mRNA_F-distichus_contig105405.467.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105405.467.1
Unique NamemRNA_F-distichus_contig105405.467.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105405.467.1 vs. uniprot
Match: D8LKD9_ECTSI (MABP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD9_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 4.090e-20
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:   25 IVDVIVAHGSDAIPQGYTKILKSSGGRRADLNSGSMGQYVYLAVRSVYP---------------GRVVGITAVVALALIFPDRGE 234
            IVDVIV HGSD +  GY+K+ +SSGG+RADLN+G+ GQYVYLAV+   P               GR+VG+ AVVALALIFPDRGE
Sbjct:  274 IVDVIVVHGSDPVLPGYSKLERSSGGKRADLNTGARGQYVYLAVKRDTPLVDQAGGDDVSHPGGGRMVGVPAVVALALIFPDRGE 358
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BLAST of mRNA_F-distichus_contig105405.467.1 vs. uniprot
Match: I2CQ92_NANGC (C-myc promoter-binding protein irlb (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ92_NANGC)

HSP 1 Score: 69.7 bits (169), Expect = 1.660e-13
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 EGAATISMIVDVIVAHGSDAIPQGYTKILKSSGGRRADLNSGSMGQYVYLAVRSVYPGRVVGITAVVALALIFPDRGE 234
            E A+  + +V++    GSDA+P+G+ ++  +  GR+ADLN+G+ G Y+YLAVR   PGR      VVALA+IFPDR E
Sbjct:   51 ESASPGAPLVEIQAVFGSDAVPEGFKRVSNTPCGRKADLNAGAGGHYIYLAVRKDNPGR--RRPPVVALAVIFPDRQE 126
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BLAST of mRNA_F-distichus_contig105405.467.1 vs. uniprot
Match: A0A6H5KVS2_9PHAE (MABP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 8.960e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   25 IVDVIVAHGSDAIPQGYTKILKSSGGRRADLNSGSMGQYVYLAVRSV 165
            IVDVIV HGSD +P GY+K+ +SSGGRRADLN+G+ GQYVYLAV  V
Sbjct:  305 IVDVIVVHGSDPVPPGYSKLERSSGGRRADLNTGARGQYVYLAVSIV 351
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BLAST of mRNA_F-distichus_contig105405.467.1 vs. uniprot
Match: W7U6C9_9STRA (Brefeldin a-inhibited guanine nucleotide-exchange n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.030e-12
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 EGAATISMIVDVIVAHGSDAIPQGYTKILKSSGGRRADLNSGSMGQYVYLAVRSVYPGRVVGITAVVALALIFPDRGE 234
            E A+  + +V++    GSDA+P+G+ ++  +  GR+ADLN+G+ G Y+YLAVR   PGR      VVALA+IFPDR E
Sbjct:  203 ESASPGAPLVEIQAVFGSDAVPEGFKRVSNTPCGRKADLNAGAGGHYIYLAVRKDNPGR--RRPPVVALAVIFPDRQE 278
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BLAST of mRNA_F-distichus_contig105405.467.1 vs. uniprot
Match: A0A835ZFI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.340e-10
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   25 IVDVIVAHGSDAIPQGYTKILKSSGGRRADLNSGSMGQYVYLAVRSVYPGRVVGITAVVALALIFPDRGE 234
            IV + + HG+D +P+GY K+  +  GR+ADLN+G+ GQY+YL V+     R    T +  +A++FPDRGE
Sbjct:  464 IVAITLVHGNDPVPEGYDKVGLTIAGRKADLNAGAGGQYLYLCVQR---DRSWPRTCITGIAVVFPDRGE 530
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BLAST of mRNA_F-distichus_contig105405.467.1 vs. uniprot
Match: A0A5D6XHY6_9STRA (MABP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHY6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.300e-6
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:   25 IVDVIVAHGSDAIPQGYTKILKSSGGRRADLNSGSMGQYVYLAVRSVYPGRVVGITAVVALALIFPDRGE 234
            I D+ V    D +P G+TK+ +SS G RADLN G  G ++YL  R     +  G   +  + +IFP+RGE
Sbjct:  192 ITDLAVIFTGDTLPDGFTKLERSSSGLRADLNKGGRGVFMYLCQRR---DQFAGKLPISEIIVIFPERGE 258
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BLAST of mRNA_F-distichus_contig105405.467.1 vs. uniprot
Match: A0A482RTL5_9ARCH (Multivesicular body subunit 12 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTL5_9ARCH)

