mRNA_F-distichus_contig105367.464.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105367.464.1
Unique NamemRNA_F-distichus_contig105367.464.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig105367.464.1 vs. uniprot
Match: I0YLH9_COCSC (UBC-like protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YLH9_COCSC)

HSP 1 Score: 127 bits (319), Expect = 6.790e-36
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1
Query:    7 GCFEFDIILPPDYPNRPPQVHFLTTGRGRIRFNPNLYNTGKVCLSLLGTWSGPGWDPKTSTLLQV 201
            GCF FDI+LPP+YPN+PP+V FLTTG GR+RFNPNLYN GKVCLSLLGTWSGP WDP TSTLLQV
Sbjct:   15 GCFLFDILLPPEYPNKPPEVQFLTTGAGRVRFNPNLYNCGKVCLSLLGTWSGPSWDPGTSTLLQV 79          
BLAST of mRNA_F-distichus_contig105367.464.1 vs. uniprot
Match: D7G0A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0A1_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.900e-35
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    7 GCFEFDIILPPDYPNRPPQVHFLTTGRGRIRFNPNLYNTGKVCLSLLGTWSGPGWDPKTSTLLQV 201
            GCFEFDI+LPPDYPN PP+VHFLTTG GR+RFNPNLY TGKVCLSLLGTW+GPGW+PKTSTLLQV
Sbjct:  761 GCFEFDILLPPDYPNSPPKVHFLTTGSGRVRFNPNLYQTGKVCLSLLGTWAGPGWNPKTSTLLQV 825          
BLAST of mRNA_F-distichus_contig105367.464.1 vs. uniprot
Match: A0A7R9W000_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9W000_9CHLO)

HSP 1 Score: 127 bits (319), Expect = 1.860e-34
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    7 GCFEFDIILPPDYPNRPPQVHFLTTGRGRIRFNPNLYNTGKVCLSLLGTWSGPGWDPKTSTLLQV 201
            G F FDI+LPPDYPN PPQVHFLTTG GR+RFNPNLYN GKVCLSLLGTWSGP W P TSTLLQV
Sbjct:  111 GAFVFDILLPPDYPNHPPQVHFLTTGEGRVRFNPNLYNCGKVCLSLLGTWSGPSWQPGTSTLLQV 175          
BLAST of mRNA_F-distichus_contig105367.464.1 vs. uniprot
Match: A0A7S0N848_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N848_9CRYP)

HSP 1 Score: 114 bits (284), Expect = 1.270e-30
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    7 GCFEFDIILPPDYPNRPPQVHFLTTGRGRIRFNPNLYNTGKVCLSLLGTWSGPGWDPKTSTLLQV 201
            G FEFD++LPPDYPN PPQV   TTG GR+RFNPNLY  G VCLSLLGTWSGPGW+P  S+LLQV
Sbjct:   31 GLFEFDVLLPPDYPNVPPQVRLTTTGGGRVRFNPNLYADGTVCLSLLGTWSGPGWEPGRSSLLQV 95          
BLAST of mRNA_F-distichus_contig105367.464.1 vs. uniprot
Match: A0A5J4YG42_9CHLO (UBC core domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YG42_9CHLO)

HSP 1 Score: 119 bits (299), Expect = 4.340e-30
Identity = 53/65 (81.54%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    7 GCFEFDIILPPDYPNRPPQVHFLTTGRGRIRFNPNLYNTGKVCLSLLGTWSGPGWDPKTSTLLQV 201
            GCF FDI LP +YPN PP VHFLTTG GRIRFNPNLY  GKVCLSLLGTWSGP WDP  STLLQV
Sbjct:  390 GCFLFDIFLPANYPNAPPSVHFLTTGGGRIRFNPNLYECGKVCLSLLGTWSGPSWDPTHSTLLQV 454          
BLAST of mRNA_F-distichus_contig105367.464.1 vs. uniprot
Match: A0A835YXY9_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.340e-30
Identity = 49/65 (75.38%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    7 GCFEFDIILPPDYPNRPPQVHFLTTGRGRIRFNPNLYNTGKVCLSLLGTWSGPGWDPKTSTLLQV 201
            G FEFDI LP  YP   P+VHFLTTG G +RFNPNLYN+GKVCLSLLGTW GPGW+P  STLLQV
Sbjct:    2 GLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQV 66          
BLAST of mRNA_F-distichus_contig105367.464.1 vs. uniprot
Match: A0A0L0F5W7_9EUKA (UBC core domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0F5W7_9EUKA)

