mRNA_F-distichus_contig105389.465.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105389.465.1
Unique NamemRNA_F-distichus_contig105389.465.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 6.700e-35
Identity = 77/170 (45.29%), Postives = 106/170 (62.35%), Query Frame = 1
Query:    1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE---ETPEGQ---KAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
            L FGTFNV T A  G + IGH + T ++ C+A GCDVIGLQET+R+G   I+  G  + +SG  +  K ++G HG G A+KE I +   E+G T+ECIS RL+K R+ I ++  VTFV  YAPTE    T  G    K  +  AL+  +  V +R+++ VL  ANARTG+
Sbjct:    9 LSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGR 178          
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.950e-34
Identity = 78/170 (45.88%), Postives = 108/170 (63.53%), Query Frame = 1
Query:    1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
            L FGTFNVRT A  G + IGH + T ++ C+A GCDVIGLQET+R G   I+  G  + +SG  +  K ++G HG G A+KE + +   E+G T+ECIS RL+K R+ I ++  VTF+  YAPTE   T EG     K  +  AL+  +  V +R+++ VL DANARTG+
Sbjct:  175 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 344          
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.000e-33
Identity = 78/170 (45.88%), Postives = 107/170 (62.94%), Query Frame = 1
Query:    1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
            L FGTFNVRT A  G + IGH + T ++ C+A GCDVIGLQET+R G   I+  G  + +SG  +  K ++G HG G A+KE + +   E+G T+ECIS RL+K R+ I ++  VTFV  YAPTE   T  G     K  +  AL+  +  V +R+++ VL DANARTG+
Sbjct:   86 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 255          
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.360e-33
Identity = 74/170 (43.53%), Postives = 105/170 (61.76%), Query Frame = 1
Query:    1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
            L FGTFNVRT A  G + IGH + T ++ C+A GCDVIGLQET+R+G   I+  G  + +SG  +  K ++G HG G A+KE + +   E+G  +ECI  RL+K R+ I ++  +TFV  YAPTE   T  G     K  +  AL+  +  V + +++ VL DANARTG+
Sbjct:  148 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGR 317          
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 7.250e-33
Identity = 77/170 (45.29%), Postives = 107/170 (62.94%), Query Frame = 1
Query:    1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
            L FGTFNV T A  G + IGH + T ++ C+A GCDVIGLQET+R+G   I+  G  + +SG  +  K ++G HG G A+KE + +   E+G T+ECIS RL+K R+ I ++  VTFV  YAPTE   T  G     K  +  AL+  +  V +R+++ VL DANARTG+
Sbjct:  657 LSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 826          
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.260e-32
Identity = 75/170 (44.12%), Postives = 104/170 (61.18%), Query Frame = 1
Query:    1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
            L FGTFNVRT A  G + IGH + T ++ C+A GCDVIGLQET+R G   I+  G  + +SG  +  K ++G HG G  +KE + +   E+G T+ECI  RL+K R+ I ++  V FV  YAPTE   T  G     K  +  AL+  +  V +R+++ VL DANARTG+
Sbjct:   81 LSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 250          
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.820e-32
Identity = 74/170 (43.53%), Postives = 104/170 (61.18%), Query Frame = 1
Query:    1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
            L FGTFN+RT      + IGH + T ++ C+A GCDV+GLQE +RDG   I   G  + +SG  +  K ++G HG G A+KE + +   E+G T+ECIS RL+K R+ I ++  VTFV  YAPTE   T  G     K  +  AL+  +  V +R+++ VL DANARTG+
Sbjct:   25 LSFGTFNLRTLHYSDRNPIGHNVMTVMQICSATGCDVVGLQENRRDGQGSIPHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTGR 194          
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 4.520e-32
Identity = 76/168 (45.24%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANART 480
            L FG FNVRT A  G   IGH + T ++ C+A GCDVIGLQET+R+G   I+  G  + +SG  +  K ++G HG G A+KE + +   E+G T+ECIS RL+K R+ I ++  VTFV  YAPTE   T  G     K  +  AL+  +  V +R+++ VL DANART
Sbjct:   59 LSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANART 226          
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 4.720e-32
Identity = 76/170 (44.71%), Postives = 107/170 (62.94%), Query Frame = 1
Query:    1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEGQ----KAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
            L FGTFNVRT A  G + IGH + T ++ C+A GCDVIGLQET+R+G   I+  G  + +SG  +  K ++G HG G A+KE + +   E+G T+EC S RL+K R+ I ++  VTFV  YA TE   T  G+    K  +  AL+  +  V +R+++ VL DANARTG+
Sbjct:  820 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEVMWESVGEEGRTVECSSPRLMKVRLQIGRTCRVTFVVGYALTETVRTTAGRDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 989          
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.090e-31
Identity = 76/166 (45.78%), Postives = 102/166 (61.45%), Query Frame = 1
Query:    7 FGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAP-TEETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTG 483
            FGTFNVRT A  G + IGH + T ++ C+  GCDVIGLQET+R+G   I+  G  V +SG  +  K ++G HG G A+KE +   A E+G T+ECIS RL+K R+ I ++  VTFV  YAP T  T  G     K     AL+  +  V +R+++ VL DANA TG
