mRNA_F-distichus_contig105219.456.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105219.456.1
Unique NamemRNA_F-distichus_contig105219.456.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105219.456.1 vs. uniprot
Match: D8LJ08_ECTSI (Carotenoid oxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ08_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.070e-17
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    4 GVPKKFLESIRTEPWRGALEPCADHSLTEVQVEGKLPQRLEGTLFRNG 147
            GVP+ FL+SIR EPWRG L+PC DH LTE++V GK+P+ LEGTLFRNG
Sbjct:   63 GVPEVFLQSIREEPWRGTLQPCIDHPLTEIEVTGKVPKTLEGTLFRNG 110
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BLAST of mRNA_F-distichus_contig105219.456.1 vs. uniprot
Match: A0A7S0GQP0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GQP0_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 7.290e-10
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   10 PKKFLESIRTEPWRGALEPCADHSLTEVQVEGKLPQRLEGTLFRNG 147
            PK++L++I  EPWRG LEP +D S    +V GK+P+ LEG+L RNG
Sbjct:   57 PKRYLDNILAEPWRGGLEPISDISPYAPEVSGKIPEDLEGSLLRNG 102
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BLAST of mRNA_F-distichus_contig105219.456.1 vs. uniprot
Match: A0A7S0IJC1_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0IJC1_MICPS)

HSP 1 Score: 56.6 bits (135), Expect = 4.760e-8
Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   10 PKKFLESIRTEPWRGALEPCADHSLTEVQVEGKLPQRLEGTLFRNG 147
            P   ++++   PWRG LEPC DH L  V+VEG +P+ L G+ +R G
Sbjct:   84 PPDVVDAVDAWPWRGGLEPCGDHDLASVEVEGTIPRDLSGSFYRVG 129
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BLAST of mRNA_F-distichus_contig105219.456.1 vs. uniprot
Match: A0A7S3Z609_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z609_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 7.150e-6
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 PGVPKKFLESIRTEPWRGALEPCADHSLTEVQVEGKLPQRLEGTLFRNG 147
            P V  + +ES    PWRG LEPC + +    +V GK+P+ L+G L+RNG
Sbjct:   83 PDVQARIVES----PWRGGLEPCPETTGDPAEVIGKIPEALDGVLYRNG 127
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BLAST of mRNA_F-distichus_contig105219.456.1 vs. uniprot
Match: A0A1Y1I7A0_KLENI (Carotenoid oxygenase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I7A0_KLENI)

HSP 1 Score: 50.1 bits (118), Expect = 9.780e-6
Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    7 VPKKFLESIRTEPWRGALEPCADHSLT--EVQVEGKLPQRLEGTLFRNG 147
            VP+   E++RT+PW+G LEP  + S T     V+G++P  L GT +R G
Sbjct:   78 VPEYVKEAVRTQPWKGVLEPSTERSFTVDSSHVKGRIPDDLRGTYYRLG 126
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105219.456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJ08_ECTSI2.070e-1770.83Carotenoid oxygenase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S0GQP0_9EUKA7.290e-1054.35Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S0IJC1_MICPS4.760e-845.65Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
A0A7S3Z609_9EUKA7.150e-644.90Hypothetical protein n=3 Tax=Lotharella globosa Ta... [more]
A0A1Y1I7A0_KLENI9.780e-642.86Carotenoid oxygenase n=1 Tax=Klebsormidium nitens ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105219contigF-distichus_contig105219:487..633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue8.3e-14
Seed eggNOG ortholog2880.D8LJ08
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGsCOG3670@1,KOG1285@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.5443254-CDS-F-distichus_contig105219:486..6331622928978.5443254-CDS-F-distichus_contig105219:486..633Fucus distichus monoicousCDSF-distichus_contig105219 487..633 +
1690885088.421014-CDS-F-distichus_contig105219:486..6331690885088.421014-CDS-F-distichus_contig105219:486..633Fucus distichus monoicousCDSF-distichus_contig105219 487..633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105219.456.1prot_F-distichus_contig105219.456.1Fucus distichus monoicouspolypeptideF-distichus_contig105219 487..633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105219.456.1

>prot_F-distichus_contig105219.456.1 ID=prot_F-distichus_contig105219.456.1|Name=mRNA_F-distichus_contig105219.456.1|organism=Fucus distichus monoicous|type=polypeptide|length=49bp
PGVPKKFLESIRTEPWRGALEPCADHSLTEVQVEGKLPQRLEGTLFRNG
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mRNA from alignment at F-distichus_contig105219:487..633+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105219.456.1 ID=mRNA_F-distichus_contig105219.456.1|Name=mRNA_F-distichus_contig105219.456.1|organism=Fucus distichus monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at F-distichus_contig105219:487..633+ (Fucus distichus monoicous)
CCGGGGGTCCCAAAAAAGTTCCTCGAGTCGATAAGAACAGAGCCATGGCG
TGGCGCCTTGGAACCCTGTGCTGACCATTCCCTGACCGAGGTTCAAGTCG
AAGGCAAGCTTCCGCAAAGATTGGAAGGGACACTTTTCCGCAACGGT
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Coding sequence (CDS) from alignment at F-distichus_contig105219:487..633+

>mRNA_F-distichus_contig105219.456.1 ID=mRNA_F-distichus_contig105219.456.1|Name=mRNA_F-distichus_contig105219.456.1|organism=Fucus distichus monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at F-distichus_contig105219:487..633+ (Fucus distichus monoicous)
CCGGGGGTCCCAAAAAAGTTCCTCGAGTCGATAAGAACAGAGCCATGGCG
TGGCGCCTTGGAACCCTGTGCTGACCATTCCCTGACCGAGGTTCAAGTCG
AAGGCAAGCTTCCGCAAAGATTGGAAGGGACACTTTTCCGCAACGGTCCG
GGGGTCCCAAAAAAGTTCCTCGAGTCGATAAGAACAGAGCCATGGCGTGG
CGCCTTGGAACCCTGTGCTGACCATTCCCTGACCGAGGTTCAAGTCGAAG
GCAAGCTTCCGCAAAGATTGGAAGGGACACTTTTCCGCAACGGT
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