mRNA_F-distichus_contig105063.445.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105063.445.1
Unique NamemRNA_F-distichus_contig105063.445.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105063.445.1 vs. uniprot
Match: D7FT96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT96_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 5.180e-15
Identity = 42/60 (70.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    4 LNAFSATKSPGADFPWVSRRNLYASETNQTYVSLLLEMFSNIIQYQYAGNAHLMYAIVRR 183
            L+ F    SPG         NLYASE NQTYVSLLLEMFSNIIQYQY GNAHL+YAIVRR
Sbjct:  550 LSLFELFTSPG---------NLYASEANQTYVSLLLEMFSNIIQYQYVGNAHLVYAIVRR 600
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BLAST of mRNA_F-distichus_contig105063.445.1 vs. uniprot
Match: F0Y4A0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4A0_AURAN)

HSP 1 Score: 67.0 bits (162), Expect = 1.750e-11
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   49 WVSRRNLYASETNQTYVSLLLEMFSNIIQYQYAGNAHLMYAIVRR 183
            + S + LYA+E N  YVSLLLE+F+N+IQYQY GNAHL+YAIVRR
Sbjct: 1220 FTSPKFLYAAEANHVYVSLLLELFNNVIQYQYGGNAHLVYAIVRR 1264
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BLAST of mRNA_F-distichus_contig105063.445.1 vs. uniprot
Match: A0A7S2DH80_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH80_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.420e-11
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   49 WVSRRNLYASETNQTYVSLLLEMFSNIIQYQYAGNAHLMYAIVRR 183
            + S R LYA+E N  YV+LLLE+F+N++QYQYAGN HL+YAIVRR
Sbjct:  528 FTSHRFLYAAEGNHVYVALLLEVFNNVVQYQYAGNPHLVYAIVRR 572
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BLAST of mRNA_F-distichus_contig105063.445.1 vs. uniprot
Match: A0A835YUE5_9STRA (High-temperature-induced dauer-formation protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.540e-10
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   49 WVSRRNLYASETNQTYVSLLLEMFSNIIQYQYAGNAHLMYAIVRR 183
            + S + LYA+E N TYV LLLE F+NIIQYQYAGNA L+YAIVRR
Sbjct:  470 FTSPKFLYAAEGNHTYVGLLLECFNNIIQYQYAGNAQLIYAIVRR 514
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BLAST of mRNA_F-distichus_contig105063.445.1 vs. uniprot
Match: A0A8J2SMX9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMX9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.100e-10
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 SLNAFSATKSPGADFPWVSRRNLYASETNQTYVSLLLEMFSNIIQYQYAGNAHLMYAIVRR 183
            SL+  +A K       + S R LYA+E NQ +V+LLLE+F+N+IQYQY GN+HL+YAIVRR
Sbjct:  468 SLSLVAAVKLVSLFELFTSPRILYAAEGNQGHVALLLEIFNNLIQYQYGGNSHLIYAIVRR 528
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BLAST of mRNA_F-distichus_contig105063.445.1 vs. uniprot
Match: A0A7S2SIN5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIN5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.500e-10
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   49 WVSRRNLYASETNQTYVSLLLEMFSNIIQYQYAGNAHLMYAIVRR 183
            + S R LYA+E N  YV+LLLE+F+NI+QYQY GN HL+YAIVRR
Sbjct:   68 FTSPRFLYAAEGNHLYVALLLEIFNNIVQYQYTGNPHLIYAIVRR 112
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BLAST of mRNA_F-distichus_contig105063.445.1 vs. uniprot
Match: A0A7S2SIR3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIR3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.890e-10
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   49 WVSRRNLYASETNQTYVSLLLEMFSNIIQYQYAGNAHLMYAIVRR 183
            + S R LYA+E N  YV+LLLE+F+NI+QYQY GN HL+YAIVRR
Sbjct:  561 FTSPRFLYAAEGNHLYVALLLEIFNNIVQYQYTGNPHLIYAIVRR 605
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BLAST of mRNA_F-distichus_contig105063.445.1 vs. uniprot
Match: A0A7S3YDM8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YDM8_HETAK)

HSP 1 Score: 63.2 bits (152), Expect = 3.720e-10
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   55 SRRNLYASETNQTYVSLLLEMFSNIIQYQYAGNAHLMYAIVRR 183
            S R  ++SETN  +V+LLLE+F+NIIQYQYAGN HL+YAIVRR
Sbjct:  288 SPRFFFSSETNHLFVALLLEIFNNIIQYQYAGNPHLVYAIVRR 330
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BLAST of mRNA_F-distichus_contig105063.445.1 vs. uniprot
Match: A0A6A5C170_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C170_NAEFO)

HSP 1 Score: 61.6 bits (148), Expect = 1.380e-9
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    4 LNAFSATKSPGADFPWVSRRNLYASETNQTYVSLLLEMFSNIIQYQYAGNAHLMYAIVRR 183
            LN F A  SP         R LY+SE N  +VSLLLE+F+NIIQYQY GN H++Y+I+RR
Sbjct:  705 LNLFEAFASP---------RFLYSSEKNHQFVSLLLEVFNNIIQYQYEGNVHVIYSILRR 755
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BLAST of mRNA_F-distichus_contig105063.445.1 vs. uniprot
Match: UPI001CFE8D57 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFE8D57)