Sbjct:  125 FGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSLWTALDAAIREVHSRDHLVVLMDANAHTG 290          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZE6_9PHAE6.700e-3545.29Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K3Q1_9PHAE2.950e-3445.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMB4_9PHAE1.000e-3345.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L660_9PHAE4.360e-3343.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE7.250e-3345.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV75_9PHAE2.260e-3244.12Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K6P8_9PHAE2.820e-3243.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE4.520e-3245.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0W6_9PHAE4.720e-3244.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDU4_9PHAE2.090e-3145.78Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105389contigF-distichus_contig105389:945..1430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score65.9
Seed ortholog evalue2e-08
Seed eggNOG ortholog7029.ACYPI35610-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3CYKV@33213,3EEB6@33342,3SQFK@50557,420TT@6656,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size483
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.3946314-UTR-F-distichus_contig105389:944..9471622928979.3946314-UTR-F-distichus_contig105389:944..947Fucus distichus monoicousUTRF-distichus_contig105389 945..947 +
1690885089.344616-UTR-F-distichus_contig105389:944..9471690885089.344616-UTR-F-distichus_contig105389:944..947Fucus distichus monoicousUTRF-distichus_contig105389 945..947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.4095342-CDS-F-distichus_contig105389:947..14301622928979.4095342-CDS-F-distichus_contig105389:947..1430Fucus distichus monoicousCDSF-distichus_contig105389 948..1430 +
1690885089.4198246-CDS-F-distichus_contig105389:947..14301690885089.4198246-CDS-F-distichus_contig105389:947..1430Fucus distichus monoicousCDSF-distichus_contig105389 948..1430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105389.465.1prot_F-distichus_contig105389.465.1Fucus distichus monoicouspolypeptideF-distichus_contig105389 948..1430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105389.465.1

>prot_F-distichus_contig105389.465.1 ID=prot_F-distichus_contig105389.465.1|Name=mRNA_F-distichus_contig105389.465.1|organism=Fucus distichus monoicous|type=polypeptide|length=161bp
MFGTFNVRTAAVDGVSGIGHIETQLRTCAAKGCDVIGLQETKRDGTSEIS
ASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARL
LKARISIKSNFVTFVEAYAPTEETPEGQKAKYMAALNYTVASVPAREYVF
VLTDANARTGK
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mRNA from alignment at F-distichus_contig105389:945..1430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105389.465.1 ID=mRNA_F-distichus_contig105389.465.1|Name=mRNA_F-distichus_contig105389.465.1|organism=Fucus distichus monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at F-distichus_contig105389:945..1430+ (Fucus distichus monoicous)
CTCATGTTCGGTACGTTCAATGTTCGCACAGCAGCGGTCGACGGAGTCAG CGGTATCGGCCACATAGAGACCCAGCTGAGAACCTGTGCTGCAAAGGGTT GTGACGTCATCGGATTGCAGGAGACCAAAAGGGATGGAACTTCCGAAATT TCTGCATCTGGATGCCGCGTCTTCTTTAGTGGCGATTGCAGTATGGTTAA GGGTAGGAAAGGGCAGCATGGGGCTGGATTTGCGGTGAAGGAGGAGATCG TTAAAAAAGCTCGCGAGGACGGCATCACAATCGAGTGCATCAGCGCACGT CTCCTGAAGGCCCGAATTTCGATTAAATCAAACTTCGTTACGTTCGTGGA AGCCTATGCTCCGACCGAGGAAACGCCGGAGGGGCAGAAGGCCAAATACA TGGCAGCCCTCAATTACACCGTAGCATCAGTGCCCGCTCGGGAATACGTC TTCGTTTTAACAGACGCGAACGCTAGGACAGGGAAG
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Coding sequence (CDS) from alignment at F-distichus_contig105389:945..1430+

>mRNA_F-distichus_contig105389.465.1 ID=mRNA_F-distichus_contig105389.465.1|Name=mRNA_F-distichus_contig105389.465.1|organism=Fucus distichus monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at F-distichus_contig105389:945..1430+ (Fucus distichus monoicous)
ATGTTCGGTACGTTCAATGTTCGCACAGCAGCGGTCGACGGAGTCAGCGG
TATCGGCCACATAGAGACCCAGCTGAGAACCTGTGCTGCAAAGGGTTGTG
ACGTCATCGGATTGCAGGAGACCAAAAGGGATGGAACTTCCGAAATTTCT
GCATCTGGATGCCGCGTCTTCTTTAGTGGCGATTGCAGTATGGTTAAGGG
TAGGAAAGGGCAGCATGGGGCTGGATTTGCGGTGAAGGAGGAGATCGTTA
AAAAAGCTCGCGAGGACGGCATCACAATCGAGTGCATCAGCGCACGTCTC
CTGAAGGCCCGAATTTCGATTAAATCAAACTTCGTTACGTTCGTGGAAGC
CTATGCTCCGACCGAGGAAACGCCGGAGGGGCAGAAGGCCAAATACATGG
CAGCCCTCAATTACACCGTAGCATCAGTGCCCGCTCGGGAATACGTCTTC
GTTTTAACAGACGCGAACGCTAGGACAGGGAAGATGTTCGGTACGTTCAA
TGTTCGCACAGCAGCGGTCGACGGAGTCAGCGGTATCGGCCACATAGAGA
CCCAGCTGAGAACCTGTGCTGCAAAGGGTTGTGACGTCATCGGATTGCAG
GAGACCAAAAGGGATGGAACTTCCGAAATTTCTGCATCTGGATGCCGCGT
CTTCTTTAGTGGCGATTGCAGTATGGTTAAGGGTAGGAAAGGGCAGCATG
GGGCTGGATTTGCGGTGAAGGAGGAGATCGTTAAAAAAGCTCGCGAGGAC
GGCATCACAATCGAGTGCATCAGCGCACGTCTCCTGAAGGCCCGAATTTC
GATTAAATCAAACTTCGTTACGTTCGTGGAAGCCTATGCTCCGACCGAGG
AAACGCCGGAGGGGCAGAAGGCCAAATACATGGCAGCCCTCAATTACACC
GTAGCATCAGTGCCCGCTCGGGAATACGTCTTCGTTTTAACAGACGCGAA
CGCTAGGACAGGGAAG
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