mRNA_F-distichus_contig105442.473.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105442.473.1
Unique NamemRNA_F-distichus_contig105442.473.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig105442.473.1 vs. uniprot
Match: D7FLF1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF1_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 5.750e-30
Identity = 64/89 (71.91%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    4 GTRLGISRPSL-APRACRGSTVMRAEGGKVFVSGFLNSKERADQYVFDILQAQGKWEKIVVLSDSVSFAKKRLVSRKSRYSGLLDVLEF 267
            GT L   R  L A R       M A+GGKV V+GFLNSK+R DQ+VFDILQAQG+WEKIV  SDSVSFAKKRLVSRKSRYSGLLDVLEF
Sbjct:   35 GTGLNNERSGLPAARQRAADIAMSADGGKVLVTGFLNSKQRTDQFVFDILQAQGRWEKIVAFSDSVSFAKKRLVSRKSRYSGLLDVLEF 123          
BLAST of mRNA_F-distichus_contig105442.473.1 vs. uniprot
Match: A0A836C9Y5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Y5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.820e-22
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   61 TVMRAEGGKVFVSGFLNSKERADQYVFDILQAQGKWEKIVVLSDSVSFAKKRLVSRKSRYSGLLDVLEF 267
            ++M  +GGK+ VSGFL++KER DQ+VFD+L AQ  W KIV  S S +FAKKRL+SR SRYSGLLD+LEF
Sbjct:   53 SMMAGQGGKILVSGFLDAKERTDQFVFDVLHAQSSWSKIVAFSPSTAFAKKRLISRTSRYSGLLDILEF 121          
BLAST of mRNA_F-distichus_contig105442.473.1 vs. uniprot
Match: A0A7S2UU40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU40_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.140e-16
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   79 GGKVFVSGFLNSKERADQYVFDILQAQGKWEKIVVLSDSVSFAKKRLVSRKSRYSGLLDVLEF 267
            G  V VSGFL  K+  DQ+VFD+L  QG W+KIV  S  V+ AKKRL+SR+SRYSGL DVL+F
Sbjct:   82 GESVLVSGFLKDKDSTDQFVFDVLHDQGVWKKIVACSSDVASAKKRLISRQSRYSGLSDVLDF 144          
BLAST of mRNA_F-distichus_contig105442.473.1 vs. uniprot
Match: A0A7R9U5M8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5M8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.110e-14
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   79 GGKVFVSGFLNSKERADQYVFDILQAQGKWEKIVVLSDSVSFAKKRLVSRKSRYSGLLDVLEF 267
            GG + VSGFL+  ER DQ++FDIL A   W +I+ L+   + AKKRL+SR +RY+GLLDVL+F
Sbjct:   80 GGSILVSGFLDDAERDDQFIFDILHAPRSWNQIIALNADNASAKKRLISRSARYTGLLDVLKF 142          
BLAST of mRNA_F-distichus_contig105442.473.1 vs. uniprot
Match: A0A7S1UKI3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKI3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.540e-14
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   22 SRPSLAPRACRGSTVMRAEGGKVFVSGFLNSKERADQYVFDILQAQGKWEKIVVLSDSVSFAKKRLVSRKSRYSGLLDVLEF 267
            S+P+ +     G+TV    GG V VSGFL+   R DQ++FDIL     W KI+  +   + AKKRL+SR +RY+GLLDVL F
Sbjct:   34 SQPAESSAFLEGATV-DLSGGTVLVSGFLDDTARDDQFIFDILHTPKSWAKIIAFNADSASAKKRLISRSARYTGLLDVLNF 114          
BLAST of mRNA_F-distichus_contig105442.473.1 vs. uniprot
Match: A0A7S0FLQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FLQ0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.320e-13
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   82 GKVFVSGFLNSKERADQYVFDIL---QAQGKWEKIVVLSDSVSFAKKRLVSRKSRYSGLLDVLEF 267
            G+V VSG++ SKER DQ+VFD+L   +A   ++ IV   D   FAKKRL+SR +RY+GLLD LEF
Sbjct:   38 GRVLVSGYVQSKERTDQFVFDMLNHEEAAFNFDAIVAFVDDEKFAKKRLLSRHARYTGLLDKLEF 102          
BLAST of mRNA_F-distichus_contig105442.473.1 vs. uniprot
Match: A0A1E7F665_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F665_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.700e-12
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   82 GKVFVSGFLNSKERADQYVFDILQAQG---KWEKIVVLSDSVSFAKKRLVSRKSRYSGLLDVLEF 267
            G + VSG++N KER DQY+FD++  +    +++KIV   +   FAKKRL+SR SRYSGLLD L+F
Sbjct:   91 GTIMVSGYVNEKERTDQYIFDLINHEDSAFEFKKIVAFVNDAKFAKKRLLSRSSRYSGLLDKLDF 155          
BLAST of mRNA_F-distichus_contig105442.473.1 vs. uniprot
Match: A0A7S2W0X2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0X2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.310e-12
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   34 LAPRACRGSTVMRAEG--------GKVFVSGFLNSKERADQYVFDILQAQGKWEKIVVLSDSVSFAKKRLVSRKSRYSGLLDVLEF 267
            LAP + R + V  A          G + VSGF++S++R D + FD L   G +EKI+  S   +FAKKRL+ R +RY+GLLDVL+F
Sbjct:   38 LAPPSSRSALVRSAAPESGEATVKGSILVSGFISSQDRTDSFGFDALNKLGIFEKIIAYSTDSAFAKKRLIGRNARYTGLLDVLDF 123          
BLAST of mRNA_F-distichus_contig105442.473.1 vs. uniprot
Match: A0A7R9WJL5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJL5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.090e-11