HSP 1 Score: 108 bits (269), Expect = 1.810e-29
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 1
Query:   19 FDIILPPDYPNRPPQVHFLTTGRGRIRFNPNLYNTGKVCLSLLGTWSGPGWDPKTSTLLQV 201
            FD+ LP DYP +PPQ+HF+TTG G +RFNPNLYN G VCLSLLGTW GPGW P  STL+QV
Sbjct:    1 FDLYLPSDYPKKPPQLHFVTTGHGTVRFNPNLYNNGTVCLSLLGTWGGPGWKPSLSTLIQV 61          
BLAST of mRNA_F-distichus_contig105367.464.1 vs. uniprot
Match: A0A2P6TCN2_CHLSO (Ubiquitin conjugating enzyme family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TCN2_CHLSO)

HSP 1 Score: 118 bits (295), Expect = 2.150e-29
Identity = 51/65 (78.46%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    7 GCFEFDIILPPDYPNRPPQVHFLTTGRGRIRFNPNLYNTGKVCLSLLGTWSGPGWDPKTSTLLQV 201
            G F FDI+LPPDYPNRPPQV FLTTG GR+R NPNLY  GKVCLSLLGTW+GP W P  STLLQV
Sbjct:  528 GAFAFDILLPPDYPNRPPQVQFLTTGGGRVRLNPNLYENGKVCLSLLGTWAGPSWQPGQSTLLQV 592          
BLAST of mRNA_F-distichus_contig105367.464.1 vs. uniprot
Match: A0A2R6WNY5_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WNY5_MARPO)

HSP 1 Score: 118 bits (295), Expect = 2.270e-29
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 QGGCFEFDIILPPDYPNRPPQVHFLTTGRGRIRFNPNLYNTGKVCLSLLGTWSGPGWDPKTSTLLQV 201
            Q G F FDI LPPDYP  PP VHFLTTG G++RFNPNLY++GK+CLSLLGTWSGPGW P  STLLQV
Sbjct:  698 QNGLFMFDIFLPPDYPQVPPHVHFLTTGGGKVRFNPNLYDSGKICLSLLGTWSGPGWVPGKSTLLQV 764          
BLAST of mRNA_F-distichus_contig105367.464.1 vs. uniprot
Match: A0A2K1JHY5_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JHY5_PHYPA)

