mRNA_F-distichus_contig105427.469.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105427.469.1
Unique NamemRNA_F-distichus_contig105427.469.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105427.469.1 vs. uniprot
Match: D8LS34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS34_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.250e-31
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    4 GECVPLRVFLKPYALTPTYRSTSKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA 174
            GECVPLRVFLKPYALTPTYR T+KFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA
Sbjct:  242 GECVPLRVFLKPYALTPTYRGTNKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA 298
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BLAST of mRNA_F-distichus_contig105427.469.1 vs. uniprot
Match: A0A836CB39_9STRA (Vacuolar protein sorting-associated protein 26-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB39_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.060e-23
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    4 GECVPLRVFLKPYALTPTYRS-TSKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA 174
            GECVPLR+FLKPY LTPTY+S  +KF+V+Y+LNLVLVDEEDRRYFKQQEV LWR+ V 
Sbjct:  242 GECVPLRLFLKPYDLTPTYKSINNKFSVRYYLNLVLVDEEDRRYFKQQEVVLWRRDVG 299
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BLAST of mRNA_F-distichus_contig105427.469.1 vs. uniprot
Match: H3H1I2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1I2_PHYRM)

HSP 1 Score: 96.7 bits (239), Expect = 8.500e-23
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    4 GECVPLRVFLKPYALTPTYRST-SKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA 174
            GE VP+R++L PYALTPTYR+  S+F+VKYFLNLVLVDEEDRRYFKQQE+TLWRK V 
Sbjct:  242 GESVPVRLYLSPYALTPTYRNVQSRFSVKYFLNLVLVDEEDRRYFKQQEITLWRKNVG 299
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BLAST of mRNA_F-distichus_contig105427.469.1 vs. uniprot
Match: D0NHV5_PHYIT (Vacuolar protein sorting-associated protein 26B-A n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NHV5_PHYIT)

HSP 1 Score: 93.2 bits (230), Expect = 1.260e-22
Identity = 43/55 (78.18%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    4 GECVPLRVFLKPYALTPTYRST-SKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRK 165
            GE VP+R++L PYALTPTYR+  S+F+VKYFLNLVLVDEEDRRYFKQQE++LWRK
Sbjct:  110 GESVPVRLYLAPYALTPTYRNVQSRFSVKYFLNLVLVDEEDRRYFKQQEISLWRK 164
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BLAST of mRNA_F-distichus_contig105427.469.1 vs. uniprot
Match: A0A6A3WT01_9STRA (Vacuolar protein sorting-associated protein 26 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WT01_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.330e-22
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    4 GECVPLRVFLKPYALTPTYRST-SKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA 174
            GE VP+R++L PYALTPTYR+  S+F+VKYFLNLVLVDEEDRRYFKQQE+TLWRK + 
Sbjct:  249 GESVPVRLYLSPYALTPTYRNVQSRFSVKYFLNLVLVDEEDRRYFKQQEITLWRKNIG 306
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BLAST of mRNA_F-distichus_contig105427.469.1 vs. uniprot
Match: W2R135_PHYPN (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R135_PHYPN)

HSP 1 Score: 94.7 bits (234), Expect = 1.730e-22
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    4 GECVPLRVFLKPYALTPTYRST-SKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRK 165
            GE VP+R++L PYALTPTYR+  S+F+VKYFLNLVLVDEEDRRYFKQQE+TLWRK
Sbjct:  186 GESVPVRLYLAPYALTPTYRNVQSRFSVKYFLNLVLVDEEDRRYFKQQEITLWRK 240
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BLAST of mRNA_F-distichus_contig105427.469.1 vs. uniprot
Match: A0A225W3N3_9STRA (Retroelement (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=A0A225W3N3_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.810e-22
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    4 GECVPLRVFLKPYALTPTYRST-SKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA 174
            GE VP+R++L PY LTPTYR+  S+F+VKYFLNLVLVDEEDRRYFKQQE+TLWRK + 
Sbjct:  210 GESVPVRLYLSPYPLTPTYRNVQSRFSVKYFLNLVLVDEEDRRYFKQQEITLWRKTIG 267
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BLAST of mRNA_F-distichus_contig105427.469.1 vs. uniprot
Match: W2KNK0_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2KNK0_PHYPR)