HSP 1 Score: 51.2 bits (121), Expect = 1.170e-5
Identity = 26/70 (37.14%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:   25 IVDVIVAHGSDAIPQGYTKILKSSGGRRADLNSGSMGQYVYLAVRSVYPGRVVGITAVVALALIFPDRGE 234
            I DV +    +A+P G+ ++LK+   ++A+LNSGS G  +YL ++    G+   I   V   +IFPDR E
Sbjct:  144 ICDVCIIQYGEAVPDGFYRLLKTPSNKKANLNSGSGGNPIYLCLKKDLSGKAAPI---VNFIVIFPDRSE 210
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105405.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LKD9_ECTSI4.090e-2058.82MABP domain-containing protein n=1 Tax=Ectocarpus ... [more]
I2CQ92_NANGC1.660e-1347.44C-myc promoter-binding protein irlb (Fragment) n=1... [more]
A0A6H5KVS2_9PHAE8.960e-1372.34MABP domain-containing protein n=1 Tax=Ectocarpus ... [more]
W7U6C9_9STRA4.030e-1247.44Brefeldin a-inhibited guanine nucleotide-exchange ... [more]
A0A835ZFI0_9STRA2.340e-1044.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6XHY6_9STRA1.300e-640.00MABP domain-containing protein n=1 Tax=Pythium bra... [more]
A0A482RTL5_9ARCH1.170e-537.14Multivesicular body subunit 12 n=1 Tax=archaeon Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105405contigF-distichus_contig105405:86..710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105405.467.1prot_F-distichus_contig105405.467.1Fucus distichus monoicouspolypeptideF-distichus_contig105405 86..689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.579934-CDS-F-distichus_contig105405:85..1591622928979.579934-CDS-F-distichus_contig105405:85..159Fucus distichus monoicousCDSF-distichus_contig105405 86..159 -
1690885089.4575982-CDS-F-distichus_contig105405:85..1591690885089.4575982-CDS-F-distichus_contig105405:85..159Fucus distichus monoicousCDSF-distichus_contig105405 86..159 -
1622928979.5914621-CDS-F-distichus_contig105405:550..6891622928979.5914621-CDS-F-distichus_contig105405:550..689Fucus distichus monoicousCDSF-distichus_contig105405 551..689 -
1690885089.5240626-CDS-F-distichus_contig105405:550..6891690885089.5240626-CDS-F-distichus_contig105405:550..689Fucus distichus monoicousCDSF-distichus_contig105405 551..689 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.601647-UTR-F-distichus_contig105405:689..7101622928979.601647-UTR-F-distichus_contig105405:689..710Fucus distichus monoicousUTRF-distichus_contig105405 690..710 -
1690885089.5329232-UTR-F-distichus_contig105405:689..7101690885089.5329232-UTR-F-distichus_contig105405:689..710Fucus distichus monoicousUTRF-distichus_contig105405 690..710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105405.467.1

>prot_F-distichus_contig105405.467.1 ID=prot_F-distichus_contig105405.467.1|Name=mRNA_F-distichus_contig105405.467.1|organism=Fucus distichus monoicous|type=polypeptide|length=71bp
MIVDVIVAHGSDAIPQGYTKILKSSGGRRADLNSGSMGQYVYLAVRSVYP
GRVVGITAVVALALIFPDRGE
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mRNA from alignment at F-distichus_contig105405:86..710-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105405.467.1 ID=mRNA_F-distichus_contig105405.467.1|Name=mRNA_F-distichus_contig105405.467.1|organism=Fucus distichus monoicous|type=mRNA|length=625bp|location=Sequence derived from alignment at F-distichus_contig105405:86..710- (Fucus distichus monoicous)
GAGGGAGCAGCGACGATCAGCATGATCGTGGACGTGATCGTGGCGCACGG
GTCGGACGCGATTCCCCAAGGATACACGAAGATTCTCAAGTCTTCCGGGG
GGAGGAGGGCGGACCTCAACAGCGGGTCGATGGGGCAGTACGTGTACCTC
GCGGTGAGGAGTGGGGTAGGGGATAAGAGGGGATGTGACAAATATGTCCC
CCGTGGGAAGTCTCGAATCATACCCTCCCGGAGATGATATCATCTGCATA
TCCTCTCGTTATGATGTTTCATCTATTATTTTCTTACGCACTCAATGCCA
GCTTTATCTTACGTAGAGTTCGTTTTCTTGCTGGGATTTTAGAGGTTATC
CCCGTTAGGGGAAGTTGTGTTATTAGAATTCGAGGGCAGATTTGCGTCAT
CCTGTAGCGTGAGAGGTTGGCGAATTGTATTCTTCTGAGTCGACCTGCGT
CCGTCGTCAAACCTCTGGTCGCCTCCAGGTAAAGCGGGAGCCAGGCGAAT
CTTCTACTGCCAGCAGGGTGCGGAAATCGGGAGTTCCTAATGCAGCAGGA
GGCGTTTATCCGGGCAGGGTCGTTGGGATCACGGCTGTGGTGGCGCTGGC
ATTGATATTTCCGGATCGAGGCGAG
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Coding sequence (CDS) from alignment at F-distichus_contig105405:86..710-

>mRNA_F-distichus_contig105405.467.1 ID=mRNA_F-distichus_contig105405.467.1|Name=mRNA_F-distichus_contig105405.467.1|organism=Fucus distichus monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at F-distichus_contig105405:86..710- (Fucus distichus monoicous)
ATGATCGTGGACGTGATCGTGGCGCACGGGTCGGACGCGATTCCCCAAGG
ATACACGAAGATTCTCAAGTCTTCCGGGGGGAGGAGGGCGGACCTCAACA
GCGGGTCGATGGGGCAGTACGTGTACCTCGCGGTGAGGAATGATCGTGGA
CGTGATCGTGGCGCACGGGTCGGACGCGATTCCCCAAGGATACACGAAGA
TTCTCAAGTCTTCCGGGGGGAGGAGGGCGGACCTCAACAGCGGGTCGATG
GGGCAGTACGTGTACCTCGCGGTGAGGAGCGTTTATCCGGGCAGGGTCGT
TGGGATCACGGCTGTGGTGGCGCTGGCATTGATATTTCCGGATCGAGGCG
AGGCGTTTATCCGGGCAGGGTCGTTGGGATCACGGCTGTGGTGGCGCTGG
CATTGATATTTCCGGATCGAGGCGAG
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