mRNA_F-distichus_contig105115.449.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105115.449.1
Unique NamemRNA_F-distichus_contig105115.449.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105115.449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105115contigF-distichus_contig105115:1139..1468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928972.394164-CDS-F-distichus_contig105115:1138..14681622928972.394164-CDS-F-distichus_contig105115:1138..1468Fucus distichus monoicousCDSF-distichus_contig105115 1139..1468 +
1690885087.3661036-CDS-F-distichus_contig105115:1138..14681690885087.3661036-CDS-F-distichus_contig105115:1138..1468Fucus distichus monoicousCDSF-distichus_contig105115 1139..1468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105115.449.1prot_F-distichus_contig105115.449.1Fucus distichus monoicouspolypeptideF-distichus_contig105115 1139..1468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105115.449.1

>prot_F-distichus_contig105115.449.1 ID=prot_F-distichus_contig105115.449.1|Name=mRNA_F-distichus_contig105115.449.1|organism=Fucus distichus monoicous|type=polypeptide|length=110bp
AAAGSLWGLSGWFSSRRLSIPPQPAGTEALSLPPESGAVASQNKEAGVPQ
GGNDASADGHPLVRVQEMTAAAQQGTSLEAARGGDVPAPVPAPLSMDPAK
QGRYPDEGYA
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mRNA from alignment at F-distichus_contig105115:1139..1468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105115.449.1 ID=mRNA_F-distichus_contig105115.449.1|Name=mRNA_F-distichus_contig105115.449.1|organism=Fucus distichus monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at F-distichus_contig105115:1139..1468+ (Fucus distichus monoicous)
GCCGCTGCGGGGTCGCTGTGGGGATTGTCGGGATGGTTCTCTTCACGTCG
TTTGTCAATACCGCCGCAACCGGCGGGGACGGAGGCCTTGTCACTCCCGC
CTGAATCGGGGGCAGTCGCTAGCCAAAACAAAGAGGCGGGAGTCCCGCAG
GGAGGGAACGACGCTTCAGCCGATGGGCACCCGCTTGTTCGCGTTCAAGA
GATGACAGCAGCGGCGCAGCAGGGAACGTCGTTGGAGGCGGCACGGGGAG
GCGATGTTCCAGCTCCCGTCCCCGCACCTTTGTCGATGGATCCCGCGAAG
CAAGGGCGCTATCCTGATGAAGGTTACGCG
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Coding sequence (CDS) from alignment at F-distichus_contig105115:1139..1468+

>mRNA_F-distichus_contig105115.449.1 ID=mRNA_F-distichus_contig105115.449.1|Name=mRNA_F-distichus_contig105115.449.1|organism=Fucus distichus monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at F-distichus_contig105115:1139..1468+ (Fucus distichus monoicous)
GCCGCTGCGGGGTCGCTGTGGGGATTGTCGGGATGGTTCTCTTCACGTCG
TTTGTCAATACCGCCGCAACCGGCGGGGACGGAGGCCTTGTCACTCCCGC
CTGAATCGGGGGCAGTCGCTAGCCAAAACAAAGAGGCGGGAGTCCCGCAG
GGAGGGAACGACGCTTCAGCCGATGGGCACCCGCTTGTTCGCGTTCAAGA
GATGACAGCAGCGGCGCAGCAGGGAACGTCGTTGGAGGCGGCACGGGGAG
GCGATGTTCCAGCTCCCGTCCCCGCACCTTTGTCGATGGATCCCGCGAAG
CAAGGGCGCTATCCTGATGAAGGTTACGCGGCCGCTGCGGGGTCGCTGTG
GGGATTGTCGGGATGGTTCTCTTCACGTCGTTTGTCAATACCGCCGCAAC
CGGCGGGGACGGAGGCCTTGTCACTCCCGCCTGAATCGGGGGCAGTCGCT
AGCCAAAACAAAGAGGCGGGAGTCCCGCAGGGAGGGAACGACGCTTCAGC
CGATGGGCACCCGCTTGTTCGCGTTCAAGAGATGACAGCAGCGGCGCAGC
AGGGAACGTCGTTGGAGGCGGCACGGGGAGGCGATGTTCCAGCTCCCGTC
CCCGCACCTTTGTCGATGGATCCCGCGAAGCAAGGGCGCTATCCTGATGA
AGGTTACGCG
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