mRNA_F-distichus_contig1051.447.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1051.447.1
Unique NamemRNA_F-distichus_contig1051.447.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig1051.447.1 vs. uniprot
Match: A0A6H5LN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN38_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.720e-42
Identity = 85/142 (59.86%), Postives = 109/142 (76.76%), Query Frame = 1 
Query:    1 LTRFVRTSIRVPRPAEVEEKQVDLTVKELLAVRQFSTCSQLKMRVLCEDIVRGAKAPLKLTDEQITVQLPSLARVLVVGYRKQVAMAEQGLHLAAARLQALARGARARKLLASIWKQAKEYALNVVWVEREARMKMEADKRA 426
            LTRF+++S R+ RPAEVE+K+V+L V+ELL +R +ST SQLK+R L   IVR A+AP  LT+++I  QLP LARVL  GYR+Q AM EQGL  AAAR+Q LARG   R++++SIW+QA EYA N+V  EREARMK E  +RA
Sbjct:  311 LTRFIKSSTRLARPAEVEQKRVELMVRELLTIRPYSTASQLKLRALGVVIVRSAEAPRDLTNDEINAQLPLLARVLTAGYRRQAAMVEQGLEFAAARIQGLARGKHIRRVMSSIWQQANEYARNIVQGEREARMKREKAQRA 452
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BLAST of mRNA_F-distichus_contig1051.447.1 vs. uniprot
Match: D7FJE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE3_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 4.190e-41
Identity = 82/137 (59.85%), Postives = 107/137 (78.10%), Query Frame = 1 
Query:    1 LTRFVRTSIRVPRPAEVEEKQVDLTVKELLAVRQFSTCSQLKMRVLCEDIVRGAKAPLKLTDEQITVQLPSLARVLVVGYRKQVAMAEQGLHLAAARLQALARGARARKLLASIWKQAKEYALNVVWVEREARMKME 411
            LTRF+++S R+ RPAEVE+K+V+L V+ELL +R +ST SQLK+R L   IVR A+AP   T+++I  QLPSLARVL  GYR+Q AM EQGL  AAAR+Q LARG + R++++SIW+QA EYA ++V  EREARMK E
Sbjct:  300 LTRFIKSSTRLARPAEVEQKRVELMVRELLTIRPYSTASQLKLRALGVVIVRSAEAPRDPTNDEINAQLPSLARVLTAGYRRQAAMVEQGLEFAAARIQGLARGKKIRRVISSIWQQANEYARDIVQGEREARMKRE 436
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1051.447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LN38_9PHAE2.720e-4259.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJE3_ECTSI4.190e-4159.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1051contigF-distichus_contig1051:14894..16109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size427
Cds size426
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1051.447.1prot_F-distichus_contig1051.447.1Fucus distichus monoicouspolypeptideF-distichus_contig1051 14894..16109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928972.0601997-CDS-F-distichus_contig1051:14893..150701622928972.0601997-CDS-F-distichus_contig1051:14893..15070Fucus distichus monoicousCDSF-distichus_contig1051 14894..15070 -
1690885087.2914712-CDS-F-distichus_contig1051:14893..150701690885087.2914712-CDS-F-distichus_contig1051:14893..15070Fucus distichus monoicousCDSF-distichus_contig1051 14894..15070 -
1622928972.0776012-CDS-F-distichus_contig1051:15479..155971622928972.0776012-CDS-F-distichus_contig1051:15479..15597Fucus distichus monoicousCDSF-distichus_contig1051 15480..15597 -
1690885087.30248-CDS-F-distichus_contig1051:15479..155971690885087.30248-CDS-F-distichus_contig1051:15479..15597Fucus distichus monoicousCDSF-distichus_contig1051 15480..15597 -
1622928972.0879612-CDS-F-distichus_contig1051:15978..161091622928972.0879612-CDS-F-distichus_contig1051:15978..16109Fucus distichus monoicousCDSF-distichus_contig1051 15979..16109 -
1690885087.3128343-CDS-F-distichus_contig1051:15978..161091690885087.3128343-CDS-F-distichus_contig1051:15978..16109Fucus distichus monoicousCDSF-distichus_contig1051 15979..16109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1051.447.1

