mRNA_F-distichus_contig105339.462.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105339.462.1
Unique NamemRNA_F-distichus_contig105339.462.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig105339.462.1 vs. uniprot
Match: A0A6H5L1F6_9PHAE (Flavin_Reduct domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.210e-27
Identity = 49/58 (84.48%), Postives = 57/58 (98.28%), Query Frame = 1
Query:    4 EFVVSIISEWFVEAANHTCGNFPPEVDEMEVAGLTPLESIIVSPPRVKESAVNMECKV 177
            EFVVSI+S+WFVEAANHTCG+FPPEVDEM+VAGLTP++S IV+PPR+KESAVNMECKV
Sbjct:  150 EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV 207          
BLAST of mRNA_F-distichus_contig105339.462.1 vs. uniprot
Match: D7G8R2_ECTSI (Flavin_Reduct domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 3.960e-27
Identity = 48/58 (82.76%), Postives = 56/58 (96.55%), Query Frame = 1
Query:    4 EFVVSIISEWFVEAANHTCGNFPPEVDEMEVAGLTPLESIIVSPPRVKESAVNMECKV 177
            EFVVSI+S+WFVEAANHTCG+ PPEVDEM+VAGLTP++S IV+PPR+KESAVNMECKV
Sbjct:  108 EFVVSIMSDWFVEAANHTCGSLPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV 165          
BLAST of mRNA_F-distichus_contig105339.462.1 vs. uniprot
Match: A0A7S0DUQ4_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DUQ4_9CRYP)

HSP 1 Score: 98.6 bits (244), Expect = 9.220e-25
Identity = 42/59 (71.19%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 REFVVSIISEWFVEAANHTCGNFPPEVDEMEVAGLTPLESIIVSPPRVKESAVNMECKV 177
            +EFVV+I+SEW+ E+ANHTCGNFPPEV+EM+VAGLTPL S ++SPPRV ESA+N EC++
Sbjct:   32 KEFVVNIMSEWYAESANHTCGNFPPEVNEMDVAGLTPLPSEMISPPRVAESAINFECRL 90          
BLAST of mRNA_F-distichus_contig105339.462.1 vs. uniprot
Match: L1IE62_GUITC (Flavin_Reduct domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IE62_GUITC)

HSP 1 Score: 99.0 bits (245), Expect = 5.820e-24
Identity = 43/59 (72.88%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 REFVVSIISEWFVEAANHTCGNFPPEVDEMEVAGLTPLESIIVSPPRVKESAVNMECKV 177
            +EFVV+I+SEW+ E+ANHTCGNFPPEV+EM+VAGLTPL S I+SPPRV ESA+N EC++
Sbjct:  129 KEFVVNIMSEWYAESANHTCGNFPPEVNEMDVAGLTPLPSKIISPPRVAESALNFECRL 187          
BLAST of mRNA_F-distichus_contig105339.462.1 vs. uniprot
Match: A0A150H2H2_GONPE (Flavin_Reduct domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H2H2_GONPE)

HSP 1 Score: 95.5 bits (236), Expect = 6.450e-23
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    4 EFVVSIISEWFVEAANHTCGNFPPEVDEMEVAGLTPLESIIVSPPRVKESAVNMECKV 177
            EFVV+IISEWF EAANHTCG+FPP VDEM +AGLTPL S  V PPRV ESAV+MEC+V
Sbjct:   70 EFVVNIISEWFAEAANHTCGDFPPGVDEMALAGLTPLPSTKVKPPRVAESAVHMECRV 127          
BLAST of mRNA_F-distichus_contig105339.462.1 vs. uniprot
Match: A0A8J4FBD9_9CHLO (Flavin_Reduct domain-containing protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4FBD9_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 9.640e-22
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 1
Query:    1 REFVVSIISEWFVEAANHTCGNFPPEVDEMEVAGLTPLESIIVSPPRVKESAVNMECKV 177
            REFVV+IISEWFVEAANHTCG++PP VDEM+++GL PL S  V PPRV ESAV++ECK+
Sbjct:  208 REFVVNIISEWFVEAANHTCGDYPPGVDEMKLSGLNPLPSTKVKPPRVAESAVHLECKL 266          
BLAST of mRNA_F-distichus_contig105339.462.1 vs. uniprot
Match: A0A5B8MV84_9CHLO (Flavin_Reduct domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MV84_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 3.800e-21
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1
Query:    1 REFVVSIISEWFVEAANHTCGNFPPEVDEMEVAGLTPLESIIVSPPRVKESAVNMECKV 177
            +EF V+++SEWF+E ANHTCGN+ PEVDEM ++GLT L S+ V PPRVKESAV+MECK+
Sbjct:  148 KEFTVNVLSEWFLEQANHTCGNYDPEVDEMALSGLTKLPSLKVKPPRVKESAVHMECKL 206          
BLAST of mRNA_F-distichus_contig105339.462.1 vs. uniprot
Match: A0A2J7ZSE2_9CHLO (Flavin_Reduct domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZSE2_9CHLO)

HSP 1 Score: 94.0 bits (232), Expect = 4.160e-21
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1
Query:    1 REFVVSIISEWFVEAANHTCGNFPPEVDEMEVAGLTPLESIIVSPPRVKESAVNMEC 171
            R+FVV+IISEWFVEAANHTCG++PP VDEM++AGLTPL S  V PPRV ESA+ MEC
Sbjct:   27 RQFVVNIISEWFVEAANHTCGDYPPGVDEMQLAGLTPLPSTHVRPPRVAESALQMEC 83          
BLAST of mRNA_F-distichus_contig105339.462.1 vs. uniprot
Match: D8UB02_VOLCA (Flavin_Reduct domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UB02_VOLCA)