HSP 1 Score: 60.5 bits (145), Expect = 3.520e-9
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    4 LNAFSATKSPGADFPWVSRRNLYASETNQTYVSLLLEMFSNIIQYQYAGNAHLMYAIVRR 183
            LN F A  SP         R LY+SE N  +V+LLLE+F+NIIQYQY GN H++Y+I+RR
Sbjct:  719 LNLFEAFASP---------RFLYSSEKNHQFVALLLEVFNNIIQYQYEGNVHVIYSILRR 769
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105063.445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT96_ECTSI5.180e-1570.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0Y4A0_AURAN1.750e-1168.89Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2DH80_9STRA4.420e-1166.67Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A835YUE5_9STRA1.540e-1071.11High-temperature-induced dauer-formation protein-d... [more]
A0A8J2SMX9_9STRA2.100e-1055.74Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2SIN5_9STRA2.500e-1066.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SIR3_9STRA2.890e-1066.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3YDM8_HETAK3.720e-1069.77Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6A5C170_NAEFO1.380e-955.00Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
UPI001CFE8D573.520e-953.33uncharacterized protein n=1 Tax=Naegleria lovanien... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105063contigF-distichus_contig105063:892..1074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue3.3e-12
Seed eggNOG ortholog2880.D7FT96
Preferred nameHID1
Hectar predicted targeting categoryother localisation
GOsGO:0000138,GO:0000139,GO:0002119,GO:0002164,GO:0002791,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005829,GO:0005856,GO:0005874,GO:0005881,GO:0006810,GO:0006886,GO:0006950,GO:0007275,GO:0007588,GO:0008104,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009791,GO:0009987,GO:0010033,GO:0010035,GO:0010037,GO:0012505,GO:0014070,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0019898,GO:0030421,GO:0031001,GO:0031090,GO:0031312,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0032879,GO:0033036,GO:0034613,GO:0035690,GO:0040011,GO:0040024,GO:0042221,GO:0042493,GO:0042886,GO:0042995,GO:0043005,GO:0043051,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046677,GO:0046907,GO:0048519,GO:0048521,GO:0048856,GO:0050789,GO:0050795,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060259,GO:0065007,GO:0070727,GO:0070887,GO:0071241,GO:0071244,GO:0071702,GO:0071705,GO:0072347,GO:0090087,GO:0090498,GO:0097458,GO:0098588,GO:0098791,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:1901700,GO:1901701,GO:1903745,GO:1903998,GO:1903999,GO:2000252
EggNOG free text desc.response to brefeldin A
EggNOG OGsKOG2226@1,KOG2226@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.9415083-CDS-F-distichus_contig105063:891..10741622928971.9415083-CDS-F-distichus_contig105063:891..1074Fucus distichus monoicousCDSF-distichus_contig105063 892..1074 -
1690885087.2299962-CDS-F-distichus_contig105063:891..10741690885087.2299962-CDS-F-distichus_contig105063:891..1074Fucus distichus monoicousCDSF-distichus_contig105063 892..1074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105063.445.1prot_F-distichus_contig105063.445.1Fucus distichus monoicouspolypeptideF-distichus_contig105063 892..1074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105063.445.1

>prot_F-distichus_contig105063.445.1 ID=prot_F-distichus_contig105063.445.1|Name=mRNA_F-distichus_contig105063.445.1|organism=Fucus distichus monoicous|type=polypeptide|length=61bp
SLNAFSATKSPGADFPWVSRRNLYASETNQTYVSLLLEMFSNIIQYQYAG
NAHLMYAIVRR
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mRNA from alignment at F-distichus_contig105063:892..1074-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105063.445.1 ID=mRNA_F-distichus_contig105063.445.1|Name=mRNA_F-distichus_contig105063.445.1|organism=Fucus distichus monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at F-distichus_contig105063:892..1074- (Fucus distichus monoicous)
TCGCTTAACGCCTTTTCTGCGACGAAATCCCCCGGCGCTGATTTCCCGTG
GGTATCTCGCAGGAACCTGTACGCCTCCGAGACGAATCAGACGTACGTGT
CCCTTCTGCTCGAGATGTTTTCGAACATAATACAGTACCAGTACGCCGGA
AACGCGCACCTGATGTACGCTATCGTGCGACGG
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Coding sequence (CDS) from alignment at F-distichus_contig105063:892..1074-

>mRNA_F-distichus_contig105063.445.1 ID=mRNA_F-distichus_contig105063.445.1|Name=mRNA_F-distichus_contig105063.445.1|organism=Fucus distichus monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at F-distichus_contig105063:892..1074- (Fucus distichus monoicous)
TCGCTTAACGCCTTTTCTGCGACGAAATCCCCCGGCGCTGATTTCCCGTG
GGTATCTCGCAGGAACCTGTACGCCTCCGAGACGAATCAGACGTACGTGT
CCCTTCTGCTCGAGATGTTTTCGAACATAATACAGTACCAGTACGCCGGA
AACGCGCACCTGATGTACGCTATCGTGCGACGGTCGCTTAACGCCTTTTC
TGCGACGAAATCCCCCGGCGCTGATTTCCCGTGGGTATCTCGCAGGAACC
TGTACGCCTCCGAGACGAATCAGACGTACGTGTCCCTTCTGCTCGAGATG
TTTTCGAACATAATACAGTACCAGTACGCCGGAAACGCGCACCTGATGTA
CGCTATCGTGCGACGG
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