HSP 1 Score: 94.7 bits (234), Expect = 4.950e-22
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    4 GECVPLRVFLKPYALTPTYRST-SKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRK 165
            GE VP+R++L PYALTPTYR+  S+F+VKYFLNLVLVDEEDRRYFKQQE+TLWRK
Sbjct:  247 GESVPVRLYLAPYALTPTYRNVQSRFSVKYFLNLVLVDEEDRRYFKQQEITLWRK 301
[Close]
BLAST of mRNA_F-distichus_contig105427.469.1 vs. uniprot
Match: A0A662XK01_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XK01_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.150e-21
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    4 GECVPLRVFLKPYALTPTYRST-SKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA 174
            GE VP+R++L PYALTPTYR+  S+F+VKYFLNLVLVDEEDRRYFKQQE+ LWRK V 
Sbjct:  259 GESVPVRLYLAPYALTPTYRNVQSRFSVKYFLNLVLVDEEDRRYFKQQEIILWRKAVG 316
[Close]
BLAST of mRNA_F-distichus_contig105427.469.1 vs. uniprot
Match: A0A5D6XH37_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH37_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.320e-21
Identity = 41/58 (70.69%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    4 GECVPLRVFLKPYALTPTYRST-SKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA 174
            GE +P+R++L PYALTPTYR+  +KF++KYFLNLVLVDEEDRRYFKQQE+T+WRK + 
Sbjct:  245 GESIPVRLYLAPYALTPTYRNVQNKFSIKYFLNLVLVDEEDRRYFKQQEITIWRKALG 302
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105427.469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS34_ECTSI2.250e-3196.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CB39_9STRA6.060e-2377.59Vacuolar protein sorting-associated protein 26-dom... [more]
H3H1I2_PHYRM8.500e-2377.59Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D0NHV5_PHYIT1.260e-2278.18Vacuolar protein sorting-associated protein 26B-A ... [more]
A0A6A3WT01_9STRA1.330e-2275.86Vacuolar protein sorting-associated protein 26 n=3... [more]
W2R135_PHYPN1.730e-2280.00Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
A0A225W3N3_9STRA3.810e-2274.14Retroelement (Fragment) n=3 Tax=Phytophthora TaxID... [more]
W2KNK0_PHYPR4.950e-2280.00Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A662XK01_9STRA1.150e-2175.86Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A5D6XH37_9STRA1.320e-2170.69Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105427contigF-distichus_contig105427:882..1934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog2880.D8LS34
Preferred nameVPS26B
KEGG rclassRC00055,RC00523
KEGG koko:K01876,ko:K18466
KEGG ReactionR05577
KEGG Pathwayko00970,ko04144,map00970,map04144
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0008104,GO:0008150,GO:0008565,GO:0009894,GO:0009966,GO:0009987,GO:0010008,GO:0010033,GO:0010506,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016055,GO:0016192,GO:0016197,GO:0016241,GO:0016482,GO:0016787,GO:0019222,GO:0023051,GO:0023052,GO:0030111,GO:0030139,GO:0030904,GO:0030906,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034097,GO:0034341,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045087,GO:0045184,GO:0045185,GO:0045335,GO:0046907,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051716,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071702,GO:0071705,GO:0097422,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0098876,GO:0198738,GO:1905114,GO:1990126
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsKOG3063@1,KOG3063@2759
EC6.1.1.12
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131
Exons2
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.7024257-CDS-F-distichus_contig105427:881..10091622928979.7024257-CDS-F-distichus_contig105427:881..1009Fucus distichus monoicousCDSF-distichus_contig105427 882..1009 +
1690885089.682801-CDS-F-distichus_contig105427:881..10091690885089.682801-CDS-F-distichus_contig105427:881..1009Fucus distichus monoicousCDSF-distichus_contig105427 882..1009 +
1622928979.7317088-CDS-F-distichus_contig105427:1885..19341622928979.7317088-CDS-F-distichus_contig105427:1885..1934Fucus distichus monoicousCDSF-distichus_contig105427 1886..1934 +
1690885089.7052786-CDS-F-distichus_contig105427:1885..19341690885089.7052786-CDS-F-distichus_contig105427:1885..1934Fucus distichus monoicousCDSF-distichus_contig105427 1886..1934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105427.469.1prot_F-distichus_contig105427.469.1Fucus distichus monoicouspolypeptideF-distichus_contig105427 882..1934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105427.469.1

