mRNA_F-distichus_contig105813.490.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105813.490.1
Unique NamemRNA_F-distichus_contig105813.490.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105813.490.1 vs. uniprot
Match: A0A6H5JGY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY8_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.680e-57
Identity = 87/105 (82.86%), Postives = 99/105 (94.29%), Query Frame = 1 
Query:   13 KFEVRVVCWRSEDVVACDDFTGLRDLYCKLWMETDSTKKRETDTHWRCRNGKGSWNYRVKFDVELPLKSPEHGRLAFQMWDRDVLSPNNIIAETTINLYKWFLKV 327
            K EVRVV WRSEDVVAC+DF+GLRDLYC++WMETDS KKR+TDTHWRCRNGKGSWNYR+KFDV+LPLKSPEHGR+  QMWDRDVLS N+IIAET+I+LY+WFLKV
Sbjct: 1699 KVEVRVVVWRSEDVVACNDFSGLRDLYCRMWMETDSKKKRDTDTHWRCRNGKGSWNYRLKFDVDLPLKSPEHGRMVLQMWDRDVLSANDIIAETSIDLYRWFLKV 1803
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BLAST of mRNA_F-distichus_contig105813.490.1 vs. uniprot
Match: D8LKV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKV5_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 5.810e-57
Identity = 86/108 (79.63%), Postives = 100/108 (92.59%), Query Frame = 1 
Query:   13 KFEVRVVCWRSEDVVACDDFTGLRDLYCKLWMETDSTKKRETDTHWRCRNGKGSWNYRVKFDVELPLKSPEHGRLAFQMWDRDVLSPNNIIAETTINLYKWFLKVRLL 336
            K EVRVV WRSEDVVAC+DF+GLRDLYC++WMETDS KKR+TDTHWRC+NGKGSWNYR+KFDV+LPLKSPEHGR+  QMWDRDVLS N+IIAET+I+LY+WFLK  +L
Sbjct: 1780 KVEVRVVVWRSEDVVACNDFSGLRDLYCRMWMETDSKKKRDTDTHWRCKNGKGSWNYRLKFDVDLPLKSPEHGRMVLQMWDRDVLSANDIIAETSIDLYRWFLKAEVL 1887
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BLAST of mRNA_F-distichus_contig105813.490.1 vs. uniprot
Match: A0A3L6VZ18_9STRA (C2 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VZ18_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.380e-33
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   13 KFEVRVVCWRSEDVVACDDFTGLRDLYCKLWMETDSTKKRETDTHWRCRNGKGSWNYRVKFDVELPLKSPEHGRLAFQMWDRDVLSPNNIIAETTINLYKWFLK 324
            KFE+RVV WRSE V    D   + DL+ K WME   TK + TDTHWRC  GKGSWNYR+KF V++P+K PE+GRL  Q+WD+D+   N++I E+ ++LYKW  K
Sbjct:   30 KFEIRVVIWRSEGVTD-RDMNTMNDLFVKAWME--GTKPQTTDTHWRCSTGKGSWNYRLKFTVQMPMK-PEYGRLTIQLWDKDLAKWNDLIGESQLDLYKWIHK 129
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BLAST of mRNA_F-distichus_contig105813.490.1 vs. uniprot
Match: A0A396ZTQ5_9STRA (C2 domain-containing protein (Fragment) n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZTQ5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.780e-32
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   13 KFEVRVVCWRSEDVVACDDFTGLRDLYCKLWMETDSTKKRETDTHWRCRNGKGSWNYRVKFDVELPLKSPEHGRLAFQMWDRDVLSPNNIIAETTINLYKWFLK 324
            KFE+RVV WRSE V    D   + DL+ K WME   TK + TDTHWRC  GKGSWNYR+KF V++P+K PE+GRL  Q+WD+D+   N++I E+ ++LYKW  K
Sbjct:   75 KFEIRVVIWRSEGVTD-RDMNTMNDLFVKAWME--GTKPQTTDTHWRCSTGKGSWNYRLKFTVQMPMK-PEYGRLTIQLWDKDLAKWNDLIGESQLDLYKWIHK 174
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BLAST of mRNA_F-distichus_contig105813.490.1 vs. uniprot