>prot_F-distichus_contig1051.447.1 ID=prot_F-distichus_contig1051.447.1|Name=mRNA_F-distichus_contig1051.447.1|organism=Fucus distichus monoicous|type=polypeptide|length=142bp
LTRFVRTSIRVPRPAEVEEKQVDLTVKELLAVRQFSTCSQLKMRVLCEDI
VRGAKAPLKLTDEQITVQLPSLARVLVVGYRKQVAMAEQGLHLAAARLQA
LARGARARKLLASIWKQAKEYALNVVWVEREARMKMEADKRA
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mRNA from alignment at F-distichus_contig1051:14894..16109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1051.447.1 ID=mRNA_F-distichus_contig1051.447.1|Name=mRNA_F-distichus_contig1051.447.1|organism=Fucus distichus monoicous|type=mRNA|length=1216bp|location=Sequence derived from alignment at F-distichus_contig1051:14894..16109- (Fucus distichus monoicous)
CTTACTCGGTTCGTAAGGACTTCCATTCGCGTACCGCGACCAGCTGAAGT
GGAGGAGAAGCAGGTGGACTTAACGGTGAAGGAGCTACTAGCAGTGCGAC
AGTTCTCTACGTGTAGCCAGCTCAAGATGAGGTGATATCCCGCTTGTTTT
GCTACCTGATATTTTGTTTATAGACGAAGTATATAAAGATATAATTGAGA
GAAAGAGACAACATCGGTGTAGGGTCTTAAGAGAGCGATGTAGTAAGGCA
CGTCATAACAATCGCTGCTTAAGTGAAAACGACGTGTAGAGCCCACGCGT
GCACTTGTCCGCGTCGAGATGACCATTTCGAGTCAATCACTTTGGCATTG
CTCCTGGCAGTGCTTACGCCTCCCAACCTCACCCCCTATCTTCCCCTCTT
TCTATAGCTGTTGATGATGTATGGAGTGGTTCCAGCAATTGCTGTCTCTG
GGACAAAACTTTTTAAAAAAGTGGTTTATAGTGCTCAGATGTTATTTGCC
ATTATTCTTCAGGGTACTTTGTGAGGACATTGTACGGGGCGCGAAGGCTC
CTCTCAAACTGACGGACGAACAGATAACCGTGCAGCTACCCTCCCTGGCA
AGGGTTCTAGTAGTGGGGTACCGAAAGCAGGTCCGTCGTGGGCTTGAAGG
TCTGGGTTGGAGGGAAAGTAAGAAAGGTCTTTAAGCGTCCTGAATACTTA
CCCTCCGTAAATATACACCACATGCTTATGTCTTTTTCATCATCTTCAAG
TACTCGTCTGGTCAACCCCAGGTTTTGTAATAAAACTACTTCAAGAAAAA
CTATTTTTCGGTCGAGGTACATATATGTTCCTTGAAAGACAAGAACTCTT
GAAGACGCTTAGATCTTAAGTCCAGAGGACGCACAGCTATGGTGCAGTAC
ACTAAGGTCGCTTTCAAATGAACGCCGTAGATTGACTCTAGATCCCTGTA
CCCTCTCAAGGAAATAGAGCTACGCTGACGGCCCCGAATATCATGCGGTT
TTGAGCTCATCGAACATATCTCATGGCGTGATTCCCAAGGTAGCTATGGC
CGAACAAGGATTGCACTTGGCCGCCGCAAGGCTACAGGCCTTAGCTAGAG
GTGCGCGCGCGCGCAAGCTCTTGGCCTCCATATGGAAGCAAGCTAAGGAG
TATGCTTTGAACGTCGTGTGGGTGGAGAGGGAGGCTAGGATGAAAATGGA
GGCCGATAAAAGGGCC
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Coding sequence (CDS) from alignment at F-distichus_contig1051:14894..16109-

>mRNA_F-distichus_contig1051.447.1 ID=mRNA_F-distichus_contig1051.447.1|Name=mRNA_F-distichus_contig1051.447.1|organism=Fucus distichus monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at F-distichus_contig1051:14894..16109- (Fucus distichus monoicous)
CTTACTCGGTTCGTAAGGACTTCCATTCGCGTACCGCGACCAGCTGAAGT
GGAGGAGAAGCAGGTGGACTTAACGGTGAAGGAGCTACTAGCAGTGCGAC
AGTTCTCTACGTGTAGCCAGCTCAAGATGAGCTTACTCGGTTCGTAAGGA
CTTCCATTCGCGTACCGCGACCAGCTGAAGTGGAGGAGAAGCAGGTGGAC
TTAACGGTGAAGGAGCTACTAGCAGTGCGACAGTTCTCTACGTGTAGCCA
GCTCAAGATGAGGGTACTTTGTGAGGACATTGTACGGGGCGCGAAGGCTC
CTCTCAAACTGACGGACGAACAGATAACCGTGCAGCTACCCTCCCTGGCA
AGGGTTCTAGTAGTGGGGTACCGAAAGCAGGGTACTTTGTGAGGACATTG
TACGGGGCGCGAAGGCTCCTCTCAAACTGACGGACGAACAGATAACCGTG
CAGCTACCCTCCCTGGCAAGGGTTCTAGTAGTGGGGTACCGAAAGCAGGT
AGCTATGGCCGAACAAGGATTGCACTTGGCCGCCGCAAGGCTACAGGCCT
TAGCTAGAGGTGCGCGCGCGCGCAAGCTCTTGGCCTCCATATGGAAGCAA
GCTAAGGAGTATGCTTTGAACGTCGTGTGGGTGGAGAGGGAGGCTAGGAT
GAAAATGGAGGCCGATAAAAGGGCCGTAGCTATGGCCGAACAAGGATTGC
ACTTGGCCGCCGCAAGGCTACAGGCCTTAGCTAGAGGTGCGCGCGCGCGC
AAGCTCTTGGCCTCCATATGGAAGCAAGCTAAGGAGTATGCTTTGAACGT
CGTGTGGGTGGAGAGGGAGGCTAGGATGAAAATGGAGGCCGATAAAAGGG
CC
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