>prot_F-distichus_contig105427.469.1 ID=prot_F-distichus_contig105427.469.1|Name=mRNA_F-distichus_contig105427.469.1|organism=Fucus distichus monoicous|type=polypeptide|length=59bp
AGECVPLRVFLKPYALTPTYRSTSKFTVKYFLNLVLVDEEDRRYFKQQEV
TLWRKYVA*
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mRNA from alignment at F-distichus_contig105427:882..1934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105427.469.1 ID=mRNA_F-distichus_contig105427.469.1|Name=mRNA_F-distichus_contig105427.469.1|organism=Fucus distichus monoicous|type=mRNA|length=1053bp|location=Sequence derived from alignment at F-distichus_contig105427:882..1934+ (Fucus distichus monoicous)
GCAGGGGAGTGCGTGCCACTCCGGGTGTTCCTGAAGCCTTATGCGCTGAC
TCCCACGTATCGATCAACGAGCAAGTTCACGGTCAAGTACTTCCTCAATC
TGGTTCTGGTGGACGAGGAGGATCGAAGGTGTGGTAACAAGGAAATAACA
AGGAAAGGAAAGGAAGGGTAGTAACAAGAAAATGTAAGAGGGGGTTCGCT
GGTGCAACCTCGTAGTTTCCGACCTATCCAATGCTGTGAGGGGTTTTTCG
AAAATACAGTTGAAAATACTACTGTTGTACTCAAGATCGAAGTACTGTAC
TGCCTTTTCCTCCGCCTTTTTAACTCGGTATCTGTGATCTAGAAATGGAA
ATACATGTTCAGAGCCTACAGCCGGTCACCCTATTAATGGTAGTTCAGTT
GGTAACCTCGAAACCTTCTATTAATGATTAATGACGTTGGGACGTGAGTT
CGAATTTGGGTGTCGTCACACGAATCCAACAAGTGTAGAACTATTAAATC
GTCAGTGTCGTTAGTACACACAATTCGACTTCACGGTCGACGAGGGATAT
GAACGGCAGAACCCTTCTCGCGAGAAAAATTAAGGCAAGCACCGCAGAAA
GAAGCTGTGCGACCTTCCTCCTGTGCGACCCCGGCTGGTACGCCCACAAA
CCTAACGTCCAGAATAAATGGGATGACAACACACACACACACACAGTATT
TATTTTGGTCTTGACATCGTATTAATAGTCGTTGAGGGTTGGGTGGAGGG
TGTTCTTGCGCCATCGGCGGCAAAATGAGGCACCTAGGGTAAAATGACTC
GTTCACCACATGAAACGTCATCACTTCGCCCCCCAGCTTTACTATTATTC
TATAGTATACTGCACTGTACACCTCTCCCCCAATCCCCTTGACGCACACC
TTTAAGATGATATATGTCTGCCTTCTCCTGCCTGCCTGTCTGTTCTGATG
GCGGCACAACAACACAACTGTTGGAAACCGAAAATTAAATTCTGCGCGGG
GAAGGTATTTCAAGCAACAGGAGGTGACTCTCTGGCGAAAGTACGTTGCG
TAA
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Coding sequence (CDS) from alignment at F-distichus_contig105427:882..1934+

>mRNA_F-distichus_contig105427.469.1 ID=mRNA_F-distichus_contig105427.469.1|Name=mRNA_F-distichus_contig105427.469.1|organism=Fucus distichus monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at F-distichus_contig105427:882..1934+ (Fucus distichus monoicous)
GCAGGGGAGTGCGTGCCACTCCGGGTGTTCCTGAAGCCTTATGCGCTGAC
TCCCACGTATCGATCAACGAGCAAGTTCACGGTCAAGTACTTCCTCAATC
TGGTTCTGGTGGACGAGGAGGATCGAAGGCAGGGGAGTGCGTGCCACTCC
GGGTGTTCCTGAAGCCTTATGCGCTGACTCCCACGTATCGATCAACGAGC
AAGTTCACGGTCAAGTACTTCCTCAATCTGGTTCTGGTGGACGAGGAGGA
TCGAAGGTATTTCAAGCAACAGGAGGTGACTCTCTGGCGAAAGTACGTTG
CGTAAGTATTTCAAGCAACAGGAGGTGACTCTCTGGCGAAAGTACGTTGC
GTAA
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