Match: A0A397C6Y4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C6Y4_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.050e-31
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   13 KFEVRVVCWRSEDVVACDDFTGLRDLYCKLWMETDSTKKRETDTHWRCRNGKGSWNYRVKFDVELPLKSPEHGRLAFQMWDRDVLSPNNIIAETTINLYKWFLK 324
            KFE+RVV WRSE V    D   + DL+ K WME   TK + TDTHWRC  GKGSWNYR+KF V++P+K PE+GRL  Q+WD+D+   N++I E+ ++LYKW  K
Sbjct:  193 KFEIRVVIWRSEGVTD-RDMNTMNDLFVKAWME--GTKPQTTDTHWRCSTGKGSWNYRLKFTVQMPMK-PEYGRLTIQLWDKDLAKWNDLIGESQLDLYKWIHK 292
[Close]
BLAST of mRNA_F-distichus_contig105813.490.1 vs. uniprot
Match: A0A397CFL8_9STRA (C2 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CFL8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.460e-31
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   13 KFEVRVVCWRSEDVVACDDFTGLRDLYCKLWMETDSTKKRETDTHWRCRNGKGSWNYRVKFDVELPLKSPEHGRLAFQMWDRDVLSPNNIIAETTINLYKWFLK 324
            KFE+RVV WRSE V    D   + DL+ K WME   TK + TDTHWRC  GKGSWNYR+KF V++P+K PE+GRL  Q+WD+D+   N++I E+ ++LYKW  K
Sbjct:  164 KFEIRVVIWRSEGVTD-RDMNTMNDLFVKAWME--GTKPQTTDTHWRCSTGKGSWNYRLKFTVQMPMK-PEYGRLTIQLWDKDLAKWNDLIGESQLDLYKWIHK 263
[Close]
BLAST of mRNA_F-distichus_contig105813.490.1 vs. uniprot
Match: W4G7X7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7X7_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.960e-31
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   13 KFEVRVVCWRSEDVVACDDFTGLRDLYCKLWMETDSTKKRETDTHWRCRNGKGSWNYRVKFDVELPLKSPEHGRLAFQMWDRDVLSPNNIIAETTINLYKWFLK 324
            KFEVRVV WRSE V    D   + DL+ K WME   TK + TDTHWRC  GKGSWNYR+KF V++P+K PE+GRL  Q+WD+D+   N++I E+ ++LYKW  K
Sbjct: 1440 KFEVRVVIWRSEGVTD-RDMNTMNDLFVKAWME--GTKPQTTDTHWRCSTGKGSWNYRLKFTVQMPMK-PEYGRLTIQLWDKDLAKWNDLIGESQLDLYKWIHK 1539
[Close]
BLAST of mRNA_F-distichus_contig105813.490.1 vs. uniprot
Match: A0A418CP32_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418CP32_9STRA)

HSP 1 Score: 124 bits (312), Expect = 7.620e-31
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   13 KFEVRVVCWRSEDVVACDDFTGLRDLYCKLWMETDSTKKRETDTHWRCRNGKGSWNYRVKFDVELPLKSPEHGRLAFQMWDRDVLSPNNIIAETTINLYKWFLK 324
            KFE+RVV WRSE V    D   + DL+ K WME   TK + TDTHWRC  GKGSWNYR+KF V++P+K PE+GRL  Q+WD+D+   N++I E+ ++LYKW  K
Sbjct:  489 KFEIRVVIWRSEGVTD-RDMNTMNDLFVKAWME--GTKPQTTDTHWRCSTGKGSWNYRLKFTVQMPMK-PEYGRLTIQLWDKDLAKWNDLIGESQLDLYKWIHK 588
[Close]
BLAST of mRNA_F-distichus_contig105813.490.1 vs. uniprot
Match: A0A397AE31_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AE31_9STRA)

HSP 1 Score: 124 bits (312), Expect = 7.960e-31
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   13 KFEVRVVCWRSEDVVACDDFTGLRDLYCKLWMETDSTKKRETDTHWRCRNGKGSWNYRVKFDVELPLKSPEHGRLAFQMWDRDVLSPNNIIAETTINLYKWFLK 324
            KFE+RVV WRSE V    D   + DL+ K WME   TK + TDTHWRC  GKGSWNYR+KF V++P+K PE+GRL  Q+WD+D+   N++I E+ ++LYKW  K
Sbjct:  800 KFEIRVVIWRSEGVTD-RDMNTMNDLFVKAWME--GTKPQTTDTHWRCSTGKGSWNYRLKFTVQMPMK-PEYGRLTIQLWDKDLAKWNDLIGESQLDLYKWIHK 899
