mRNA_F-distichus_contig105389.465.1 (mRNA) Fucus distichus monoicous
|
Overview
Homology
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 132 bits (333), Expect = 6.700e-35 Identity = 77/170 (45.29%), Postives = 106/170 (62.35%), Query Frame = 1
Query: 1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE---ETPEGQ---KAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
L FGTFNV T A G + IGH + T ++ C+A GCDVIGLQET+R+G I+ G + +SG + K ++G HG G A+KE I + E+G T+ECIS RL+K R+ I ++ VTFV YAPTE T G K + AL+ + V +R+++ VL ANARTG+
Sbjct: 9 LSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGR 178
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 135 bits (341), Expect = 2.950e-34 Identity = 78/170 (45.88%), Postives = 108/170 (63.53%), Query Frame = 1
Query: 1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
L FGTFNVRT A G + IGH + T ++ C+A GCDVIGLQET+R G I+ G + +SG + K ++G HG G A+KE + + E+G T+ECIS RL+K R+ I ++ VTF+ YAPTE T EG K + AL+ + V +R+++ VL DANARTG+
Sbjct: 175 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 344
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 134 bits (338), Expect = 1.000e-33 Identity = 78/170 (45.88%), Postives = 107/170 (62.94%), Query Frame = 1
Query: 1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
L FGTFNVRT A G + IGH + T ++ C+A GCDVIGLQET+R G I+ G + +SG + K ++G HG G A+KE + + E+G T+ECIS RL+K R+ I ++ VTFV YAPTE T G K + AL+ + V +R+++ VL DANARTG+
Sbjct: 86 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 255
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 129 bits (324), Expect = 4.360e-33 Identity = 74/170 (43.53%), Postives = 105/170 (61.76%), Query Frame = 1
Query: 1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
L FGTFNVRT A G + IGH + T ++ C+A GCDVIGLQET+R+G I+ G + +SG + K ++G HG G A+KE + + E+G +ECI RL+K R+ I ++ +TFV YAPTE T G K + AL+ + V + +++ VL DANARTG+
Sbjct: 148 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGR 317
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 132 bits (333), Expect = 7.250e-33 Identity = 77/170 (45.29%), Postives = 107/170 (62.94%), Query Frame = 1
Query: 1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
L FGTFNV T A G + IGH + T ++ C+A GCDVIGLQET+R+G I+ G + +SG + K ++G HG G A+KE + + E+G T+ECIS RL+K R+ I ++ VTFV YAPTE T G K + AL+ + V +R+++ VL DANARTG+
Sbjct: 657 LSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 826
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.260e-32 Identity = 75/170 (44.12%), Postives = 104/170 (61.18%), Query Frame = 1
Query: 1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
L FGTFNVRT A G + IGH + T ++ C+A GCDVIGLQET+R G I+ G + +SG + K ++G HG G +KE + + E+G T+ECI RL+K R+ I ++ V FV YAPTE T G K + AL+ + V +R+++ VL DANARTG+
Sbjct: 81 LSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 250
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE) HSP 1 Score: 129 bits (323), Expect = 2.820e-32 Identity = 74/170 (43.53%), Postives = 104/170 (61.18%), Query Frame = 1
Query: 1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
L FGTFN+RT + IGH + T ++ C+A GCDV+GLQE +RDG I G + +SG + K ++G HG G A+KE + + E+G T+ECIS RL+K R+ I ++ VTFV YAPTE T G K + AL+ + V +R+++ VL DANARTG+
Sbjct: 25 LSFGTFNLRTLHYSDRNPIGHNVMTVMQICSATGCDVVGLQENRRDGQGSIPHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTGR 194
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE) HSP 1 Score: 130 bits (327), Expect = 4.520e-32 Identity = 76/168 (45.24%), Postives = 104/168 (61.90%), Query Frame = 1
Query: 1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANART 480
L FG FNVRT A G IGH + T ++ C+A GCDVIGLQET+R+G I+ G + +SG + K ++G HG G A+KE + + E+G T+ECIS RL+K R+ I ++ VTFV YAPTE T G K + AL+ + V +R+++ VL DANART
Sbjct: 59 LSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANART 226
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE) HSP 1 Score: 130 bits (327), Expect = 4.720e-32 Identity = 76/170 (44.71%), Postives = 107/170 (62.94%), Query Frame = 1
Query: 1 LMFGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAPTE--ETPEGQ----KAKYMAALNYTVASVPAREYVFVLTDANARTGK 486
L FGTFNVRT A G + IGH + T ++ C+A GCDVIGLQET+R+G I+ G + +SG + K ++G HG G A+KE + + E+G T+EC S RL+K R+ I ++ VTFV YA TE T G+ K + AL+ + V +R+++ VL DANARTG+
Sbjct: 820 LSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEVMWESVGEEGRTVECSSPRLMKVRLQIGRTCRVTFVVGYALTETVRTTAGRDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 989
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE) HSP 1 Score: 128 bits (322), Expect = 2.090e-31 Identity = 76/166 (45.78%), Postives = 102/166 (61.45%), Query Frame = 1
Query: 7 FGTFNVRTAAVDGVSGIGH-IETQLRTCAAKGCDVIGLQETKRDGTSEISASGCRVFFSGDCSMVKGRKGQHGAGFAVKEEIVKKAREDGITIECISARLLKARISI-KSNFVTFVEAYAP-TEETPEG----QKAKYMAALNYTVASVPAREYVFVLTDANARTG 483
FGTFNVRT A G + IGH + T ++ C+ GCDVIGLQET+R+G I+ G V +SG + K ++G HG G A+KE + A E+G T+ECIS RL+K R+ I ++ VTFV YAP T T G K AL+ + V +R+++ VL DANA TG
Sbjct: 125 FGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSLWTALDAAIREVHSRDHLVVLMDANAHTG 290 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105389.465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig105389.465.1 >prot_F-distichus_contig105389.465.1 ID=prot_F-distichus_contig105389.465.1|Name=mRNA_F-distichus_contig105389.465.1|organism=Fucus distichus monoicous|type=polypeptide|length=161bp MFGTFNVRTAAVDGVSGIGHIETQLRTCAAKGCDVIGLQETKRDGTSEISback to top mRNA from alignment at F-distichus_contig105389:945..1430+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig105389.465.1 ID=mRNA_F-distichus_contig105389.465.1|Name=mRNA_F-distichus_contig105389.465.1|organism=Fucus distichus monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at F-distichus_contig105389:945..1430+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig105389:945..1430+ >mRNA_F-distichus_contig105389.465.1 ID=mRNA_F-distichus_contig105389.465.1|Name=mRNA_F-distichus_contig105389.465.1|organism=Fucus distichus monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at F-distichus_contig105389:945..1430+ (Fucus distichus monoicous)back to top |