mRNA_F-distichus_contig105274.458.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105274.458.1
Unique NamemRNA_F-distichus_contig105274.458.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105274.458.1 vs. uniprot
Match: A0A6H5KQK5_9PHAE (PSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQK5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.920e-19
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:   64 GAGPRLSRKQRKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLK 210
            GAGPRLSRK RKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLK
Sbjct:  209 GAGPRLSRKARKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLK 257
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BLAST of mRNA_F-distichus_contig105274.458.1 vs. uniprot
Match: A0A836CFT2_9STRA (Proline-rich spliceosome-associated family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.070e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:   64 GAGPRLSRKQRKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLK 210
            GAG +LSRK RKLKSRL+VAELKQLVQRPDVVEAHDVTAADPRMLV LK
Sbjct:  136 GAG-KLSRKARKLKSRLTVAELKQLVQRPDVVEAHDVTAADPRMLVHLK 183
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BLAST of mRNA_F-distichus_contig105274.458.1 vs. uniprot
Match: A0A7S2W121_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W121_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.550e-15
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   34 DGGDMDSDDDGAGPRLSRKQRKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLK 210
            D    D++++G   +LSRK RK +SRLSVAELKQLV RPDVVEAHD+TAADPR+LVFLK
Sbjct:  100 DAAGQDAEEEGGEVKLSRKARKKQSRLSVAELKQLVGRPDVVEAHDITAADPRLLVFLK 158
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BLAST of mRNA_F-distichus_contig105274.458.1 vs. uniprot
Match: A0A7S2Y464_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y464_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.900e-14
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   43 DMDSDDDGAG-PRLSRKQRKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLK 210
            D   +DD AG  +LSRK RK  +RLSVAELKQLVQRPDVVEAHDVTAADPR+LVFLK
Sbjct:  172 DEPKEDDPAGVKKLSRKARKRLNRLSVAELKQLVQRPDVVEAHDVTAADPRLLVFLK 228
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BLAST of mRNA_F-distichus_contig105274.458.1 vs. uniprot
Match: A0A7S3XPZ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPZ4_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 4.690e-14
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   73 PRLSRKQRKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLK 210
            PRLSRKQRK   RLSVAELKQLVQRP+VVEAHDVTAADPR+LV LK
Sbjct:   17 PRLSRKQRKKLHRLSVAELKQLVQRPEVVEAHDVTAADPRLLVHLK 62
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BLAST of mRNA_F-distichus_contig105274.458.1 vs. uniprot
Match: A0A7S2MJ71_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MJ71_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.350e-13
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   49 DSDDDGAGPRLSRKQRKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLK 210
            D D++    ++SRK RK  SRLSVAELKQLV RPDVVEAHDVTAADPR+LV+LK
Sbjct:  130 DGDEEDGEKKMSRKARKKMSRLSVAELKQLVVRPDVVEAHDVTAADPRLLVYLK 183
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BLAST of mRNA_F-distichus_contig105274.458.1 vs. uniprot
Match: A0A4D9D8E8_9STRA (PSP domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8E8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 7.950e-13
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 EAAAKKKAGAED-GGDMDSDDDGAGPRLSRKQRKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLK 210
            E A +K +G E  GG+ D      G RLSRKQRK  +RLSVAELKQLV RPDVVEAHDVT+ DP++LV +K
Sbjct:  121 EGAGEKVSGGEGRGGEEDXXXXKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMK 191
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BLAST of mRNA_F-distichus_contig105274.458.1 vs. uniprot
Match: W7U4A3_9STRA (Splicing factor 3b subunit 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4A3_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.190e-13
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 EAAAKKKAGAED-GGDMDSDDDGAGPRLSRKQRKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLK 210
            E A +K +G E  GG+ D      G RLSRKQRK  +RLSVAELKQLV RPDVVEAHDVT+ DP++LV +K
Sbjct:  118 EGAGEKVSGGEGRGGEEDXXXXKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMK 188
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BLAST of mRNA_F-distichus_contig105274.458.1 vs. uniprot
Match: A0A8K1CNA1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNA1_PYTOL)

