mRNA_F-distichus_contig105844.498.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105844.498.1
Unique NamemRNA_F-distichus_contig105844.498.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105844.498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105844contigF-distichus_contig105844:9..1272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue8e-14
Seed eggNOG ortholog2880.D7G6N9
KEGG koko:K10357
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Exons2
Model size241
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.354805-CDS-F-distichus_contig105844:8..801622928984.354805-CDS-F-distichus_contig105844:8..80Fucus distichus monoicousCDSF-distichus_contig105844 9..80 +
1690885091.8271463-CDS-F-distichus_contig105844:8..801690885091.8271463-CDS-F-distichus_contig105844:8..80Fucus distichus monoicousCDSF-distichus_contig105844 9..80 +
1622928984.3746626-CDS-F-distichus_contig105844:1103..12711622928984.3746626-CDS-F-distichus_contig105844:1103..1271Fucus distichus monoicousCDSF-distichus_contig105844 1104..1271 +
1690885091.8478105-CDS-F-distichus_contig105844:1103..12711690885091.8478105-CDS-F-distichus_contig105844:1103..1271Fucus distichus monoicousCDSF-distichus_contig105844 1104..1271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105844.498.1prot_F-distichus_contig105844.498.1Fucus distichus monoicouspolypeptideF-distichus_contig105844 9..1271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105844.498.1

>prot_F-distichus_contig105844.498.1 ID=prot_F-distichus_contig105844.498.1|Name=mRNA_F-distichus_contig105844.498.1|organism=Fucus distichus monoicous|type=polypeptide|length=80bp
HAARVLRRWVSLVRRRRLVRSVLQPFMLKSAAILKYLRAADHFRRLLLEQ
RMSTAIVRWYRGARDRKRFLKQKAASAIVQ
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mRNA from alignment at F-distichus_contig105844:9..1272+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105844.498.1 ID=mRNA_F-distichus_contig105844.498.1|Name=mRNA_F-distichus_contig105844.498.1|organism=Fucus distichus monoicous|type=mRNA|length=1264bp|location=Sequence derived from alignment at F-distichus_contig105844:9..1272+ (Fucus distichus monoicous)
CATGCCGCGCGAGTGCTCCGGCGCTGGGTGTCGCTTGTTCGACGCAGGAG
GCTTGTGCGTTCCGTCCTTCAGGTATCGTTTTGGAATAGGGAAAACATGT
GCTCGTGCTCGGACATGGTACAAGTTTATCTTGCCTTTTTGTTTTGTTTT
TGTGTTTGGTTTTCCTACATGACGATTTTAAAAGAAAAATTAGAACAATC
CTTACGTGATTGTACAGTAGTATACGGTGCTGGGTTCCTCCCCGACAGTT
TACTGTTGACCCAAGCTCCTATTTTTGTGGTTCAATGACCCTTCTTTTGA
GCTAACTCTTATCCCCATAAAACAAATGTATGTACCACTACCGATATCCT
TCCTATCCCTTACTCATGCTGTCATAAATATTAATATGTAAGATATTGTG
AATTACAAACGCCATTAGCGCTACTGGCGAGCATGTACTGCTGCTGTACT
GTAGAGTAACATTATCACTTATCTATCTATAACTTGTAGACCTCCTTGAT
CGACACCAATCCGACCCTAGACCTATTAATAATGTAACAAATTCAGCTGT
TTCCTATTAATAGCTTATCGTTCCTTTTGTAATTGTTTTCTTTTGGTGCC
CCTGCATGGTAATCAATTTGAGTGGACAGTAATGCCACGAAGAAGCTGTG
TTTTTAGACTAACAAACAACAGAAGGTCTAGGCGCGTTCTGTATTTTCTT
CAAACAATAATTTTATACACGGTATAGCAGAATATCCCTGCCGACTTGTT
GTAAAATGTAAATGTATTTTTCATTACCAACTACAATATTGTAACATTGC
TTATGTTCTAGACTATAAGCCCCTTTATTGTATACCTGGTATTAATACCA
ACCTATTTTATGATGTACTAAAACAAAAACAAACAAAAAACGCAAGGAGG
TTCTCAAACGGGACAAAACTATTGGCGCCTACACGCTCAGGAACTGCGAA
TGCCATGGTAGTGCAATTTTATTCATTTTAGTACAAGTCGTGGATGACGC
TCCTCCACTCTTGCTCTACCGCCTTTTTTTGCGCCTTGCGTTGTACCGAT
GGTGACGACGCTGCTCACTCGACAACCCACCCGCGATGCTCGCAGCCGTT
TATGCTGAAATCTGCGGCGATCCTCAAGTACCTGAGGGCGGCTGACCACT
TCAGGCGCCTTCTCCTCGAACAGCGCATGTCGACGGCCATAGTTCGATGG
TACCGAGGCGCCAGAGACAGGAAGCGCTTCTTGAAGCAGAAGGCTGCGTC
GGCCATCGTCCAGG
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Coding sequence (CDS) from alignment at F-distichus_contig105844:9..1272+

>mRNA_F-distichus_contig105844.498.1 ID=mRNA_F-distichus_contig105844.498.1|Name=mRNA_F-distichus_contig105844.498.1|organism=Fucus distichus monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at F-distichus_contig105844:9..1272+ (Fucus distichus monoicous)
CATGCCGCGCGAGTGCTCCGGCGCTGGGTGTCGCTTGTTCGACGCAGGAG
GCTTGTGCGTTCCGTCCTTCAGCATGCCGCGCGAGTGCTCCGGCGCTGGG
TGTCGCTTGTTCGACGCAGGAGGCTTGTGCGTTCCGTCCTTCAGCCGTTT
ATGCTGAAATCTGCGGCGATCCTCAAGTACCTGAGGGCGGCTGACCACTT
CAGGCGCCTTCTCCTCGAACAGCGCATGTCGACGGCCATAGTTCGATGGT
ACCGAGGCGCCAGAGACAGGAAGCGCTTCTTGAAGCAGAAGGCTGCGTCG
GCCATCGTCCAGCCGTTTATGCTGAAATCTGCGGCGATCCTCAAGTACCT
GAGGGCGGCTGACCACTTCAGGCGCCTTCTCCTCGAACAGCGCATGTCGA
CGGCCATAGTTCGATGGTACCGAGGCGCCAGAGACAGGAAGCGCTTCTTG
AAGCAGAAGGCTGCGTCGGCCATCGTCCAG
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