mRNA_F-distichus_contig105428.470.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105428.470.1
Unique NamemRNA_F-distichus_contig105428.470.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105428.470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105428contigF-distichus_contig105428:1080..1457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.777261-CDS-F-distichus_contig105428:1079..14571622928979.777261-CDS-F-distichus_contig105428:1079..1457Fucus distichus monoicousCDSF-distichus_contig105428 1080..1457 +
1690885089.7207892-CDS-F-distichus_contig105428:1079..14571690885089.7207892-CDS-F-distichus_contig105428:1079..1457Fucus distichus monoicousCDSF-distichus_contig105428 1080..1457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105428.470.1prot_F-distichus_contig105428.470.1Fucus distichus monoicouspolypeptideF-distichus_contig105428 1080..1457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105428.470.1

>prot_F-distichus_contig105428.470.1 ID=prot_F-distichus_contig105428.470.1|Name=mRNA_F-distichus_contig105428.470.1|organism=Fucus distichus monoicous|type=polypeptide|length=126bp
IKTSSAITRAELERTYNHVMVDKSLRVWGSLTKAVEREDDIMNMVMEIGS
PSLAWQALKKMVVKTTDDAYDRAKREFENLEMGDHETVSEYFARLNIILM
KLQRYNVTTPPREIKRIVMRSLTPRF
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mRNA from alignment at F-distichus_contig105428:1080..1457+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105428.470.1 ID=mRNA_F-distichus_contig105428.470.1|Name=mRNA_F-distichus_contig105428.470.1|organism=Fucus distichus monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at F-distichus_contig105428:1080..1457+ (Fucus distichus monoicous)
ATAAAAACCTCGTCAGCGATTACACGAGCAGAGCTCGAGCGAACATACAA
TCATGTAATGGTAGACAAGTCGCTTAGAGTCTGGGGGTCTCTCACAAAAG
CGGTAGAGAGAGAAGATGATATCATGAATATGGTAATGGAGATCGGTTCA
CCATCACTTGCATGGCAGGCGTTAAAAAAGATGGTAGTCAAAACAACAGA
CGACGCATACGATCGGGCGAAACGAGAATTCGAAAATCTTGAGATGGGAG
ATCACGAGACCGTATCAGAATACTTTGCACGCCTAAACATTATTCTAATG
AAGCTTCAAAGGTATAACGTAACAACTCCCCCACGGGAAATTAAGCGCAT
TGTAATGAGGAGCCTGACCCCCCGTTTT
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Coding sequence (CDS) from alignment at F-distichus_contig105428:1080..1457+

>mRNA_F-distichus_contig105428.470.1 ID=mRNA_F-distichus_contig105428.470.1|Name=mRNA_F-distichus_contig105428.470.1|organism=Fucus distichus monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at F-distichus_contig105428:1080..1457+ (Fucus distichus monoicous)
ATAAAAACCTCGTCAGCGATTACACGAGCAGAGCTCGAGCGAACATACAA
TCATGTAATGGTAGACAAGTCGCTTAGAGTCTGGGGGTCTCTCACAAAAG
CGGTAGAGAGAGAAGATGATATCATGAATATGGTAATGGAGATCGGTTCA
CCATCACTTGCATGGCAGGCGTTAAAAAAGATGGTAGTCAAAACAACAGA
CGACGCATACGATCGGGCGAAACGAGAATTCGAAAATCTTGAGATGGGAG
ATCACGAGACCGTATCAGAATACTTTGCACGCCTAAACATTATTCTAATG
AAGCTTCAAAGGTATAACGTAACAACTCCCCCACGGGAAATTAAGCGCAT
TGTAATGAGGAGCCTGACCCCCCGTTTTATAAAAACCTCGTCAGCGATTA
CACGAGCAGAGCTCGAGCGAACATACAATCATGTAATGGTAGACAAGTCG
CTTAGAGTCTGGGGGTCTCTCACAAAAGCGGTAGAGAGAGAAGATGATAT
CATGAATATGGTAATGGAGATCGGTTCACCATCACTTGCATGGCAGGCGT
TAAAAAAGATGGTAGTCAAAACAACAGACGACGCATACGATCGGGCGAAA
CGAGAATTCGAAAATCTTGAGATGGGAGATCACGAGACCGTATCAGAATA
CTTTGCACGCCTAAACATTATTCTAATGAAGCTTCAAAGGTATAACGTAA
CAACTCCCCCACGGGAAATTAAGCGCATTGTAATGAGGAGCCTGACCCCC
CGTTTT
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