HSP 1 Score: 93.2 bits (230), Expect = 9.800e-21
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 1
Query:    1 REFVVSIISEWFVEAANHTCGNFPPEVDEMEVAGLTPLESIIVSPPRVKESAVNMECKV 177
            REFVV++ISEWFVEAANHTCG++PP VDEM +AGL P+ S  V PPRV ESAV++EC+V
Sbjct:  728 REFVVNVISEWFVEAANHTCGDYPPGVDEMRLAGLHPMPSTKVRPPRVAESAVHLECRV 786          
BLAST of mRNA_F-distichus_contig105339.462.1 vs. uniprot
Match: A0A7S1HEZ1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEZ1_HEMAN)

HSP 1 Score: 90.5 bits (223), Expect = 1.300e-20
Identity = 39/58 (67.24%), Postives = 52/58 (89.66%), Query Frame = 1
Query:    4 EFVVSIISEWFVEAANHTCGNFPPEVDEMEVAGLTPLESIIVSPPRVKESAVNMECKV 177
            EFVV+I+S+WF+EAANHTCG+F PE +EM++AGLTPL S++V PPRV ESA +MEC++
Sbjct:  143 EFVVNIMSDWFIEAANHTCGDFVPEDNEMDLAGLTPLPSVVVKPPRVGESAFHMECRL 200          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105339.462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1F6_9PHAE1.210e-2784.48Flavin_Reduct domain-containing protein n=1 Tax=Ec... [more]
D7G8R2_ECTSI3.960e-2782.76Flavin_Reduct domain-containing protein n=1 Tax=Ec... [more]
A0A7S0DUQ4_9CRYP9.220e-2571.19Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1IE62_GUITC5.820e-2472.88Flavin_Reduct domain-containing protein n=2 Tax=Gu... [more]
A0A150H2H2_GONPE6.450e-2377.59Flavin_Reduct domain-containing protein n=1 Tax=Go... [more]
A0A8J4FBD9_9CHLO9.640e-2272.88Flavin_Reduct domain-containing protein (Fragment)... [more]
A0A5B8MV84_9CHLO3.800e-2167.80Flavin_Reduct domain-containing protein n=1 Tax=Ch... [more]
A0A2J7ZSE2_9CHLO4.160e-2175.44Flavin_Reduct domain-containing protein n=1 Tax=Te... [more]
D8UB02_VOLCA9.800e-2171.19Flavin_Reduct domain-containing protein n=1 Tax=Vo... [more]
A0A7S1HEZ1_HEMAN1.300e-2067.24Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105339contigF-distichus_contig105339:1439..1615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.2e-21
Seed eggNOG ortholog2880.D7G8R2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Flavin reductase like domain
EggNOG OGs2CXSN@1,2RZGA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.249607-CDS-F-distichus_contig105339:1438..16151622928979.249607-CDS-F-distichus_contig105339:1438..1615Fucus distichus monoicousCDSF-distichus_contig105339 1439..1615 -
1690885089.303164-CDS-F-distichus_contig105339:1438..16151690885089.303164-CDS-F-distichus_contig105339:1438..1615Fucus distichus monoicousCDSF-distichus_contig105339 1439..1615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105339.462.1prot_F-distichus_contig105339.462.1Fucus distichus monoicouspolypeptideF-distichus_contig105339 1439..1615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105339.462.1

>prot_F-distichus_contig105339.462.1 ID=prot_F-distichus_contig105339.462.1|Name=mRNA_F-distichus_contig105339.462.1|organism=Fucus distichus monoicous|type=polypeptide|length=59bp
REFVVSIISEWFVEAANHTCGNFPPEVDEMEVAGLTPLESIIVSPPRVKE
SAVNMECKV
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mRNA from alignment at F-distichus_contig105339:1439..1615-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105339.462.1 ID=mRNA_F-distichus_contig105339.462.1|Name=mRNA_F-distichus_contig105339.462.1|organism=Fucus distichus monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at F-distichus_contig105339:1439..1615- (Fucus distichus monoicous)
AGGGAATTTGTGGTTTCCATCATAAGCGAATGGTTCGTCGAAGCCGCGAA CCACACGTGCGGCAACTTTCCCCCCGAAGTGGACGAGATGGAAGTGGCTG GCTTGACACCGTTGGAATCGATCATCGTATCTCCACCGAGGGTCAAGGAG TCCGCCGTTAACATGGAGTGCAAGGTA
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Coding sequence (CDS) from alignment at F-distichus_contig105339:1439..1615-

>mRNA_F-distichus_contig105339.462.1 ID=mRNA_F-distichus_contig105339.462.1|Name=mRNA_F-distichus_contig105339.462.1|organism=Fucus distichus monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at F-distichus_contig105339:1439..1615- (Fucus distichus monoicous)
AGGGAATTTGTGGTTTCCATCATAAGCGAATGGTTCGTCGAAGCCGCGAA
CCACACGTGCGGCAACTTTCCCCCCGAAGTGGACGAGATGGAAGTGGCTG
GCTTGACACCGTTGGAATCGATCATCGTATCTCCACCGAGGGTCAAGGAG
TCCGCCGTTAACATGGAGTGCAAGGTAAGGGAATTTGTGGTTTCCATCAT
AAGCGAATGGTTCGTCGAAGCCGCGAACCACACGTGCGGCAACTTTCCCC
CCGAAGTGGACGAGATGGAAGTGGCTGGCTTGACACCGTTGGAATCGATC
ATCGTATCTCCACCGAGGGTCAAGGAGTCCGCCGTTAACATGGAGTGCAA
GGTA
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