HSP 1 Score: 117 bits (292), Expect = 5.760e-29
Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 QGGCFEFDIILPPDYPNRPPQVHFLTTGRGRIRFNPNLYNTGKVCLSLLGTWSGPGWDPKTSTLLQV 201
            Q G F FDI LP DYP  PP VHFLTTG G++RFNPNLY+TGK+CLSLLGTWSGPGW P  STLLQV
Sbjct:  701 QNGIFLFDIFLPADYPQVPPSVHFLTTGGGKVRFNPNLYDTGKICLSLLGTWSGPGWTPGKSTLLQV 767          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105367.464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I0YLH9_COCSC6.790e-3683.08UBC-like protein (Fragment) n=1 Tax=Coccomyxa sube... [more]
D7G0A1_ECTSI1.900e-3587.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9W000_9CHLO1.860e-3484.62Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7S0N848_9CRYP1.270e-3075.38Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A5J4YG42_9CHLO4.340e-3081.54UBC core domain-containing protein n=1 Tax=Treboux... [more]
A0A835YXY9_9STRA5.340e-3075.38Ubiquitin-conjugating enzyme/RWD-like protein (Fra... [more]
A0A0L0F5W7_9EUKA1.810e-2972.13UBC core domain-containing protein (Fragment) n=1 ... [more]
A0A2P6TCN2_CHLSO2.150e-2978.46Ubiquitin conjugating enzyme family n=1 Tax=Chlore... [more]
A0A2R6WNY5_MARPO2.270e-2976.12Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A2K1JHY5_PHYPA5.760e-2976.12Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105367contigF-distichus_contig105367:1226..1426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue1.7e-30
Seed eggNOG ortholog2880.D7G0A1
KEGG koko:K03178,ko:K10586,ko:K10699
KEGG Pathwayko04120,ko04214,ko04215,ko05012,map04120,map04214,map04215,map05012
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-14_005080.1
EC2.3.2.23,6.2.1.45
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.3455386-CDS-F-distichus_contig105367:1225..14261622928979.3455386-CDS-F-distichus_contig105367:1225..1426Fucus distichus monoicousCDSF-distichus_contig105367 1226..1426 +
1690885089.32903-CDS-F-distichus_contig105367:1225..14261690885089.32903-CDS-F-distichus_contig105367:1225..1426Fucus distichus monoicousCDSF-distichus_contig105367 1226..1426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105367.464.1prot_F-distichus_contig105367.464.1Fucus distichus monoicouspolypeptideF-distichus_contig105367 1226..1426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105367.464.1

>prot_F-distichus_contig105367.464.1 ID=prot_F-distichus_contig105367.464.1|Name=mRNA_F-distichus_contig105367.464.1|organism=Fucus distichus monoicous|type=polypeptide|length=67bp
QGGCFEFDIILPPDYPNRPPQVHFLTTGRGRIRFNPNLYNTGKVCLSLLG
TWSGPGWDPKTSTLLQV
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mRNA from alignment at F-distichus_contig105367:1226..1426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105367.464.1 ID=mRNA_F-distichus_contig105367.464.1|Name=mRNA_F-distichus_contig105367.464.1|organism=Fucus distichus monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at F-distichus_contig105367:1226..1426+ (Fucus distichus monoicous)
CAGGGGGGCTGCTTCGAGTTCGATATTATTTTGCCTCCGGACTACCCCAA CCGCCCTCCGCAAGTCCACTTTCTGACCACGGGCAGAGGCAGGATCCGCT TCAATCCCAACCTGTACAACACGGGCAAGGTATGCCTGTCGCTGCTTGGC ACGTGGTCGGGACCCGGGTGGGACCCCAAGACTTCCACGCTTTTGCAGGT G
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Coding sequence (CDS) from alignment at F-distichus_contig105367:1226..1426+

>mRNA_F-distichus_contig105367.464.1 ID=mRNA_F-distichus_contig105367.464.1|Name=mRNA_F-distichus_contig105367.464.1|organism=Fucus distichus monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at F-distichus_contig105367:1226..1426+ (Fucus distichus monoicous)
CAGGGGGGCTGCTTCGAGTTCGATATTATTTTGCCTCCGGACTACCCCAA
CCGCCCTCCGCAAGTCCACTTTCTGACCACGGGCAGAGGCAGGATCCGCT
TCAATCCCAACCTGTACAACACGGGCAAGGTATGCCTGTCGCTGCTTGGC
ACGTGGTCGGGACCCGGGTGGGACCCCAAGACTTCCACGCTTTTGCAGGT
GCAGGGGGGCTGCTTCGAGTTCGATATTATTTTGCCTCCGGACTACCCCA
ACCGCCCTCCGCAAGTCCACTTTCTGACCACGGGCAGAGGCAGGATCCGC
TTCAATCCCAACCTGTACAACACGGGCAAGGTATGCCTGTCGCTGCTTGG
CACGTGGTCGGGACCCGGGTGGGACCCCAAGACTTCCACGCTTTTGCAGG
TG
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