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   82 GKVFVSGFLNSKERADQYVFDILQAQGK---WEKIVVLSDSVSFAKKRLVSRKSRYSGLLDVLEF 267
            G V VSG++ SKER DQ VFD L A+     + KIV   D VSFAKKRL+ R +RY+GLLD L+F
Sbjct:   90 GTVLVSGWVRSKERTDQEVFDFLNAEESAFGFSKIVAFVDDVSFAKKRLLGRHARYTGLLDKLDF 154          
BLAST of mRNA_F-distichus_contig105442.473.1 vs. uniprot
Match: A0A7S0CED9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CED9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.510e-11
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   82 GKVFVSGFLNSKERADQYVFDIL---QAQGKWEKIVVLSDSVSFAKKRLVSRKSRYSGLLDVLE 264
            G V VSG++NSKER+DQ VFD+L   ++  K+ KI+   D   FAKKRL+SR +RYSGLLD L+
Sbjct:  106 GTVLVSGWVNSKERSDQTVFDMLNDEESPFKFSKIIAFVDDEKFAKKRLLSRSARYSGLLDKLD 169          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105442.473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF1_ECTSI5.750e-3071.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9Y5_9STRA1.820e-2265.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UU40_9STRA5.140e-1661.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U5M8_9STRA2.110e-1455.56Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UKI3_9STRA9.540e-1447.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0FLQ0_9STRA4.320e-1355.38Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A1E7F665_9STRA1.700e-1252.31Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2W0X2_9STRA2.310e-1244.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9WJL5_9STRA1.090e-1156.92Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S0CED9_9STRA1.510e-1156.25Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105442contigF-distichus_contig105442:1..267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue3.8e-25
Seed eggNOG ortholog2880.D7FLF1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0Q3@1,2S841@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.9408603-CDS-F-distichus_contig105442:0..2671622928979.9408603-CDS-F-distichus_contig105442:0..267Fucus distichus monoicousCDSF-distichus_contig105442 1..267 -
1690885089.799482-CDS-F-distichus_contig105442:0..2671690885089.799482-CDS-F-distichus_contig105442:0..267Fucus distichus monoicousCDSF-distichus_contig105442 1..267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105442.473.1prot_F-distichus_contig105442.473.1Fucus distichus monoicouspolypeptideF-distichus_contig105442 1..267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105442.473.1

>prot_F-distichus_contig105442.473.1 ID=prot_F-distichus_contig105442.473.1|Name=mRNA_F-distichus_contig105442.473.1|organism=Fucus distichus monoicous|type=polypeptide|length=89bp
CGTRLGISRPSLAPRACRGSTVMRAEGGKVFVSGFLNSKERADQYVFDIL
QAQGKWEKIVVLSDSVSFAKKRLVSRKSRYSGLLDVLEF
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mRNA from alignment at F-distichus_contig105442:1..267-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105442.473.1 ID=mRNA_F-distichus_contig105442.473.1|Name=mRNA_F-distichus_contig105442.473.1|organism=Fucus distichus monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at F-distichus_contig105442:1..267- (Fucus distichus monoicous)
TGCGGTACAAGACTGGGCATCTCGCGACCAAGCTTAGCACCTCGCGCATG TAGAGGCTCGACTGTCATGAGGGCCGAGGGCGGAAAGGTGTTCGTTTCGG GCTTCTTGAACTCCAAGGAGCGCGCCGATCAGTATGTTTTTGATATTTTG CAGGCGCAGGGTAAATGGGAAAAGATTGTGGTGCTCTCCGACAGCGTAAG CTTTGCGAAGAAACGGCTGGTGAGCCGGAAGTCCCGCTACAGCGGGTTGT TGGACGTGCTGGAGTTC
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Coding sequence (CDS) from alignment at F-distichus_contig105442:1..267-

>mRNA_F-distichus_contig105442.473.1 ID=mRNA_F-distichus_contig105442.473.1|Name=mRNA_F-distichus_contig105442.473.1|organism=Fucus distichus monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at F-distichus_contig105442:1..267- (Fucus distichus monoicous)
TGCGGTACAAGACTGGGCATCTCGCGACCAAGCTTAGCACCTCGCGCATG
TAGAGGCTCGACTGTCATGAGGGCCGAGGGCGGAAAGGTGTTCGTTTCGG
GCTTCTTGAACTCCAAGGAGCGCGCCGATCAGTATGTTTTTGATATTTTG
CAGGCGCAGGGTAAATGGGAAAAGATTGTGGTGCTCTCCGACAGCGTAAG
CTTTGCGAAGAAACGGCTGGTGAGCCGGAAGTCCCGCTACAGCGGGTTGT
TGGACGTGCTGGAGTTCTGCGGTACAAGACTGGGCATCTCGCGACCAAGC
TTAGCACCTCGCGCATGTAGAGGCTCGACTGTCATGAGGGCCGAGGGCGG
AAAGGTGTTCGTTTCGGGCTTCTTGAACTCCAAGGAGCGCGCCGATCAGT
ATGTTTTTGATATTTTGCAGGCGCAGGGTAAATGGGAAAAGATTGTGGTG
CTCTCCGACAGCGTAAGCTTTGCGAAGAAACGGCTGGTGAGCCGGAAGTC
CCGCTACAGCGGGTTGTTGGACGTGCTGGAGTTC
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