[Close]
BLAST of mRNA_F-distichus_contig105813.490.1 vs. uniprot
Match: F0Y840_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y840_AURAN)

HSP 1 Score: 124 bits (312), Expect = 8.150e-31
Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:   13 KFEVRVVCWRSEDVVACDDFTGLRDLYCKLWMETDSTKKRETDTHWRCRNGKGSWNYRVKFDVELPLKSPEHGRLAFQMWDRDVLSPNNIIAETTINLYKWFLK 324
            KFEVRV+CW+S+DV        + D + + W+    ++K++TD HWRCRNGK SWN+RVK  VELPL SPE GRL  Q+WD+D++  N++I E  ++LY+WFLK
Sbjct: 1589 KFEVRVICWKSKDVPF-----EMGDYFAEFWI--GQSRKQKTDVHWRCRNGKASWNWRVKIPVELPLDSPEMGRLNIQLWDQDIIKWNDVIGECQVDLYRWFLK 1685
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105813.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGY8_9PHAE1.680e-5782.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKV5_ECTSI5.810e-5779.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3L6VZ18_9STRA3.380e-3354.81C2 domain-containing protein (Fragment) n=2 Tax=Ap... [more]
A0A396ZTQ5_9STRA3.780e-3254.81C2 domain-containing protein (Fragment) n=4 Tax=Ap... [more]
A0A397C6Y4_9STRA1.050e-3154.81Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A397CFL8_9STRA1.460e-3154.81C2 domain-containing protein (Fragment) n=1 Tax=Ap... [more]
W4G7X7_9STRA5.960e-3155.77Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A418CP32_9STRA7.620e-3154.81Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397AE31_9STRA7.960e-3154.81Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
F0Y840_AURAN8.150e-3151.92Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105813contigF-distichus_contig105813:763..1570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.7
Seed ortholog evalue3.7e-49
Seed eggNOG ortholog2880.D8LKV5
KEGG koko:K19949,ko:K22125,ko:K22127
Hectar predicted targeting categoryother localisation
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size342
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105813.490.1prot_F-distichus_contig105813.490.1Fucus distichus monoicouspolypeptideF-distichus_contig105813 763..1570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.4496267-CDS-F-distichus_contig105813:762..8581622928982.4496267-CDS-F-distichus_contig105813:762..858Fucus distichus monoicousCDSF-distichus_contig105813 763..858 -
1690885091.277201-CDS-F-distichus_contig105813:762..8581690885091.277201-CDS-F-distichus_contig105813:762..858Fucus distichus monoicousCDSF-distichus_contig105813 763..858 -
1622928982.463574-CDS-F-distichus_contig105813:1113..11911622928982.463574-CDS-F-distichus_contig105813:1113..1191Fucus distichus monoicousCDSF-distichus_contig105813 1114..1191 -
1690885091.2876377-CDS-F-distichus_contig105813:1113..11911690885091.2876377-CDS-F-distichus_contig105813:1113..1191Fucus distichus monoicousCDSF-distichus_contig105813 1114..1191 -
1622928982.4790964-CDS-F-distichus_contig105813:1402..15701622928982.4790964-CDS-F-distichus_contig105813:1402..1570Fucus distichus monoicousCDSF-distichus_contig105813 1403..1570 -