HSP 1 Score: 70.9 bits (172), Expect = 1.520e-12
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   25 GAEDGGDMDSDDDGAGPR-LSRKQRKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLK 210
            G ++G +  SDD+ A  + LSRKQRK   RLSVAELKQLV  PDVVEAHDVT+ADPR LV+LK
Sbjct:  112 GDDNGDERPSDDENATEKQLSRKQRKKVKRLSVAELKQLVAYPDVVEAHDVTSADPRFLVYLK 174
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BLAST of mRNA_F-distichus_contig105274.458.1 vs. uniprot
Match: A0A8J2SAZ8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAZ8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.080e-12
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 EAAAKKKAGAEDGGDMDSDDDGAGPRLSRKQRKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLK 210
            E AA+  A  +   D+D +D+    RLSRKQRK  SR++VAELKQ+V RP+ VEAHDVTA+DPR+LVFLK
Sbjct:   94 EEAAEAPAAEKATDDVD-EDEAPEKRLSRKQRKAMSRMTVAELKQVVARPEAVEAHDVTASDPRLLVFLK 162
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105274.458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQK5_9PHAE1.920e-1997.96PSP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CFT2_9STRA4.070e-1589.80Proline-rich spliceosome-associated family protein... [more]
A0A7S2W121_9STRA7.550e-1569.49Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2Y464_9STRA1.900e-1477.19Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3XPZ4_HETAK4.690e-1486.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2MJ71_9STRA2.350e-1372.22Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A4D9D8E8_9STRA7.950e-1361.97PSP domain-containing protein n=3 Tax=Monodopsidac... [more]
W7U4A3_9STRA8.190e-1361.97Splicing factor 3b subunit 2 n=1 Tax=Nannochlorops... [more]
A0A8K1CNA1_PYTOL1.520e-1266.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J2SAZ8_9STRA2.080e-1260.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105274contigF-distichus_contig105274:1289..1522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog2880.D7FNF6
Preferred nameSF3B2
KEGG koko:K12829,ko:K16061
KEGG Pathwayko03040,ko04120,ko04215,ko05145,ko05200,ko05222,map03040,map04120,map04215,map05145,map05200,map05222
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5182@1,KOG2330@2759
COG Functional cat.AV
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04121
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.6614563-CDS-F-distichus_contig105274:1288..15221622928978.6614563-CDS-F-distichus_contig105274:1288..1522Fucus distichus monoicousCDSF-distichus_contig105274 1289..1522 +
1690885088.5441742-CDS-F-distichus_contig105274:1288..15221690885088.5441742-CDS-F-distichus_contig105274:1288..1522Fucus distichus monoicousCDSF-distichus_contig105274 1289..1522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105274.458.1prot_F-distichus_contig105274.458.1Fucus distichus monoicouspolypeptideF-distichus_contig105274 1289..1522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105274.458.1

>prot_F-distichus_contig105274.458.1 ID=prot_F-distichus_contig105274.458.1|Name=mRNA_F-distichus_contig105274.458.1|organism=Fucus distichus monoicous|type=polypeptide|length=78bp
EAAAKKKAGAEDGGDMDSDDDGAGPRLSRKQRKLKSRLSVAELKQLVQRP
DVVEAHDVTAADPRMLVFLKVCLRKLL*
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mRNA from alignment at F-distichus_contig105274:1289..1522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105274.458.1 ID=mRNA_F-distichus_contig105274.458.1|Name=mRNA_F-distichus_contig105274.458.1|organism=Fucus distichus monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at F-distichus_contig105274:1289..1522+ (Fucus distichus monoicous)
GAGGCGGCCGCGAAAAAGAAGGCGGGAGCGGAAGATGGGGGGGACATGGA
CTCGGACGACGACGGGGCGGGCCCACGATTATCGCGGAAGCAGCGGAAAC
TGAAGAGCAGGCTCTCCGTGGCAGAGCTCAAGCAGCTCGTACAGCGGCCG
GACGTCGTTGAGGCGCATGACGTGACGGCAGCAGATCCACGAATGTTGGT
CTTCTTAAAGGTATGTTTGCGCAAACTGCTGTAG
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Coding sequence (CDS) from alignment at F-distichus_contig105274:1289..1522+

>mRNA_F-distichus_contig105274.458.1 ID=mRNA_F-distichus_contig105274.458.1|Name=mRNA_F-distichus_contig105274.458.1|organism=Fucus distichus monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at F-distichus_contig105274:1289..1522+ (Fucus distichus monoicous)
GAGGCGGCCGCGAAAAAGAAGGCGGGAGCGGAAGATGGGGGGGACATGGA
CTCGGACGACGACGGGGCGGGCCCACGATTATCGCGGAAGCAGCGGAAAC
TGAAGAGCAGGCTCTCCGTGGCAGAGCTCAAGCAGCTCGTACAGCGGCCG
GACGTCGTTGAGGCGCATGACGTGACGGCAGCAGATCCACGAATGTTGGT
CTTCTTAAAGGTATGTTTGCGCAAACTGCTGTAGGAGGCGGCCGCGAAAA
AGAAGGCGGGAGCGGAAGATGGGGGGGACATGGACTCGGACGACGACGGG
GCGGGCCCACGATTATCGCGGAAGCAGCGGAAACTGAAGAGCAGGCTCTC
CGTGGCAGAGCTCAAGCAGCTCGTACAGCGGCCGGACGTCGTTGAGGCGC
ATGACGTGACGGCAGCAGATCCACGAATGTTGGTCTTCTTAAAGGTATGT
TTGCGCAAACTGCTGTAG
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