CTCTCACCAAGCAGAAGTTGTCCAAGAAGTGA
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