1690885091.2967865-CDS-F-distichus_contig105813:1402..15701690885091.2967865-CDS-F-distichus_contig105813:1402..1570Fucus distichus monoicousCDSF-distichus_contig105813 1403..1570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105813.490.1

>prot_F-distichus_contig105813.490.1 ID=prot_F-distichus_contig105813.490.1|Name=mRNA_F-distichus_contig105813.490.1|organism=Fucus distichus monoicous|type=polypeptide|length=114bp
MNENKFEVRVVCWRSEDVVACDDFTGLRDLYCKLWMETDSTKKRETDTHW
RCRNGKGSWNYRVKFDVELPLKSPEHGRLAFQMWDRDVLSPNNIIAETTI
NLYKWFLKVRLLL*
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mRNA from alignment at F-distichus_contig105813:763..1570-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105813.490.1 ID=mRNA_F-distichus_contig105813.490.1|Name=mRNA_F-distichus_contig105813.490.1|organism=Fucus distichus monoicous|type=mRNA|length=808bp|location=Sequence derived from alignment at F-distichus_contig105813:763..1570- (Fucus distichus monoicous)
ATGAACGAAAACAAGTTTGAGGTGAGGGTGGTGTGCTGGAGGAGCGAGGA
CGTTGTGGCGTGCGACGACTTCACCGGCCTTCGTGATCTGTACTGCAAGC
TTTGGATGGAGACAGACTCGACCAAGAAGAGGGAAACCGACACGCACTGG
CGCTGCAGAAACGGCAAGGTGCGGTGCGCGGTTCTTTCTTGGCCTGCTCC
ATAGGGAGACAGAGAGCTCACTGTAAGTTATAGGTGTCAAAATTATGCAT
CCGTCGCGCAATCCCAAGACGGGGACGGGAGCAGAAAAACATTTCCGGGT
CTTTTTTTTTGTTCCGCCTCTCCAAGGCTCCCTCCGTCCCTTGCCCTCCC
CCCTTTCCGCCCCCCTTCCCCCCCACTAGGGATCGTGGAACTATAGGGTA
AAGTTCGACGTCGAGCTACCTCTCAAGAGTCCCGAGCACGGCCGGCTTGC
CTTCCAGGTAACACCTCCTCCGCCGCAATCTTTTGAAATGCATTTTTAGT
TTACGTTTTTTTTCGGCGTCGTCGAAATACGCACGCAGATGTTGCCATCC
TTGTGTGGCAGCACGTGAAATAACATGGGATGCGATAGCGCGTTGTGGGC
GGACGCGCGGCAAGCGAAAGTCTGTATCAACGCCTCACATCTGTAATATA
TTTGCTTTCCACTACCGTAATATATACATATATAATATCTGTCGACTGTG
TGAACTGTCCAGATGTGGGATCGTGACGTGCTAAGTCCAAACAACATCAT
CGCAGAGACGACCATTAACCTCTACAAATGGTTCCTAAAGGTACGATTAC
TGCTGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig105813:763..1570-

>mRNA_F-distichus_contig105813.490.1 ID=mRNA_F-distichus_contig105813.490.1|Name=mRNA_F-distichus_contig105813.490.1|organism=Fucus distichus monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at F-distichus_contig105813:763..1570- (Fucus distichus monoicous)
ATGAACGAAAACAAGTTTGAGGTGAGGGTGGTGTGCTGGAGGAGCGAGGA
CGTTGTGGCGTGCGACGACTTCACCGGCCTTCGTGATCTGTACTGCAAGC
TTTGGATGGAGACAGACTCGACCAAGAAGAGGGAAACCGACACGCACTGG
CGCTGCAGAAACGGCAAGATGAACGAAAACAAGTTTGAGGTGAGGGTGGT
GTGCTGGAGGAGCGAGGACGTTGTGGCGTGCGACGACTTCACCGGCCTTC
GTGATCTGTACTGCAAGCTTTGGATGGAGACAGACTCGACCAAGAAGAGG
GAAACCGACACGCACTGGCGCTGCAGAAACGGCAAGGGATCGTGGAACTA
TAGGGTAAAGTTCGACGTCGAGCTACCTCTCAAGAGTCCCGAGCACGGCC
GGCTTGCCTTCCAGGGATCGTGGAACTATAGGGTAAAGTTCGACGTCGAG
CTACCTCTCAAGAGTCCCGAGCACGGCCGGCTTGCCTTCCAGATGTGGGA
TCGTGACGTGCTAAGTCCAAACAACATCATCGCAGAGACGACCATTAACC
TCTACAAATGGTTCCTAAAGGTACGATTACTGCTGTGAATGTGGGATCGT
GACGTGCTAAGTCCAAACAACATCATCGCAGAGACGACCATTAACCTCTA
CAAATGGTTCCTAAAGGTACGATTACTGCTGTGA
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